BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16447.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493235 jgi|Araly1|493235|fgenesh2_kg.7__2668__AT4G16447.1         745    0.0  


> Ahg493235 jgi|Araly1|493235|fgenesh2_kg.7__2668__AT4G16447.1
Length=461

 Score =  745 bits (403),  Expect = 0.0
 Identities = 443/462 (96%), Gaps = 4/462 (1%)
 Strand=Plus/Plus

Query  1    AAACCCTAGCAAGACTCTCTCTAAGAC---TCATATCATTACGTCATGAGTTCAATAGCA  57
            ||||||||||||||||||||| | |||   ||||||||||||||||||||||||||||||
Sbjct  1    AAACCCTAGCAAGACTCTCTCCACGACTGATCATATCATTACGTCATGAGTTCAATAGCA  60

Query  58   AGAGACCGAAAGGAACAAATGGTGATCCATTCTTCAATCGTCTTGCTTCAAGAAAGATTC  117
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  61   AGAGACCGAAAGGAACAAATGGTGATCCAGTCTTCGATCGTCTTGCTTCAAGAAAGATTC  120

Query  118  AGACAACTTCAGAGAGCAAGAGAGTTAAGAGCTGAACGAGAGCTCCTAAACCCTAAACCT  177
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  AGACAACTTCAGAGAGCAAGAGAGTTAAGAGCTGAGCGAGAGCTCCTAAACCCTAAACCT  180

Query  178  AACCACCAAGACAACATCTTGCAATATTACAGCGAACCCACTAGTTTCGGTTTCTTTCAG  237
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  181  AACCACCAAGACAACATCTTGCAATATTACAGCGAACCCACAAGTTTCGGCTTCTTTCAG  240

Query  238  TTTCTACCTATAAACTCTCAAACATCTTCGTCACAGCAGCTCCTATCCCTCTCCTTATGC  297
            |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  TTTCTACCTACAAACTCTCAAACATCTTCGTCACAGCAGCTCCTCTCCCTCTCCTTATGC  300

Query  298  TCACACTCCACCTCTGAATCCATTGAAAAGCCAAGCTTTTGTCATCAGTGGCCAAATAAA  357
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCACACCCCACCTCTGAATCCATTGAAAAGCCAAGCTTTTGTCATCAGTGGCCAAATAAA  360

Query  358  GATGACAAGAAGATGGGTGGGATTGATCGATACGACGATGTTGACACGTCTCTGCATCTC  417
            || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  361  GACGACAAGAAGATGGGTGGGATTGATCGATACGACGACGTTGATACGTCTCTGCATCTC  420

Query  418  TAAAACTAAAATAATTGTTCCTCCATCTTTTTGAAGTTCTAA  459
            |||| |||||||||| ||||||||||||||||||||||||||
Sbjct  421  TAAA-CTAAAATAATGGTTCCTCCATCTTTTTGAAGTTCTAA  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5