BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16450.1

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946617 jgi|Araly1|946617|scaffold_702846.1                        584    2e-166


> Ahg946617 jgi|Araly1|946617|scaffold_702846.1
Length=363

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 345/358 (96%), Gaps = 6/358 (2%)
 Strand=Plus/Plus

Query  49   TCGATCGAAGATGAATACTGACATCACTGCCTTGGAGAAGGCACAATACCCAGTGGTTGA  108
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  12   TCGATCGAAGATGAATACTGACATCACTGCCTTGGAGAAGCCACAATACCCAGTCGTTGA  71

Query  109  TCGGAATCCTGCTTTTACTAAAGTCGTCGGCAATTTCAGCACTCTCGATTACCTCCGTTT  168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  72   TCGGAATCCTGCTTTTACTAAAGTCGTCGGCAATTTCAGCACTCTCGATTACCTCCGATT  131

Query  169  CTCTACTATCACCGGCATCTCCGTCACCGTCGGCTATCTCTCTGGGATTAAGCCTGGGAT  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  CTCTACTATCACCGGCATCTCCGTCACCGTCGGCTATCTCTCTGGGATTAAGCCTGGGAT  191

Query  229  TAAGGGACCGTCGATGGTTACTGGAGGATTGATCGGGCTCATGGGAGGTTTCATGTATGC  288
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  192  TAAGGGACCGTCAATGGTTACTGGAGGATTGATCGGACTCATGGGAGGTTTCATGTATGC  251

Query  289  GTACCAGAACTCTGCCGGTAGACTCATGGGGTTTTTCCCTAATGATGGTGAAGTTGCTAG  348
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  252  GTACCAGAACTCTGCGGGTAGACTCATGGGGTTTTTCCCTAATGATGGTGAGGTTGCTAG  311

Query  349  TTACCAGAAGCGTGGTGGTTTCTCCAAATGAATGACTTTAGTGTTTTATTTTCTGGAT  406
            |||||||||||||||||||||||||||||||    |||||| |||| |||||||||||
Sbjct  312  TTACCAGAAGCGTGGTGGTTTCTCCAAATGA----CTTTAG-GTTT-ATTTTCTGGAT  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20298773348


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5