BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16460.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493233 jgi|Araly1|493233|fgenesh2_kg.7__2666__AT4G16460.1 1279 0.0
> Ahg493233 jgi|Araly1|493233|fgenesh2_kg.7__2666__AT4G16460.1
Length=877
Score = 1279 bits (692), Expect = 0.0
Identities = 826/888 (93%), Gaps = 20/888 (2%)
Strand=Plus/Plus
Query 256 AGAAAACGTTCGTCGAATCCTCTGACCCCTTTATCGCCGACGCTTCAAACTCGGTGACGT 315
|||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 1 AGAAAACGTTCGTCGAATCCTC--ATCCCTTAATCGCCGACGCTTC-AACTCGGTGACGT 57
Query 316 ATGTTCAGAGTCATATGCGAGCCATAGAATGGAGGGAGAGGCAGTTGAATCTA-G-G-AG 372
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| | | ||
Sbjct 58 ATGTTCAGAGTCATATGCGAGCAATAGAATGGAGGGAGAGGCAGTGGAATCTAGGAGTAG 117
Query 373 TAGTAGGAAGGAGCAGGAAAGGGAAAGAAGGCGTCTACGAGACAGAGAAAGAAGACAATC 432
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 TAGTAGGAAGGAGCAGGAAAGGGAAAGACGGCGTCTACGAGACAGAGAAAGAAGACAATC 177
Query 433 AATGAGCCAGGATGAGAGGGAAAGGCATTTGGCTCGGCGCCGCAAGAACTACCAGCTGAG 492
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 178 TATGAGCCAAGATGAGAGGGAAAGGCATTTGGCACGGCGCCGCAAGAACTATCAGCTGAG 237
Query 493 AAGGCAGAGAGCTGAGGTAAACCGCCTTGACTCTCCGATCCAAGCAATCACTGGAGGCAA 552
|||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 238 AAGGCAGAAAGCTGAGATAAACCGCCTCGACTCTCAGATCCAAGCAATCAGTGGAGGCAG 297
Query 553 CCAAGCAGCACTGAAT-TCACCGCCTGATTCTGGAGCCAGCTTTGTTGAGTCTGATCAGA 611
|||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 298 CCAAGCAGCAGTG-ATCTCACCGCCTGATTCTGGAGCCAGCTTGGTTGAGTCTGATCAGA 356
Query 612 GTGTGGTAATACCAGTGGAAGAGCTGGCTAAGA-TGATGGGGACTATACGGCTGACACGT 670
|||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 357 GTGTGGCAATACCAGTGGAAGAGCTGGCTAA-ACTGATGGGGACTATACGGCTGACTCGT 415
Query 671 CTGAAACATCTGGCGAGGACACTGAACAAGTCCAGCACTAGTACTGGTGCAGAGTCAAGC 730
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 CTGAAACATCTGGCGAGGACACTGAACAAGTCCAGCTCTAGTACTGGTGCAGAGTCAAGC 475
Query 731 AACACAGGAGCAACAGACGCAAAGACAAGATGTGCAATGTCAAATGGGCTACGTCTGAGT 790
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 476 AACACAGGAGCAACAGACGCAAAGACAAGATGTGCCATGTCAAATGGGCTACGTCTGAGT 535
Query 791 CG-GATAAAACGACTGGTGAGATTTAAGGGCCAGCAACTGAGGATCTTGTCACATTCCCA 849
|| | ||||||||||||||||| |||||||||||| |||| |||| |||||||||||
Sbjct 536 CGAG-TAAAACGACTGGTGAGAGCAAAGGGCCAGCAAGAGAGGTTCTTTTCACATTCCCA 594
Query 850 AACACCAGAACCTCAGCTTCACTAGAGTTGACAACTTGAACGAGAACCTCATCAATATTA 909
||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |
Sbjct 595 AACACAAGAACCTCAGCTTCACTAGAGTTCACAACTTGAAAGAGAACCTCATGAAT-T-A 652
Query 910 TTGTTTGTAAAAGTGAAAGTATTATTCTTTTGGAGATCCACAGCTAGGAAAACTGACCAT 969
|||||||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||||
Sbjct 653 TTGTTTGTAAAAGTGAAAGTATTATTGTTTTGGAGA-C-ACATCTAAGAAA-CTGACCAT 709
Query 970 ATTTGTTTTGAAATACAAGTGGGATTACATTACATTCTTCA-tttt-tttt-ttGTCACA 1026
||||||||| |||||||||||||||||||| | |||||||| |||| |||| ||||||||
Sbjct 710 ATTTGTTTTCAAATACAAGTGGGATTACATGATATTCTTCACTTTTCTTTTCTTGTCACA 769
Query 1027 GCCATCTCCTATACGGCTTTTATCATTTGTAGTTCGGAAGAAGAAACGAGAATGAGATAT 1086
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 770 GCCATCTCCTATCCGGCTTTTATCATTTGTAGTTCGGAAGAAGAAACGAGAGTGAGATAT 829
Query 1087 CATAGTTGAGTAATCTGTTTTGCTGAACAAGATAATAAGTTTGACAAT 1134
||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 830 CATAGCTGAGTAATCTCTTTTGCTGAACAAGATAATAAGTTTGACAAT 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5