BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16470.1 Length=1547 Score E Sequences producing significant alignments: (Bits) Value Ahg890597 jgi|Araly1|890597|Al_scaffold_0007_2583 1548 0.0 > Ahg890597 jgi|Araly1|890597|Al_scaffold_0007_2583 Length=1455 Score = 1548 bits (838), Expect = 0.0 Identities = 943/994 (95%), Gaps = 6/994 (1%) Strand=Plus/Plus Query 557 AGATTTGATACCGTGGAATGCAATGATATCTGGGTATGTGCAAAAAGGT-TTAGAGCAAG 615 ||||||||| ||||||||||| ||||||||||||||||||||||| ||| || || |||| Sbjct 465 AGATTTGATCCCGTGGAATGCGATGATATCTGGGTATGTGCAAAAGGGTCTT-GAACAAG 523 Query 616 AAGGGCTTTTTATTTATTATGATATGAGACAGAACAGAATAGTTCCTGATCAGTATACAT 675 | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 524 ATGGGCTTTATATTTATTATGATATGAGACAGAACGGAATAGTTCCTGATCAGTATACTT 583 Query 676 TTGCTTCAGTGTTTAGAGCTTGTTCTGCGTTAG-ATCGGTTGGAACATGGAAAGAGAGCT 734 |||||||||||||||||| |||||||||||||| ||| ||||||||| || ||||||||| Sbjct 584 TTGCTTCAGTGTTTAGAGTTTGTTCTGCGTTAGCATC-GTTGGAACACGGTAAGAGAGCT 642 Query 735 CACGCTGTGATGATAAAGCGGTGTATTAAGTCGAACATTATAGTTGATAGTGCTCTTGTT 794 |||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| Sbjct 643 CACGCTGTGATGATAAAGAGACATATTAAGTCGAACATTATAGTTGATAGTGCCCTTGTT 702 Query 795 GATATGTACTTTAAATGCAGTAGCTTCTCTGATGGCCACAGAGTATTTGATCAATTGTCC 854 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 703 GATATGTACTTTAAATGCAGCAGCTTCTCTGATGGCCACAAAGTATTTGATCAATTGTCC 762 Query 855 ACTAGAAATG-TGATTACGTGGACCTCATTGATATCTGGCTATGGATATCATGGAAAAGT 913 |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 763 ACTAGAAACGTTG-TTACGTGGACCTCATTGATGTCTGGCTATGGATATCATGGAAAAGT 821 Query 914 TTCAGAGGTGTTAAAATGCTTTGAAAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 973 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 822 TTCAGAGGTGTTAAAATGCTTTGAGAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 881 Query 974 TACTTTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 1033 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TACATTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 941 Query 1034 GCATTTCTATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCTGC 1093 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 942 GCATTTCAATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCAGC 1001 Query 1094 TATGGTTGATACGTTAGGGCGTGCTGGTAGGTTACAAGAAGCGTATGAATTTGTAATGAA 1153 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1002 TATGGTTGATACGTTAGGGCGTGCTGGTAGGCTACAAGAAGCGTACGAATTTGTAATGAA 1061 Query 1154 GTCACCATGCAAGGAGCATCCCCCAGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1213 ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 1062 GTCACCATGCAAGGAGCATGCTCCGGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1121 Query 1214 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTAGAGTTGGATCCAACAAA 1273 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1122 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTGGAGTTGGATCCAACGAA 1181 Query 1274 TGGAGGGAATTACGTTGTGTTTGCCAATGGATACGCGAGTTGTGGATTACGTGAAGCTGC 1333 ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1182 TGGGGGGAATTACGTGGTGTTTGCCAATGGATACGCGAGTTGTGGATTCCGTGATGCTGC 1241 Query 1334 CTCAAAGGTTAGGAGGAAGATGGAGAATGCAGGAGTGAAAAAAGATCCCGGGTATAGCCA 1393 |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1242 TTCAAAGGTTAGGAGGAGGATGGAGAACGCAGGAGTTAAAAAAGATCCCGGGTATAGCCA 1301 Query 1394 GATAGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1453 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 GATCGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1361 Query 1454 TGAAAAGATATACAAGAAGGTCCATGAGATGACTTCATTCTTTATGGATATTGACTACTA 1513 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1362 AGTAAAGATATACAAGAAGGTCCACGAGATGACTTCATTCTTTATGGATATTGACTACTA 1421 Query 1514 TCCAGATGGCTTAGACTCTAGCTGTCCTGTTTGA 1547 |||||||| |||||||||| |||||||||||||| Sbjct 1422 TCCAGATGACTTAGACTCTTGCTGTCCTGTTTGA 1455 Score = 560 bits (303), Expect = 1e-158 Identities = 416/470 (89%), Gaps = 10/470 (2%) Strand=Plus/Plus Query 42 ATGAAAACGTTAATCTCTTCTTCTCTTTCTCACAAATCCCAATGTTTGACT-ATTTGCTT 100 |||||||||||||| ||||||||||| |||||||||||||| | | || | | ||||| Sbjct 1 ATGAAAACGTTAATATCTTCTTCTCTGTCTCACAAATCCCACTCTCAGA-TCCTCTGCTT 59 Query 101 CAAGCTGAATAAGCTTGCAATGGTTTACTACACTC-G--GGAGTTCCAAACAGAGGCGTC 157 | |||||||| ||||| ||| |||||| ||| | | ||| ||||||||||| || Sbjct 60 CTCTCTGAATAAACTTGCCATGATTTACT---CTCAGAAGTTGTTACAAACAGAGGCCTC 116 Query 158 TCAGACGTCGGCTTCCGGTTCTATGTTCTCCGGAAATGCGACGACGATCCTACGCCGGAT 217 |||| |||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||| Sbjct 117 TCAGTCGTCGGCTTCCGGTCCTATGTTTTCCGGCAATGCGACGGCGATCCTACGCCGGAT 176 Query 218 GCTTGCAGAGAAGAGAATTGGAAGGTTTCAGGTGGAGAATCAGAGGAAA-ACAGAGAAGC 276 ||| || |||| ||||||||| || ||||||||||||||||||| |||| | ||||||| Sbjct 177 GCTAGCGGAGAGGAGAATTGGCAGCTTTCAGGTGGAGAATCAGA-GAAAGAAAGAGAAGT 235 Query 277 TAGATAAGACATTAAAGGGTCTATGTGTTACAGGGAGATTGAAAGAAGCTGTTGGGTTGT 336 |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 236 TAGATAAGACATTAAAGGGTCTGTGTGTCACTGGGAGATTGAAAGAAGCTGTTGGGTTGT 295 Query 337 TATGGAGTAGCGGATTGCAAGTAGAGCCTGAGACTTATGCTGTACTGTTGCAGGAATGTA 396 ||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 296 TATGGCGTAGCGGGTTGCAAGTCGAGCCTGAGACTTATGCTGTGCTGTTGCAGGAATGTA 355 Query 397 AACAAAGGAAGGAGTATACAAAAGGGAAACGTATACATGCTCAGATGTTTGTTGTTGGAT 456 ||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| |||| Sbjct 356 AACAAAGGAAGGAATATACAAAAGGGAAACGGATTCATGCTCAGATGATTGTTGTAGGAT 415 Query 457 TTGCTCTCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 506 ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 ATGCTCCCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57935262645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5