BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16470.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890597 jgi|Araly1|890597|Al_scaffold_0007_2583 1548 0.0
> Ahg890597 jgi|Araly1|890597|Al_scaffold_0007_2583
Length=1455
Score = 1548 bits (838), Expect = 0.0
Identities = 943/994 (95%), Gaps = 6/994 (1%)
Strand=Plus/Plus
Query 557 AGATTTGATACCGTGGAATGCAATGATATCTGGGTATGTGCAAAAAGGT-TTAGAGCAAG 615
||||||||| ||||||||||| ||||||||||||||||||||||| ||| || || ||||
Sbjct 465 AGATTTGATCCCGTGGAATGCGATGATATCTGGGTATGTGCAAAAGGGTCTT-GAACAAG 523
Query 616 AAGGGCTTTTTATTTATTATGATATGAGACAGAACAGAATAGTTCCTGATCAGTATACAT 675
| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 524 ATGGGCTTTATATTTATTATGATATGAGACAGAACGGAATAGTTCCTGATCAGTATACTT 583
Query 676 TTGCTTCAGTGTTTAGAGCTTGTTCTGCGTTAG-ATCGGTTGGAACATGGAAAGAGAGCT 734
|||||||||||||||||| |||||||||||||| ||| ||||||||| || |||||||||
Sbjct 584 TTGCTTCAGTGTTTAGAGTTTGTTCTGCGTTAGCATC-GTTGGAACACGGTAAGAGAGCT 642
Query 735 CACGCTGTGATGATAAAGCGGTGTATTAAGTCGAACATTATAGTTGATAGTGCTCTTGTT 794
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 643 CACGCTGTGATGATAAAGAGACATATTAAGTCGAACATTATAGTTGATAGTGCCCTTGTT 702
Query 795 GATATGTACTTTAAATGCAGTAGCTTCTCTGATGGCCACAGAGTATTTGATCAATTGTCC 854
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 703 GATATGTACTTTAAATGCAGCAGCTTCTCTGATGGCCACAAAGTATTTGATCAATTGTCC 762
Query 855 ACTAGAAATG-TGATTACGTGGACCTCATTGATATCTGGCTATGGATATCATGGAAAAGT 913
|||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 763 ACTAGAAACGTTG-TTACGTGGACCTCATTGATGTCTGGCTATGGATATCATGGAAAAGT 821
Query 914 TTCAGAGGTGTTAAAATGCTTTGAAAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 973
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 TTCAGAGGTGTTAAAATGCTTTGAGAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 881
Query 974 TACTTTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 1033
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TACATTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 941
Query 1034 GCATTTCTATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCTGC 1093
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 942 GCATTTCAATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCAGC 1001
Query 1094 TATGGTTGATACGTTAGGGCGTGCTGGTAGGTTACAAGAAGCGTATGAATTTGTAATGAA 1153
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1002 TATGGTTGATACGTTAGGGCGTGCTGGTAGGCTACAAGAAGCGTACGAATTTGTAATGAA 1061
Query 1154 GTCACCATGCAAGGAGCATCCCCCAGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1213
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1062 GTCACCATGCAAGGAGCATGCTCCGGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1121
Query 1214 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTAGAGTTGGATCCAACAAA 1273
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1122 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTGGAGTTGGATCCAACGAA 1181
Query 1274 TGGAGGGAATTACGTTGTGTTTGCCAATGGATACGCGAGTTGTGGATTACGTGAAGCTGC 1333
||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1182 TGGGGGGAATTACGTGGTGTTTGCCAATGGATACGCGAGTTGTGGATTCCGTGATGCTGC 1241
Query 1334 CTCAAAGGTTAGGAGGAAGATGGAGAATGCAGGAGTGAAAAAAGATCCCGGGTATAGCCA 1393
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1242 TTCAAAGGTTAGGAGGAGGATGGAGAACGCAGGAGTTAAAAAAGATCCCGGGTATAGCCA 1301
Query 1394 GATAGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1453
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GATCGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1361
Query 1454 TGAAAAGATATACAAGAAGGTCCATGAGATGACTTCATTCTTTATGGATATTGACTACTA 1513
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1362 AGTAAAGATATACAAGAAGGTCCACGAGATGACTTCATTCTTTATGGATATTGACTACTA 1421
Query 1514 TCCAGATGGCTTAGACTCTAGCTGTCCTGTTTGA 1547
|||||||| |||||||||| ||||||||||||||
Sbjct 1422 TCCAGATGACTTAGACTCTTGCTGTCCTGTTTGA 1455
Score = 560 bits (303), Expect = 1e-158
Identities = 416/470 (89%), Gaps = 10/470 (2%)
Strand=Plus/Plus
Query 42 ATGAAAACGTTAATCTCTTCTTCTCTTTCTCACAAATCCCAATGTTTGACT-ATTTGCTT 100
|||||||||||||| ||||||||||| |||||||||||||| | | || | | |||||
Sbjct 1 ATGAAAACGTTAATATCTTCTTCTCTGTCTCACAAATCCCACTCTCAGA-TCCTCTGCTT 59
Query 101 CAAGCTGAATAAGCTTGCAATGGTTTACTACACTC-G--GGAGTTCCAAACAGAGGCGTC 157
| |||||||| ||||| ||| |||||| ||| | | ||| ||||||||||| ||
Sbjct 60 CTCTCTGAATAAACTTGCCATGATTTACT---CTCAGAAGTTGTTACAAACAGAGGCCTC 116
Query 158 TCAGACGTCGGCTTCCGGTTCTATGTTCTCCGGAAATGCGACGACGATCCTACGCCGGAT 217
|||| |||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 117 TCAGTCGTCGGCTTCCGGTCCTATGTTTTCCGGCAATGCGACGGCGATCCTACGCCGGAT 176
Query 218 GCTTGCAGAGAAGAGAATTGGAAGGTTTCAGGTGGAGAATCAGAGGAAA-ACAGAGAAGC 276
||| || |||| ||||||||| || ||||||||||||||||||| |||| | |||||||
Sbjct 177 GCTAGCGGAGAGGAGAATTGGCAGCTTTCAGGTGGAGAATCAGA-GAAAGAAAGAGAAGT 235
Query 277 TAGATAAGACATTAAAGGGTCTATGTGTTACAGGGAGATTGAAAGAAGCTGTTGGGTTGT 336
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 236 TAGATAAGACATTAAAGGGTCTGTGTGTCACTGGGAGATTGAAAGAAGCTGTTGGGTTGT 295
Query 337 TATGGAGTAGCGGATTGCAAGTAGAGCCTGAGACTTATGCTGTACTGTTGCAGGAATGTA 396
||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 296 TATGGCGTAGCGGGTTGCAAGTCGAGCCTGAGACTTATGCTGTGCTGTTGCAGGAATGTA 355
Query 397 AACAAAGGAAGGAGTATACAAAAGGGAAACGTATACATGCTCAGATGTTTGTTGTTGGAT 456
||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| ||||
Sbjct 356 AACAAAGGAAGGAATATACAAAAGGGAAACGGATTCATGCTCAGATGATTGTTGTAGGAT 415
Query 457 TTGCTCTCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 506
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATGCTCCCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5