BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16480.1
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946614 jgi|Araly1|946614|scaffold_702843.1 2828 0.0
Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1 872 0.0
> Ahg946614 jgi|Araly1|946614|scaffold_702843.1
Length=1789
Score = 2828 bits (1531), Expect = 0.0
Identities = 1695/1776 (95%), Gaps = 4/1776 (0%)
Strand=Plus/Plus
Query 120 AAGAAACAATGGTGGAAGGAGGAATTGCGAAAGCAGACAAAACAGAGTTCACAGAGTGTT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 13 AAGAAACAATGGTGGAAGGAGGAATTGCGAAAGCAGACAAAACAGAGTTCACTGAGTGTT 72
Query 180 GGAGAACAACATGGAAGACACCTTACATCATGCGACTTGCTCTCTCCGCCGGAATCGGAG 239
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 73 GGAGAACAACATGGAAGACACCTTACATCATGAGACTGGCTCTCTCCGCCGGAATCGGAG 132
Query 240 GTCTTCTCTTCGGTTACGATACCGGAGTCATTTCCGGAGCTCTTCTTTTCATCAAAGAAG 299
||||||||||||||||||| || |||||||||||||| |||||||| ||||| || || |
Sbjct 133 GTCTTCTCTTCGGTTACGACACTGGAGTCATTTCCGGGGCTCTTCTCTTCATTAAGGAGG 192
Query 300 ATTTTGATGAAGTTGATAAGAAAACATGGCTTCAGTCAACTATTGTTAGTATGGCAGTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATTTTGATGAAGTTGATAAGAAAACATGGCTTCAGTCAACTATTGTTAGTATGGCAGTGG 252
Query 360 CTGGAGCCATCGTCGGAGCAGCAGTCGGAGGTTGGATCAATGATAAGTTTGGTAGGAGGA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 253 CTGGAGCCATCGTCGGAGCAGCAGTCGGAGGTTGGATCAATGATAGGTTTGGTAGGAGGA 312
Query 420 TGTCGATTCTTATCGCCGATGTTCTTTTCTTGATCGGTGCGATTGTGATGGCATTTGCTC 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGTCGATTCTTATCGCTGATGTTCTTTTCTTGATCGGTGCGATTGTGATGGCATTTGCTC 372
Query 480 CGGCTCCTTGGGTTATCATCGTTGGAAGAATCTTTGTTGGGTTTGGTGTTGGTATGGCTT 539
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 373 CGGCTCCGTGGGTTATCATTGTTGGAAGAATCTTTGTTGGATTTGGTGTTGGTATGGCTT 432
Query 540 CGATGACGTCTCCGTTGTATATCTCTGAAGCTTCTCCGGCGAGGATTAGAGGTGCACTTG 599
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CGATGACGTCGCCGTTGTACATCTCTGAAGCTTCTCCGGCGAGGATTAGAGGTGCACTTG 492
Query 600 TTAGTACCAATGGTCTTCTCATCACTGGTGGACAATTCTTCTCGTACCTCATCAATCTTG 659
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 493 TTAGTACCAATGGTCTTCTCATCACTGGAGGACAATTCTTCTCTTACCTCATCAATCTTG 552
Query 660 CTTTTGTCCATACTCCGGGAACATGGAGATGGATGTTGGGTGTTGCGGGAGTTCCAGCTA 719
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 553 CTTTTGTCCATACTCCGGGAACATGGAGATGGATGTTGGGTGTTGCGGGAATTCCAGCGA 612
Query 720 TTGTTCAGTTTGTGCTTATGTTGTCGCTACCTGAGTCTCCAAGGTGGTTATATAGAAAGG 779
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TAGTTCAGTTTGTGCTCATGTTGTCGCTACCTGAGTCTCCAAGGTGGTTATATAGAAAGG 672
Query 780 ACAGGATTGCGGAATCCAGAGCGATTCTTGAGAGGATTTACCCGGCTGACGAAGTGGAGG 839
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 673 ACAGGGTTGCGGAATCCAGAGCGATCCTTGAGAGGATTTACCCGGCGGACGAAGTGGAGG 732
Query 840 CGGAGATGGAAGCTTTGAAACTGTCAGTGGAGGCAGAGAAAGCAGACGAGGCAATCATTG 899
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 733 CGGAGATGGAAGCTTTGAAACAGTCAGTGGAGGCAGAGAAAGCTGACGAGGCAATCATCG 792
Query 900 GAGATAGCTTCTCTGC-AAAGCTGAAAGGAGCTTTCGGGAATCCCGTTGTTCGACGTGGA 958
||||||||||| | || ||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 793 GAGATAGCTTCACCGCGAAAA-TGAAAGGAGCTTTCGGAAATCCCGTCGTTCGACGTGGA 851
Query 959 CTCGCTGCTGGTATCACGGTGCAAGTGGCTCAGCAGTTTGTGGGGATCAACACTGTCATG 1018
|| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 852 CTTGCTGCTGGTATCACAGTGCAGGTGGCACAGCAGTTTGTGGGGATCAACACTGTCATG 911
Query 1019 TACTACAGTCCTTCTATTGTGCAATTTGCTGGTTACGCCTCTAACAAGACAGCTATGGCC 1078
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 912 TACTACAGTCCTTCAATTGTGCAATTCGCTGGTTACGCCTCCAACAAGACAGCTATGGCC 971
Query 1079 TTGTCTCTTATTACTTCCGGTTTGAATGCTTTGGGTTCTATTGTGAGCATGATGTTTGTC 1138
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 972 TTGTCTCTCATTACTTCTGGTTTGAATGCCTTGGGTTCGATTGTGAGCATGATGTTTGTC 1031
Query 1139 GATCGGTACGGGAGAAGGAAGCTCATGATCATCTCTATGTTTGGGATCATAGCATGTCTT 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1032 GATCGGTACGGGAGAAGGAAGCTTATGATCATCTCTATGTTTGGGATCATAACATGTCTT 1091
Query 1199 ATCATCTTAGCCA-CGGTGTTCTCACAAGCGGCCATCCACGCCCCCAAGATCGATGCGTT 1257
||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1092 ATCATCTTAGCCATCG-TGTTCTCACAAGCGGCCATTCACGCCCCCAAGATCGATGCGCT 1150
Query 1258 TGAGTCAAGGACGTTTGCACCAAATGCTACTTGTTCAGCATATGCCCCTCTCGCAGCCGA 1317
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GGAGTCAAGGATGTTTGCTCCAAATGCTACTTGTTCAGCATATGCCCCTCTCGCAGCCGA 1210
Query 1318 AAATGCTCCTCCCTCGAGGTGGAACTGCATGAAGTGTCTCAGGTCCGAATGTGGATTCTG 1377
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1211 AAACGCTCCTCCCTCGAGATGGAACTGCATGAAGTGTCTCAGGTCTGAATGTGGATTCTG 1270
Query 1378 CGCCAGCGGGGTACAGCCGTACGCACCAGGAGCATGTGTGGTGTTGTCAGATGACATGAA 1437
||||||||| ||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 1271 CGCCAGCGGAGTACAGCCGTATGCACCAGGAGCATGTGTGGTGTTGTCGGACGAGATGAA 1330
Query 1438 AGCAACTTGCAGCTCAAGAGGAAGAACATTCTTCAAAGATGGATGTCCAAGCAAGTTTGG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AGCAACTTGCAGCTCAAGAGGAAGAACATTCTTCAAAGATGGATGTCCAAGCAAGTTTGG 1390
Query 1498 GTTCTTAGCTATAGTGTTTTTGGGGCTTTACATCGTAGTCTACGCACCAGGTATGGGCAC 1557
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GTTCTTAGCAATAGTGTTTTTGGGGCTTTACATCGTAGTCTACGCACCAGGTATGGGCAC 1450
Query 1558 TGTCCCGTGGATCGTCAACTCTGAGATCTATCCGCTCAGATACAGAGGTCTTGGTGGAGG 1617
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1451 TGTCCCGTGGATCGTCAACTCTGAGATCTATCCGCTAAGATACAGAGGTCTTGGTGGAGG 1510
Query 1618 AATAGCCGCCGTCTCGAATTGGGTCTCCAACCTGATAGTGAGTGAGAGCTTCCTCTCACT 1677
||||||||||||||| |||||||| ||||| || || ||||||||||| |||||||||||
Sbjct 1511 AATAGCCGCCGTCTCAAATTGGGTGTCCAATCTCATTGTGAGTGAGAGTTTCCTCTCACT 1570
Query 1678 CACCCATGCTCTCGGCTCCTCTGGTACCTTCCTTCTCTTTGCTGGCTTCTCCACGATCGG 1737
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1571 CACCCATGCTCTTGGCTCCTCTGGGACCTTCCTTCTCTTTGCTGGCTTCTCCACGATCGG 1630
Query 1738 GCTCTTCTTCATTTGGTTGCTCGTTCCTGAGACCAAAGGGCTTCAGTTTGAGGAGGTCGA 1797
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1631 GCTCTTCTTCATTTGGCTGCTCGTTCCTGAGACCAAAGGGCTTCAGTTTGAGGAGGTAGA 1690
Query 1798 GAAGTTGCTCGAGGTCGGCTTCAAGCCCAGTCTCTTGCGGCGGAGGGAGAAGAAGGGCAA 1857
|||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||
Sbjct 1691 GAAGTTGCTCGAGGTCGGCTACAAACCCAGTCTCTTGCGGCGGAGGAACAAGAAGGGCAA 1750
Query 1858 AGAAGTCGATGCTGCTTAAGACGATGATGATCACTT 1893
|||||||||||| |||||||||||||||||||||||
Sbjct 1751 AGAAGTCGATGCCGCTTAAGACGATGATGATCACTT 1786
> Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1
Length=1743
Score = 872 bits (472), Expect = 0.0
Identities = 1303/1703 (77%), Gaps = 62/1703 (4%)
Strand=Plus/Plus
Query 167 TTCACAGA-GTGTTGGA-GAACAACATGGAAGACACCTTACATCATGCGACTTGCTCTCT 224
|||||||| ||| |||| | ||||||||| |||| |||||||| ||||| || |||||||
Sbjct 37 TTCACAGAGGTG-TGGACG-ACAACATGGGAGACCCCTTACATTATGCGGCTGGCTCTCT 94
Query 225 CCGCCGGAATCGGAGGTCTTCTCTTCGGTTACGATACCGGAGTCATTTCCGGAGCTCTTC 284
| || || || ||||| || |||||||| ||| | || |||||||| | || |||||||
Sbjct 95 CGGCTGGTATTGGAGGACTCCTCTTCGGGTACAACACGGGAGTCATCGCAGGGGCTCTTC 154
Query 285 TTTTCATCAAAGAAGATTTTGATGAAGTTGATAAGAAAACATGGCTTCA-GTCAACTATT 343
| | ||| ||||| || |||| ||| || || || || |||||||| || | | | |||
Sbjct 155 TCTACATAAAAGAGGAGTTTGGTGACGTAGACAACAAGACATGGCTCCAGGAGATC-ATT 213
Query 344 GTTAGTATGGCAGTGGCTGGAGCCATCGTCGGAGCAGC-AGTCGGAGGTTGGAT-CAATG 401
|| || ||| | |||||||||||||| || |||||||| | | ||||| ||| | ||| |
Sbjct 214 GTGAGCATGACCGTGGCTGGAGCCATTGTTGGAGCAGCTA-TAGGAGGATGG-TACAACG 271
Query 402 ATAAGTTTGGTAGGAGGATGT-CGATTCTTATCGCCGATGTTCTTTTCTTGATCGGTGCG 460
|||||||||||||||||| || || ||||||| |||||||| || ||| || | |||||
Sbjct 272 ATAAGTTTGGTAGGAGGACGTCCG-TTCTTATTGCCGATGTGCTCTTCCTGGTGGGTGCC 330
Query 461 ATTGTGATGGCATTTGCTCCGGCTCCTTGGGTTATCATCGTTGGAAGAATCTTTGTTGGG 520
| ||||||| | |||| || || ||||| |||||| | || ||| |||| | ||||
Sbjct 331 CTGGTGATGGTGGTCGCTCATGCGCCCTGGGTCATCATCCTCGGCAGACTCTTAG-TGGG 389
Query 521 -TTTGGTGTTGGTATGGCTTCGATGACGTCTCCG-TTGTATATCTCTGAAGCT-TCTCCG 577
||||| |||||||||||||| ||||| || ||| || || || |||| || | |||||
Sbjct 390 TTTTGGGGTTGGTATGGCTTCCATGACCTCACCGCTT-TACATATCTG-AGATGTCTCCT 447
Query 578 GCGAGGATTAGAGGTGCACTT-GTTAGTACCAATGGTCTTCTCATCACTGGTGGACA-AT 635
||||| || ||||| || ||| || || ||||| || ||||||||||| || ||||| |
Sbjct 448 GCGAGAATCAGAGGCGC-CTTGGTCAGCACCAACGGACTTCTCATCACCGGAGGACAGTT 506
Query 636 TCTTCTCGTACCTCATCAATCTTGCTTTTGTCCATACTCCGGGAACATGGAGATGGATGT 695
|| | || || |||||||| || || ||||||||||| ||||| |||||||| |||||||
Sbjct 507 TC-TGTCTTATCTCATCAACCTCGCCTTTGTCCATACACCGGGTACATGGAGGTGGATGT 565
Query 696 TGGGTGT-TGCGG-GAGTTCCAGCTATTGTTCAGTT-TGTGCTTATGTTGTCGCTACCTG 752
|||| || | ||| || |||| || || ||||||| ||| || ||| | ||||||| |
Sbjct 566 TGGGAGTCT-CGGCGA-TTCCGGCAATCATTCAGTTCTGT-CTCATGCTAACGCTACCAG 622
Query 753 AGTCTCCAAGGTGGTTATATAGAAAGGACAGGATTGCGGAATCCAGAG-CGATTCTTGAG 811
||||||| ||||| | || ||||| || |||| || || || |||| | || || |||
Sbjct 623 AGTCTCCGCGGTGGCTCTACAGAAATGATAGGAAAGCCGAGTCAAGAGAC-ATCCTCGAG 681
Query 812 AGGATTTACCCGGCTGACGA-AGTGGAGGCGGAGATGGAAGCTTTGAAACTGTCAGTGGA 870
|| || |||||||| || || || || |||||||| | || | || ||| ||
Sbjct 682 AGAATATACCCGGCAGA-GATGGTTGAAGCGGAGATAGCTGCACTCAAGGAGTCTGTCCT 740
Query 871 GGCAGAGAAAGCAGACGAGGCA-ATCATTGGAGATAGCTTCTCTGCA-AAGCTGAAAGGA 928
|||||||| || ||||||| | || || || ||| |||||| | | || || | |||
Sbjct 741 GGCAGAGACGGCCGACGAGG-ATATTATCGGCCATACCTTCTCCG-ATAAACTCAGAGGC 798
Query 929 GCTTTCGGGAATCCCGTTGTTCGACGTGGACTCGCTGCTGGTATCACGGTGCAAGTGGCT 988
||| || |||||| ||||| || | || || || || |||||||| || || || ||
Sbjct 799 GCTCTCTCGAATCCAGTTGTCCGCCACGGCCTGGCCGCAGGTATCACCGTCCAGGTCGCC 858
Query 989 CAGCAGTTTGTGGGGATCAACACTGTCATGTACTACAGTCCTTCTATTGTGCAATTTGCT 1048
|||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |||||
Sbjct 859 CAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCCACTATTCTGCAGTTTGCA 918
Query 1049 GGTTACGCCTCTAACAAGACAGCTATGGC-CTTGTCTCTTATTACTTCCGGTTTGAATGC 1107
||||| || || ||||||||||| ||||| |||| |||| || || |||||| | |||||
Sbjct 919 GGTTATGCATCCAACAAGACAGCCATGGCTCTTG-CTCTCATAACCTCCGGTCTCAATGC 977
Query 1108 TTTGGGTTCTATTGTGAGCATGATGTTTGTCGATCGGTACGGGAGAAGGAAGCTCATGAT 1167
|||| || | || |||||||||||||| ||||| || || | | ||||| |||||
Sbjct 978 AGTGGGGTCGGTAGTAAGCATGATGTTTGTAGATCGTTATGGTCGGCGCAAGCTTATGAT 1037
Query 1168 CATCTCTATGTTTGGGATCATAGCATGTCTTATCATCTTAGCCACGGTGTTCTCA-CAAG 1226
| | || ||||| ||||||||| | ||||||||||| || || | || ||| | |||
Sbjct 1038 CGTTTCCATGTTCGGGATCATATCTTGTCTTATCATATTGGCTGCCGTCTTC-AATGAAG 1096
Query 1227 CGGCCATCCACGCCCCCAAGATCGATGCGTTTGAGTCAAGGACGTTTGCACCAAATGCTA 1286
| | | |||||| |||||||||||| | || || || | ||||| | ||||||||
Sbjct 1097 CCTCAAACCACGCTCCCAAGATCGATAAGAGAGACTCCAGAAATTTTGCTCGAAATGCTA 1156
Query 1287 CTTGTTCAGCATATGCCCC-TCTCGCAGCCGAAAATGCTCCTCCCTCGAGGTGGAACTGC 1345
||||| | |||| |||||| | || ||||| |||||||||||| | ||||||||
Sbjct 1157 CTTGTCCCGCATTTGCCCCAT-TCACAGCCTCCCGTGCTCCTCCCTCCAACTGGAACTGT 1215
Query 1346 ATGAAGTGTCTCAGGTCCGAATGTGGATTCTGCGCCAGCGGGGTACAGCCGTACGCACCA 1405
||||||||||| || | ||| || ||||||||| ||| ||| | |||| |||||||||
Sbjct 1216 ATGAAGTGTCTTAGATACGATTGCGGATTCTGCTCCAACGGAGCACAGGAGTACGCACCT 1275
Query 1406 GGAGCATGTGTGGTGTT--GTCAGATGACATGAAAGCAACT-TG-CAGCTC-AAGAGGAA 1460
||||| || || |||| ||| | ||| ||||| || | | || || ||| || |||
Sbjct 1276 GGAGCCTGCGT--TGTTCAGTCTGCTGATATGAAGGC-ATTGTGCCA-CTCTAA-AGGCC 1330
Query 1461 GAACATTCTTCAAAGATGGATGTCCAAGCAAGTTTGGGTTCTTAGCTATAGTGTTTTTGG 1520
|||| ||||||||||| ||||| || |||||||| |||| | | || || || || | |
Sbjct 1331 GAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCATCGTCTTCCTCG 1390
Query 1521 GGCTTTACATCGTAGTCTACGCACCAGGTATGGGCACTGTCCCGTGGATCGTCAACTCTG 1580
|||| |||||| | || ||||| || ||||||||||| || || ||||| |||||||| |
Sbjct 1391 GGCTCTACATCATTGTGTACGCTCCCGGTATGGGCACAGTTCCATGGATTGTCAACTCAG 1450
Query 1581 AGATCTATCCGC-TCAGATACAGAGGTCTTG-GTGGAGGAATAGCCGCCGTCTCGAATTG 1638
|||||||||| | || | |||||||| |||| | |||||||| || || ||||| || ||
Sbjct 1451 AGATCTATCCTCTTC-GCTACAGAGGGCTTGCG-GGAGGAATCGCTGCAGTCTCAAACTG 1508
Query 1639 GGTCTCCAACCT-GATAGTGAGTGAGAGC-TTCCTCTCACTCACCCATGCTCTCGGCTCC 1696
| | || || || | | |||||||||| | ||||| |||| || | || |||| ||
Sbjct 1509 GATGTCGAATCTCG-TCGTGAGTGAGA-CGTTCCTGACACTTACAAACGCGGTCGGGTCA 1566
Query 1697 TCTGGTACCTTCCTTCTCTTTGCTGGCTTCTCCACGATCGGGCTCTTCTTCATTTGGTTG 1756
|| || || |||||||| ||||| || | ||| | |||||||| |||||||| ||| ||
Sbjct 1567 TCAGGAACATTCCTTCTATTTGCAGGGTCCTCGGCAATCGGGCTGTTCTTCATCTGGCTG 1626
Query 1757 CTCGTTCCTGAGACCAAAGGGCTTCAGTTTGAGGAGGTCGAGAAGTTGCTCGA-GGTCGG 1815
|| || ||||||||||||||||||||||||||||| || ||||||||| | || || ||
Sbjct 1627 CTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAGAAGTTGTTAGAAGGAGGG 1686
Query 1816 CTTCAAGCCCAGTCTCTTGCGGC 1838
|| | ||| ||| | |||||||
Sbjct 1687 TTT-AGGCCTAGTTTGTTGCGGC 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75037782650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5