BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16490.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890595 jgi|Araly1|890595|Al_scaffold_0007_2581 2266 0.0
> Ahg890595 jgi|Araly1|890595|Al_scaffold_0007_2581
Length=1419
Score = 2266 bits (1227), Expect = 0.0
Identities = 1357/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 96 ATGGTATCGGTGGAGGAACCTTTATCTCATTCCAATTCCACTCGCTTTCCGTTAACAACC 155
||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 1 ATGGTTTCGGTGGAGGAACCGTTATCTCATTCTAATTCCAATCGCTTTCCGTTAACAACC 60
Query 156 GATTTCTACGGTTCATCATCGCCGTCGGCGGCGAGGTTACACCGTCAAGCTGGCCGGTCG 215
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATTTCTACGGTTCATCGTCGCCGTCGGCGGCGAGGTTACACCGTCAAGCTGGCCGATCG 120
Query 216 ATGAGAACAGTGAGATCTAACTTCTATCAAAGCGGAGATCAATCTTGCTCATTCGTCGGC 275
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 ATGAGGACAGTGAGATCTAACTTCTACCAAAGCGGTGATCAATCTTGCTCATTCGTCGGC 180
Query 276 TCAATCGGCGATAAATCAGAGTATGCGTCGGAGTTTCTCTCGGATTCCGTCATCGACATG 335
|| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 181 TCTATCGGCGATAAATCGGAGTATGCGTCGGAGTTTCTGTCAGATTCCGTCATCGACATG 240
Query 336 AGACTCGGCGAGCTTGCTTTGAAAAACAGTAATTCTCTCAATTCAAACGCTTCCTCAATG 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGACTCGGCGAGCTTGCTTTGAAAAACAGTAATTCTCTCAATTCAAACGCTTCCTCAATG 300
Query 396 AAAGAGGAAGCGTTTCTCGACATTTCTCAGGCGTTTAGTGATTTTTCCGCTTGTAGTAGT 455
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAGGAAGCGTTTCTTGACATTTCTCAGGCGTTTAGTGATTTTTCCGCTTGTAGTAGT 360
Query 456 GATATCTCCGGCGAGTTACAGCGTCTTGCTTGCTTGCCGTCGCCGGAGGCTGATAGAAAT 515
|||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 361 GATATCTCCGGCGAGTTACAGCGTCTAGCTTGCTTGCCGTCGCCGGATTCTGAGAGAAAT 420
Query 516 GAGAGCGGCGGAGATAACGAAGCGGAGCATGATCCAGAGTTAGAGAGAGAGCCTTGTCTA 575
||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||
Sbjct 421 GAGAGCGGCGGAGATAACGAAGCGGCGCAGGATCCGGAATTAGAGAGAGAGCCTTGTCTA 480
Query 576 GGGTTTCTACAGAGAGAAAACTTCTCTACAGAGATTATCGAGTGTATTTCGCCGGAAGAT 635
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GGGTTTCTACAGAGGGAAAATTTCTCTACGGAGATTATCGAGTGTATTTCGCCGGAAGAT 540
Query 636 CTGCAGCCAACTGTGAAACTATGCATCGACGGACTTCGTTCCT-CTTCGGTGGCGATAAA 694
||||| |||||||||||||| || || ||||||||||| || | ||||||||||||||||
Sbjct 541 CTGCAACCAACTGTGAAACTCTGTATTGACGGACTTCGCTC-TACTTCGGTGGCGATAAA 599
Query 695 GCGATCTGCTGCGGCGAAGCTACGGCTATTGGCGAAGAATCGAGCGGATAATCGTGTGTT 754
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 600 GCGATCTGCTGCGGCGAAGCTGCGGCTACTGGCGAAGAATCGAGCGGATAATCGTGTGTT 659
Query 755 GATTGGGGAATCTGGAGCTATTCAAGCTTTGATTCCACTTCTTCGTTGTAACGATCCATG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATTGGGGAATCTGGAGCTATTCAAGCTTTGATTCCACTTCTTCGTTGTAACGATCCATG 719
Query 815 GACGCAAGAGCACGCAGTTACAGCTCTGTTAAACCTCTCGTTACACGACCAGAACAAAGC 874
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 720 GACGCAAGAGCACGCAGTTACAGCTCTCTTGAACCTCTCTTTACACGACCAGAACAAAGC 779
Query 875 TGTAATCGCCGCAGGAGGAGCGATTAAATCACTAGTGTGGGTACTCAAAACGGGGACGGA 934
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 780 TGTAATCGCTGCAGGAGGAGCGATTAAATCACTAGTGTGGGTTCTCAAAACTGGGACGGA 839
Query 935 GACTTCAAAGCAGAACGCTGCATGTGCTTTGCTTAGTTTGGCGCTATTGGAGGAGAACAA 994
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 840 GACTTCAAAGCAGAACGCTGCATGCGCGTTGCTTAGTTTGGCGCTATTGGAGGAGAACAA 899
Query 995 AGGCTCAATCGGAGCTTGCGGTGCTATTCCGCCGCTGGTTTCTCTTCTGTTGAACGGATC 1054
||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 900 AGGCTCAATCGGAGCCTGTGGTGCGATTCCGCCGCTGGTTTCTCTTTTGTTGAACGGATC 959
Query 1055 TTGCAGGGGAAAGAAGGATGCGT-TGACGACGCTCTACAAGCTGTGTACGCTTCAGCAAA 1113
|||||| || ||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 960 TTGCAGAGGCAAGAAGGATGC-TCTGACGACGCTTTACAAGCTGTGTACGCTTCAGCAAA 1018
Query 1114 ACAAGGAGAGAGCGGTCACTGCTGGAGCGGTGAAGCCGTTGGTGGACCTTGTGGCTGAGG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACAAGGAGAGAGCGGTCACTGCTGGAGCGGTGAAGCCGTTGGTGGACCTTGTGGCTGAGG 1078
Query 1174 AAGGGACTGGTATGGCGGAGAAAGCTATGGTGGTTCTGAGTAGCCTTGCAGCGATAGATG 1233
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 1079 AAGGGACTGGAATGGCGGAGAAAGCGATGGTGGTTCTGAGTAGCCTGGCAGCGATTGACG 1138
Query 1234 ATGGCAAAGAGGCTATTGTCGAGGAAGGAGGGATCGCAGCGCTTGTTGAGGCCATCGAGG 1293
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGGTAAAGAGGCTATTGTTGAGGAAGGAGGGATCGCAGCGCTTGTTGAGGCCATCGAGG 1198
Query 1294 ATGGATCTGTGAAAGGGAAAGAATTTGCGATCTTGACGCTGTTGCAGCTTTGTTCTGATA 1353
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1199 ATGGATCTGTGAAAGGGAAAGAATTTGCGATCTTGACACTGTTGCAGCTTTGTTCTGATA 1258
Query 1354 GCGTTAGAAACCGTGGGTTGCTTGTGAGGGAAGGCGCGATTCCTCCGCTTGTGGGCCTCT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 GCGTTAGAAACCGTGGGTTGCTTGTGAGGGAAGGCGCGATTCCTCCGCTTGTGGGTCTCT 1318
Query 1414 CTCAGAGCGGCTCCGTCAGTGTTAGAGCTAAGCGCAAGGCAGAAAGACTTCTGGGGTATC 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTCAGAGCGGCTCCGTCAGTGTTAGAGCTAAGCGCAAGGCAGAAAGACTTCTGGGGTATC 1378
Query 1474 TTCGGGAGCCAAGGAAGGAGGCAAGTTCATCAAGCCCATGA 1514
| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1379 TACGGGAGCCAAGGAAGGAGGGAAGTTCATCAAGCCCTTGA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5