BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16510.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946608 jgi|Araly1|946608|scaffold_702837.1 1110 0.0
> Ahg946608 jgi|Araly1|946608|scaffold_702837.1
Length=727
Score = 1110 bits (601), Expect = 0.0
Identities = 688/730 (94%), Gaps = 6/730 (1%)
Strand=Plus/Plus
Query 13 TTCGAAATGGACGACGGAGAAGGCATGGAAACTGCAGCGGCAGAGCTTGAGAGACTCCAA 72
||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1 TTCGAAATGGAAGACGGAGAAGGCATGGAGGCTGCAGCGGCGGAGCTTGAGAGACTCCAA 60
Query 73 ATTGAAATCCTCCACAAAATCTCCATTCTTGAGAGCTCTTTTCTCCCACAGAATTCCTCT 132
|||||||||||||| | |||||| | || ||||||||||||||||||||||| |||||
Sbjct 61 ATTGAAATCCTCCATAGAATCTCTGTCCTCGAGAGCTCTTTTCTCCCACAGAACTCCTCC 120
Query 133 GCTGCTCCGTCGCCTTCTCTACCGGTTGATGAAAACGAAACTGTGACTCGCCTCTCCACC 192
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGGCTCCGTCGTCTTCTCTACCAGTTGATGAAAACGAAACTGTGACTCGCCTCTCCACC 180
Query 193 ATTCTCCAGTCCGGCGGCGTTAACGACTTCTGCTTCAAGAGAGTTGCTACCGATTACTAT 252
||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 181 ATTCTCCGGTCTGGCGGCGTTAACGATTTCTGCTTCAAGAGAGTTGCTCCCGATTACTAT 240
Query 253 GACTGGCCTCTCGAATCTCGTCGCGACGTTCTCGGCGCTTCCTCAGTCGACCATCTCTGC 312
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GACTGGCCTCTCGAATCTCGTCGCGACGCTCTCGGCGCTTCCTCAGTCGACCATCTCTGC 300
Query 313 AAGAGTATTGTTCTGGTTAATACTCAAGCTGCATCAAATATTTTGGATTGCAGTGATC-C 371
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 301 AAGAGCATTGTTCTGGTTAATACTCAAGCTTCATCAAATATTTTGGATTGCAGTGATCGC 360
Query 372 AAACAACTCAAAATACTATGTGGTTGTGGTTCAGTATACTGCTAGATTCAATGCTGAAGC 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 -AACAACTCAAAATACTATGTGGTTGTGGTTCAGTATACTGCTAGATTCAATGCTGAAGC 419
Query 432 AGTGAAGCAGTTTCTTTATTCACTAAACGAGGGCAAGATCCCAAAGAAAAGATTTAATCT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AGTGAAGCAGTTTCTTTATTCACTAAACGAGGGCAAGATCCCAAAGAAAAGATTTAA-CT 478
Query 492 -GAGACTTGCTCCTGAGGAGACGTCGATTAAATTGACGGGGTTTGAGCATAATGGGGTAA 550
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 479 TGAGACTTGCTCCTGAGGAGACGTCGATTAAATTGACAGGGTTTGAGCACAATGCCGTAA 538
Query 551 CCTGTATTGGTATGAAGACAAACATACCGGTTATATTGGATGAGGCTATAACCAAACTTA 610
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 539 CCTGTATTGGTATGAAGACAAACATACCGGTGATATTGGATGAGGCCATAACCAAACTTA 598
Query 611 AACCGGATTTCTTCTGGTTGGGTGGTGGAGAAATCGATCTGAAGCTCGGTGTCAGAACAT 670
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 599 AACCAGACTTCTTCTGGTTAGGTGGTGGAGAAATCGATCTGAAGCTCGGTGTTAGAACAT 658
Query 671 CCGAATTCCTTGAATTTGTGAAACCATTCATTGTTCCTTGCAGTTGAAATCAGGAATATG 730
| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 659 CTGAATTCCTTGAATTTGTGAAACCATTCATCGTTCCTTGCAGCTGAACTCAGGAATAT- 717
Query 731 T-ATAACACT 739
| ||||||||
Sbjct 718 TCATAACACT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5