BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16515.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493225 jgi|Araly1|493225|fgenesh2_kg.7__2658__AT4G16515.1         765    0.0  


> Ahg493225 jgi|Araly1|493225|fgenesh2_kg.7__2658__AT4G16515.1
Length=504

 Score =  765 bits (414),  Expect = 0.0
 Identities = 482/513 (94%), Gaps = 12/513 (2%)
 Strand=Plus/Plus

Query  1    ACACCAATTAACAACATTTCAAACT-TTCTTTGTCCTGCTCTAGTCTCATCTCCCTGTAT  59
            ||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct  1    ACACCAATTAACAACATTTCAAACTATT-TTTGTCTTGCTCTAGTCTCATCTCCCTGTAT  59

Query  60   ACAGACACAGCAT-ATATACACAAGTATCTCAAGAACAAGAAGAAGAATAAGAGAAGTCA  118
            ||||||||||| | ||||  |||||||||| ||||||||||||||||| || ||||||||
Sbjct  60   ACAGACACAGC-TCATAT-TACAAGTATCTTAAGAACAAGAAGAAGAAGAAAAGAAGTCA  117

Query  119  TGTCTTGCTCTTTGAGGAGTGGACTCGTGATAGTGTTCTGTTTCATTCTTCTGCTTTTGT  178
            |||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  118  TGTCTTGCTCTGGGAGGAGTGGACTCGTGATGGTGTTTTGTTTCATTCTTCTGCTTTTGT  177

Query  179  CTTCCAATGTTGGATGTGCCTCTGCCGCTCGTCGTTTAAGGTCACATAAGCATCATCATC  238
            |||||||||||||||||||| ||||||||||||| ||| |||| ||||||   |||||||
Sbjct  178  CTTCCAATGTTGGATGTGCCGCTGCCGCTCGTCGGTTAGGGTCTCATAAG---CATCATC  234

Query  239  ACAAGGTTGCTTCTTTGGACGTCTTCAATGGTGGAGAAAGGAGGCGGGCGTTGGGTGGAG  298
            ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct  235  ACAAGGTTGCTTCTTTGGACGTCGTCAATGGTGGAGAAAGGAGGCGAGCGTTGGGTGGAG  294

Query  299  TCGAGACAGGGGAAGAAGTAGTAGTCATGGATTATCCTCAGCCTCATCGTAAGCCTCCGA  358
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  295  TCGAGACAGGGGAAGAAGTAGTGGTCATGGATTATCCTCAGCCTCATCGTAAGCCTCCCA  354

Query  359  TCCACAACGAGAAGTCTTAATTACCCGATCCATATATACCAGT-CTCTCTAAATATATCA  417
            |||||||||||||||||||||||||||||||||||||  |  | ||||||||||||||||
Sbjct  355  TCCACAACGAGAAGTCTTAATTACCCGATCCATATAT-GC--TCCTCTCTAAATATATCA  411

Query  418  TACTGTTATATGCATATGCATTCACCATGTTGGTGGTTGTAATGACTCTTGTGCTATCTC  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  412  TACTGTTATATGCATATGCATTCACCATGTTGGTGGTTGTAATGACTCTTGTGCTATCTA  471

Query  478  TATATATATTCATGACCAACTTCTTTGTTCTCT  510
            |||||||||||||||||||||||||||||||||
Sbjct  472  TATATATATTCATGACCAACTTCTTTGTTCTCT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5