BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16520.1

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946605 jgi|Araly1|946605|scaffold_702834.1                        628    1e-179


> Ahg946605 jgi|Araly1|946605|scaffold_702834.1
Length=409

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 381/401 (95%), Gaps = 2/401 (0%)
 Strand=Plus/Plus

Query  116  AGGCGTGGAAGGAATGGCAAAAAGCTCGTTCAAGCAAGAGCATGACTTAGAGAAGAGAAG  175
            |||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||
Sbjct  11   AGGCGTGGAAGGAATGGCTAAAAGCTCCTTTAAGCAAGAGCATGACCTAGAGAAGAGAAG  70

Query  176  GGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCGGTGATTGTTGAGAA  235
            ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  71   GGCGGAGGCTGCTCGGATTAGAGACAAGTATCCTGATAGGATTCCGGTGATTGTTGAGAA  130

Query  236  GGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCT  295
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  131  GGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAATACCTAGTCCCGGCTGATCT  190

Query  296  GACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGC  355
            |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  191  GACTGTGGGGCAATTTGTGTATGTTATTCGCAAAAGAATCAAATTAAGTGCAGAAAAGGC  250

Query  356  TATCTTCATATTCGTGGACAATGTTCTTCCTCCAGCAGGTGCGCTCATGTCTTCTGTGTA  415
            |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||| |||||
Sbjct  251  TATCTTCATATTTGTGGACAACGTTCTTCCCCCAACAGGTGCGCTCATGTCTTCCGTGTA  310

Query  416  CGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATT  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  CGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATT  370

Query  476  TGGATTTGGATCTCCATAATAGAGACCTCTTGCTGGATATT  516
            |||||||||||||||||||||||  | |||| |||||||||
Sbjct  371  TGGATTTGGATCTCCATAATAGAT-C-TCTTACTGGATATT  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26228566896


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5