BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16550.1
Length=2232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890578 jgi|Araly1|890578|Al_scaffold_0007_2564 2350 0.0
Ahg920894 jgi|Araly1|920894|scaffold_102175.1 309 6e-83
Ahg946595 jgi|Araly1|946595|scaffold_702824.1 265 1e-69
> Ahg890578 jgi|Araly1|890578|Al_scaffold_0007_2564
Length=1752
Score = 2350 bits (1272), Expect = 0.0
Identities = 1600/1750 (91%), Gaps = 56/1750 (3%)
Strand=Plus/Plus
Query 502 GATGGGTATTACGCTACAAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAG 561
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 GATGGGTATTACTCTACGAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAG 99
Query 562 TTCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 100 TTCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCAAG 159
Query 622 AAAGAGAGTGTGATAATCCTTCTCGAACCATCGAAGAAAGCTGTCATTGTGACCGGAGAA 681
|||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 160 AAAGAGAGTGTGATTATCCTTCTCGAACCATTGAAAAAAGCTGTTATTGTGACCGGAGAC 219
Query 682 GCACCCAAAGAGAGCAAACACGATTCTTCTCACCGTAAGTATGGAACCGCCACGGGTCTA 741
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 220 GCACCTAAAGAGAGCAAACACGATTCTTCTCACCGCAAGTATGGAACCGCCACGGGACTA 279
Query 742 ATCTGTGACTGCTGTGAAATCAGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ATCTGTGACTGCTGTGAAATCAGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGA 339
Query 802 CTTATCCTCTCCAAGCAGAAGATCAATCTTCGTGTTCCTATTTTCTGTTCCTGTAAGATC 861
|| |||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 340 CTCATCCTCTCCAAGAAGAAGATCAATCTTCGCGTTCCTAATTTCTGTTCTTGTAAGATC 399
Query 862 ACTAATCTTCAAAATG-------T-TT-T-GtttttttGTCT-T-ATTTTTGTCGGAGGT 909
| |||||||| ||||| | || | ||||||| | | | ||||||||||||||
Sbjct 400 ATTAATCTTC-AAATGTTTTTTTTCTTCTCTTTTTTTTTTTTGTCTTTTTTGTCGGAGGT 458
Query 910 GCAAGAATGCCTACTGATGCTTCTCCTAACATCATTCGTGGTTATAACCCAGAAGACTTA 969
||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |
Sbjct 459 GCAAGAATGCCTACTGATGCTCCTGCTAACATCATTCGTGGCTATAACCCAGAAGA---A 515
Query 970 TCAGTTGAGCTTCTTTTAGAAACTAGTCTTCGTTGTTTTAGTATAGTAAACGTATCTGAC 1029
| || || | |||||||| |||| ||||||| | ||| |||||
Sbjct 516 --A------CT------AG---C----CTTCGTTGATTTA-TATAGTATA-GTACCTGAC 552
Query 1030 ATTTTTCATGGGTTTGTGTTGTTGATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTT 1089
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 553 ATTTTTCATGGGTTTGTGTTG---ATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTG 609
Query 1090 GCTCATCTTCGTGGACTTAATCC-AGAAGGTTGTCGTGGCACTGACCCTTTTGATCCGGC 1148
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||
Sbjct 610 GCTCATCTTCGTGGACTTAA-CCGAGAAGGTTGCCGTGGCACTGACCCTTTTGATCCAGC 668
Query 1149 GTTCACTGGTCCGACCATACGACCACACCCGTCAGTGTTGGAGGGATCCACGAGTGCTTA 1208
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 669 ATTCACTGGTCCGACCATACTACCACACCCGTCAGTGTTGGAGGGATCCACCAGTGCTTA 728
Query 1209 CGAGACAAAGCAGCTCTCAAACGGTGGTCTGTATCTGCGAATTGACATGCCTGGTGTCCC 1268
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 729 CGAGACAAAGCAGCTCTCAAACGGAGGTCTGTATCTGCGTATTGACATGCCTGGTGTCCC 788
Query 1269 TAGCGACGGCTTCATTGTGGCAGTGGACGGCAATGGTGTCGTCACCATCATGGGACGAGC 1328
||||| | | ||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 789 TAGCGGCAGATTCATGGTGGCAGTGGACGGCGACGGTGTCGTCACCATCATGGGACGAGC 848
Query 1329 TCCTGCGACTATGCACGACT-CAAATGGTTTTTACGCTATGAACAATCCGTACCAAGCGA 1387
||||||||| |||||||| | | ||||| | |||| ||||||||||||||||||||||||
Sbjct 849 TCCTGCGACCATGCACGA-TACGAATGGGTATTACACTATGAACAATCCGTACCAAGCGA 907
Query 1388 ACGGACCAAAAGGGTTTGCTGAGTTCAAGTATCTGGAAGATACCCATGATCTATTCGTGA 1447
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 908 ACGGACCAAAAGGGTTTACTGAGTTCAAGTATCTGGAAGAAACCCATGATCTGTTCGTGA 967
Query 1448 GGCTTGATTTGCCTGGAGTCAAGAAAGAGACTGTGGGGTTTTATGCAATAAACAACCAGT 1507
|||||||||| || |||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 968 GGCTTGATTTCCCAGGAGTCAAGAAAGAGAA-G-GGG-TTTTATGCAATAAACAACCAGT 1024
Query 1508 TTCAAGCAAATGGGCCAAAAGGGTTCATGGAGTTCAAAATGTTGGAGAACGAAGATATGT 1567
|| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1025 TTTTAGCAACTGGACCAAAAGGGTTCATGGAGTTCAAGATGCTGGAGAACGAAGATATGT 1084
Query 1568 ACGTTCGGATTGATTTTCCCGGCGTTCCAAGAGATGGTGTGAGGGTTTTTCTTGACCAGT 1627
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1085 TCGTGAGGATTGATTTTCCCGGCGTTCCAAAAGATGGTGTGAGGGTTTTTCTTGACCAGT 1144
Query 1628 CGAAGAAAGCTGTTTGTATCTTCGCCGACGCACCAAAGGAACACAAATACGACTACTCTG 1687
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1145 CCAAGAAAGCTGTTTGTATCTTCGCCGAAGCACCAAAGGAACACAAATACGACTACTCTG 1204
Query 1688 AACGGAACTACGGTACCTCCACCGGACTCGTCTGCAAATGCTGTGAAATCTCCGGATTCA 1747
||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1205 AACGGAACTACGGTACCAGCACCGGACTTGTCTGCAAATGCTGTGAAGTCTCCGGCTTCA 1264
Query 1748 CTTC-CTTCATGT-CTGATGGTGTTCTTAGGCTTCTCCTCACCAAGTCCAACATCACTCC 1805
|||| || ||||| | |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1265 CTTCTCT-CATGTGC-GATGGTGTTCTTAGGCTTATTCTCACCAAGTCCAACATCACTCC 1322
Query 1806 ACAACGCTCCTCCTGCATCTCGTTTCTTGCTGGCCCAGATTTCAGAGAAGATCTGCGTGG 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1323 ACAACGCTCCTCCTGCATCTCGTTTCTTGCTGGCCCAGATTTCAGAGAAGATCTCCGTGG 1382
Query 1866 CAACGGTCCTCACAAATTTCCCCATGGCACGGATCCTAATG-AT-CC-GAAATTAACGGG 1922
| | ||||||||||||||||||||||||||||||||||||| | || ||| ||||| ||
Sbjct 1383 CGATGGTCCTCACAAATTTCCCCATGGCACGGATCCTAATGCAGACCCGAAGTTAACTGG 1442
Query 1923 TCGGATATTGATGCCACACCCATGTGTGAACTATGGATCAGAGATGGCTTATGAGTCCAA 1982
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1443 TCGGATATTGATGCCACACCCATGTGTGAACTACGGATCGGAGATGGCTTATGAGTCCAA 1502
Query 1983 GCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTCCCAAAGAGAA 2042
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1503 GCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTCCTAAAGAGAA 1562
Query 2043 CTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGTGAAGCTCCTGCCATTAG 2102
|||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||||
Sbjct 1563 CTTCACTGTCGCAGTCATGAATAGGAGAGTGAAGGTGGCTGGTGAAGCTCCTGCCGTTAG 1622
Query 2103 CCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATGCTCTCCACTCCTTTCGA 2162
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1623 CCACGACTCAAGTGGACGTTTCTACTCTGGTGACGTTGCTATGCTCTCCACACCTTTCGA 1682
Query 2163 CATTCCCATCCGTAAGATCAAGATCATTGCTAAGAACGGTGTCATTCGTCTGATCATCCC 2222
| ||||| ||||||||||||||| |||||| ||||||||||| |||||| ||||||||||
Sbjct 1683 CCTTCCCGTCCGTAAGATCAAGACCATTGCCAAGAACGGTGTGATTCGTTTGATCATCCC 1742
Query 2223 TCCCGTTTGA 2232
||| ||||||
Sbjct 1743 TCCTGTTTGA 1752
Score = 189 bits (102), Expect = 8e-47
Identities = 118/126 (94%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 503 ATGGGTATTACGCTACAAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAGT 562
||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 872 ATGGGTATTACACTATGAACAATCCGTACCAAGCGAACGGACCAAAAGGGTTTACTGAGT 931
Query 563 TCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAGA 622
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 932 TCAAGTATCTGGAAGAAACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAGTCAAGA 991
Query 623 AAGAGA 628
||||||
Sbjct 992 AAGAGA 997
> Ahg920894 jgi|Araly1|920894|scaffold_102175.1
Length=792
Score = 309 bits (167), Expect = 6e-83
Identities = 314/384 (82%), Gaps = 14/384 (4%)
Strand=Plus/Plus
Query 1856 ATCTGCGTGGCAACGGTCCTCACAAATTTCCCCATGGCACGGA-TCCTAATGATCCGAAA 1914
|||| ||| || | ||||||||||||||||| |||| | |||| ||| ||| ||||
Sbjct 395 ATCTTCGTAGCTATGGTCCTCACAAATTTCCGCATGCCTCGGACCCCT-TTGACCCGACG 453
Query 1915 TTAACGGGTCGGATATTGATGCCACACCCATGTGTGAAC-T-ATGGATCAGAGATGGCTT 1972
|||||||||||| | |||| |||||||||||||||| | | | ||||| |||||||| |
Sbjct 454 TTAACGGGTCGGGTGTTGAAGCCACACCCATGTGTG--CTTCAAGGATCGGAGATGGCCT 511
Query 1973 ATGAGTCCAAGCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTC 2032
||||||| ||| |||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 512 ATGAGTCGAAGAAGCTCCAAAACGGCAGCCTATACGTGCGTGTAGACATGCCAGGCGTTC 571
Query 2033 CCAAAGAGAACTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGTGAAGCTC 2092
||||||| | ||||| || | || | ||| |||||||||| |||||| ||||||||||
Sbjct 572 CCAAAGACAGGTTCACCATCTCCGTTACGAACGGGAGAGTGATGGTGACTGGTGAAGCTC 631
Query 2093 CTGCCATTAGCCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATGCTCTCC- 2151
||||| |||||||||||||| |||| || ||||| |||| ||||| |||||||| |
Sbjct 632 CTGCCGTTAGCCACGACTCAGGTGGTCGGTTCTATTCTGGCGACGTGGCTATGCT-TGAT 690
Query 2152 ACTCCTT-TC-GACATTCCC-ATCCGTAAGATCAAGATCATTGCTAAGAACGGTGTCATT 2208
|||| || || | ||| ||| | |||| |||||| | ||| || ||||||||||| |||
Sbjct 691 ACTC-TTATCAG-CAT-CCCTAGCCGTCGGATCAAAACCATCGCCAAGAACGGTGTGATT 747
Query 2209 CGTCTGATCATCCCTCCCGTTTGA 2232
||| |||| |||||||||||||||
Sbjct 748 CGTTTGATTATCCCTCCCGTTTGA 771
> Ahg946595 jgi|Araly1|946595|scaffold_702824.1
Length=649
Score = 265 bits (143), Expect = 1e-69
Identities = 222/261 (85%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 1966 ATGGCTTATGAGTCCAAGCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCA 2025
|||||||||||||| |||||||| | | |||| |||||||||||||||||||||||
Sbjct 360 ATGGCTTATGAGTCGAAGCAGCTCCCAGACGGCAAACTATACGTGCGTGTAGACATGCCG 419
Query 2026 GGCGTTCCCAAAGAGAACTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGT 2085
|| ||||||| || |||||||||||| | |||| ||||||| |||||| |||||| |||
Sbjct 420 GGTGTTCCCAGTGACAACTTCACTGTCTCTGTCACGAATGGGCGAGTGAAGGTGACTGGT 479
Query 2086 GAAGCTCCTGCCATTAGCCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATG 2145
|||||||||||| || ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 480 GAAGCTCCTGCCGTTGGCCACCACTCAAGTGGCCGTTTCTACTCTGGTGACGTTGCTATG 539
Query 2146 CTCTCCACTCCT-TTCGACATTCCCATCCGTAAGATCAAGATCATTGCTAAGAACGGTGT 2204
|||||||||||| || |||||||||| || | |||| ||| ||| || |||||||||||
Sbjct 540 CTCTCCACTCCTGTT-GACATTCCCAGCCATCGGATCGAGACCATCGCCAAGAACGGTGT 598
Query 2205 CATTCGTCTGATCATCCCTCC 2225
||| |||| | ||||||||
Sbjct 599 GATTGGTCTCCTTATCCCTCC 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84027080470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5