BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16563.1
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946589 jgi|Araly1|946589|scaffold_702818.1 2466 0.0
> Ahg946589 jgi|Araly1|946589|scaffold_702818.1
Length=1542
Score = 2466 bits (1335), Expect = 0.0
Identities = 1482/1552 (95%), Gaps = 14/1552 (1%)
Strand=Plus/Plus
Query 70 CTCCACTGTTTTATTATCCACCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 129
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCACTGTTTTATCATCCGCCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 60
Query 130 TCTCCAA-TACTATTTCCACTTCTCTGTGTCATCATTATCAACAcctcttctcct-ccat 187
||| ||| |||| |||| |||||||||| | |||| ||||||||||||||| || || |
Sbjct 61 TCT-CAATTACTGTTTCTACTTCTCTGT-T--TCATCATCAACACCTCTTCTACTACC-T 115
Query 188 ctctcccactctctctcaacctcaaaacactcttcatctcctctccaccttctcaaatca 247
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTCTCTCACTCTCTCTCAACCTCAAAACACTCTTCATCTCCTCTCCACCTTCTCAAATCA 175
Query 248 tcctcctccCGTTCCTCCGCCCGCTTCCGCCGCCACCACCacaaacaacaacaacaacaa 307
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 176 TCCTCCTCCCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAAC-AC--CAACAACAA 232
Query 308 cTTTCACTCCCTATCTCCTCCGGCAGCGATTATCTCATCTCCCTCTCCGTCGGCTCCTCC 367
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 233 CTTTCACTCCCTATCTCCTCCGGCAGCGATTACCTCATCTCCCTCTCCGTCGGCTCCTCC 292
Query 368 TCCTCAGCCGTCTCCTTGTACTTGGACACCGGAAGCGACCTCGTTTGGTTCCCTTGCCGT 427
||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 293 TCCTCAGCCGTCTCCCTCTACTTAGACACCGGAAGCGACCTCGTCTGGTTCCCTTGCCGT 352
Query 428 CCTTTCACTTGCATCCTCTGTGAATCCAAACCActccctccttctcctccttcatctctc 487
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 353 CCTTTCACTTGCATCCTCTGTGAATCCAAACCACTCCCTCCTTCTCCTCCACCCTCTCTC 412
Query 488 tcctcctccgccaccaccgtctcctgctcctccccttcttgctccgccgctcactctTCC 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCCTCCTCCGCCACCACCGTCTCCTGCTCCTCCCCTTCTTGCTCCGCCGCTCACTCTTCC 472
Query 548 CTTCCCTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTTCATCGAAACCGGA 607
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 473 CTTCCTTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTACATCGAAACCGGT 532
Query 608 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGctct 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGCTCT 592
Query 668 ctcgtcgcaaaactctactccgactcactctctctcccttccgtctccgtctctAACTTC 727
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 CTCGTCGCAAAACTCTTCTCCGACTCACTCTCTCTCCCTTCCGTCTCCGTCGCTAACTTC 652
Query 728 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 712
Query 788 GGACGTCTCTCTCTTCCCGCTCAGCTCGCTGTTCACTCTCCTCATCTCGGTAATAGCTTC 847
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 713 GGACGTCTCTCTCTTCCCGCTCAGCTCTCTGTTCACTCTCCTCATCTCGGTAACAGCTTC 772
Query 848 TCTTATTGTCTCGTCTCTCACTCTTTTGACTCGGACCGAGTCCGCCGTCCGAGTCCGCTC 907
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 773 TCTTATTGTCTCGTCTCTCACTCGTTTGACTCAGACCGAGTCCGCCGTCCGAGTCCACTC 832
Query 908 ATCCTCGGTCGCTTCGTCGATAAAAAAGAGAAACGTGTCGGAACCACCGATGATCATGAT 967
|| ||||| || |||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 833 ATACTCGGCCGTTTCGTCGATAAAAAAGAGAAACGTGTTGCAACCACCGATGATGATGAT 892
Query 968 GACGGTGATGATGA-GAAGAAGAAGAAAAATGAGTTCGTCTTCACAGAGATGCTTGAAAA 1026
|| |||||||| || |||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 893 GATGGTGATGA-GACGAAGAAGAAGAAGAATGAATTCGTCTTCACCGAGATGCTTGAAAA 951
Query 1027 CCCAAAGCATCCCTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1086
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CCCAAAGCATCCTTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1011
Query 1087 TATTCCAGCTCCGGCGATGCTCAGAAGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1146
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1012 TATTCCTGCTCCGGCGATGCTCAGACGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1071
Query 1147 TGACTCAGGGACAACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1206
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGACTCAGGGACGACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1131
Query 1207 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1191
Query 1267 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1251
Query 1327 TGCCGGGAACAGATCCAGTGTGACGCTCCCCAGGAGAAATTATTTTTACGAATTTATGGA 1386
||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1252 TGCCGGGAATGGATCCAGTGTTACGCTCCCTAGGAGAAATTATTTTTATGAATTTATGGA 1311
Query 1387 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAATTGGATGTTTGATGTTGATGAACGGTGG 1446
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1312 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAGTTGGATGTTTGATGTTGATGAACGGTGG 1371
Query 1447 AGATGAATCAGAACTTCGAGGTGGTACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1506
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1372 AGATGAATCGGAGCTTCGAGGTGGGACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1431
Query 1507 GTTTGAGGTGGTTTATGATCTGTTGAACAGAAGAGTTGGGTTT-GCTAAGAGGAAGTGCG 1565
|||||||||||| |||||||||||||||||||||||||| ||| || |||||||| ||||
Sbjct 1432 GTTTGAGGTGGTCTATGATCTGTTGAACAGAAGAGTTGG-TTTCGCAAAGAGGAAATGCG 1490
Query 1566 CATCTTTATGGGATTCGCTTAAATAAGCCTAACATGCGCTGAAGCCAATAAA 1617
|||||||||||||| ||||||| | | ||||||||||||||||||||||||
Sbjct 1491 CATCTTTATGGGATACGCTTAACCAGGGCTAACATGCGCTGAAGCCAATAAA 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5