BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16566.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493219 jgi|Araly1|493219|fgenesh2_kg.7__2652__AT4G16566.1 955 0.0
Ahg946588 jgi|Araly1|946588|scaffold_702817.1 758 0.0
> Ahg493219 jgi|Araly1|493219|fgenesh2_kg.7__2652__AT4G16566.1
Length=692
Score = 955 bits (517), Expect = 0.0
Identities = 578/608 (95%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 69 TCCAAACGTAAGAATTATGGCGGGAGTGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 128
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 38 TCCAAACGTAAGAATAATGGCGGGAGCGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 97
Query 129 AAATCCAACCACTACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGACAT 188
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 98 AAATCCAACCACCACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGATAT 157
Query 189 CAAGCCTGCAGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACATATTCCTACTGTGAA 248
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 158 CAAACCTGCCGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACACATTCCTACTGTGAA 217
Query 249 TGACCTTCAGAGAAGAGATGAAGACTACTCACTTGTAAGACACATGCTTAGTGTGGGACA 308
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 218 TGACCTTCAGAGAAGAGATGAAGACTATTCACTAGTAAGACACATGCTTAGTGTGGGACA 277
Query 309 ACAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCACC 368
| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 278 AGAACTGTTGCGGAAAGATGCTCCTCAAAACATTCATAGATTTGGTTTTCACCAGCCACC 337
Query 369 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTGCCTTATGTGCCCAGATG 428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 338 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCTTTGCCTTATGTGCCCAGATG 397
Query 429 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCCGAGACACT 488
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 398 GAAAGCCATCAAGTACAAGCCTTTGGGACCTTTGGGTGGATTTATTGAAGCAGAGACACT 457
Query 489 GCTAGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTGAACCCAACTTGTTTAACCGC 548
||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 458 GCTGGAGAAGATAAGGCCTCTTCTTTCAAAGGTTTAACTGAACCCAACTTACGTAACTGC 517
Query 549 ATTGCGTTGCTTCTCTTTGCTAAAACTGTGCAATATCTCTTTTCTATTCTTTTGCTGGCA 608
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 518 ATTGCCTTGCTTCTCTTTGCTAAAACTGTGGAATATCTCTTTTCTATTCTTTTGCCGGGA 577
Query 609 AATCTGT-GAACAAATGCCAAATATTATTAGAGATTTTGTATATGAAAGAAGGATGTGTC 667
||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 578 AATCTGTTGT-CAAATGCCAAATATTATTGGGGATTTTGTATATGAAAGAAGGATGTGTC 636
Query 668 AAGTAATT 675
||||||||
Sbjct 637 AAGTAATT 644
> Ahg946588 jgi|Araly1|946588|scaffold_702817.1
Length=483
Score = 758 bits (410), Expect = 0.0
Identities = 457/480 (95%), Gaps = 1/480 (0%)
Strand=Plus/Plus
Query 69 TCCAAACGTAAGAATTATGGCGGGAGTGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 128
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 5 TCCAAACGTAAGAATAATGGCGGGAGCGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 64
Query 129 AAATCCAACCACTACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGACAT 188
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 65 AAATCCAACCACCACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGATAT 124
Query 189 CAAGCCTGCAGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACATATTCCTACTGTGAA 248
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 125 CAAACCTGCCGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACACATTCCTACTGTGAA 184
Query 249 TGACCTTCAGAGAAGAGATGAAGACTACTCACTTGTAAGACACATGCTTAGTGTGGGACA 308
||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 185 TGACCTTGAGATAAGAGATGAAGACTACTCACTTGTAAGACTCATGCTTAATGTGGGACA 244
Query 309 ACAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCACC 368
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 245 AGAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCGCC 304
Query 369 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTGCCTTATGTGCCCAGATG 428
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 305 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTACCTTTTGTGCCCAGATG 364
Query 429 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCCGAGACACT 488
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 365 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCAGAGACACT 424
Query 489 GCTAGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTGAACCCAACTTGTTTAACCGC 548
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 425 GCTGGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTCTACC-AACTTACGTAACCGC 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5