BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16580.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493218 jgi|Araly1|493218|fgenesh2_kg.7__2651__AT4G16580.1 2909 0.0
> Ahg493218 jgi|Araly1|493218|fgenesh2_kg.7__2651__AT4G16580.1
Length=1847
Score = 2909 bits (1575), Expect = 0.0
Identities = 1761/1851 (95%), Gaps = 12/1851 (1%)
Strand=Plus/Plus
Query 1 TTCTTTCGTGAAATTTGTCATCTCTTCTTTCAGAAACTTATCTGGATTCTAGCCAATTTC 60
|||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 TTCTTTCGTGCAATTTGTGATCTCTTCTTTCAGAAAATTTTCTGGATTCTAGCCAATTTC 60
Query 61 TGTTGTGACTTTG---ACATTATCTTCTCCAGAAGGAGGTG--AAAAGAGA-ATTTGTGG 114
| ||||||||| | |||||||||||||| || || ||| |||||||| ||| | |
Sbjct 61 TCTTGTGACTTAGAACACATTATCTTCTCCGGAGGGTTGTGAAAAAAGAGACGTTT-TTG 119
Query 115 GTCCTGGTAAGTTCCGAATTCGTATTTGATTGAGCTCTGAGTTTCAAGGGTTTGTGTTGG 174
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
Sbjct 120 GTCCTGGTAAGTTCCGAATTCGTCTTTGTTTGAGCTCTGAGTTTTAAGGGTTTGTGTTCG 179
Query 175 ATCAATCTTTAGATTCGTTGGTG-AAAGCGTTTAAATCGACGAAAAAAGTGATGCTTTGG 233
||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 180 ATCAATCTTTAGA-TCGTTGGTGAAAAGTGTTTAAATCGACGAAAGAAGTGATGCTTTGG 238
Query 234 AAGATATGATCTTCTCTATCTCTGGTTATTACTGGGTTTCGAGATTCTTG-TGCTTAAGA 292
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 239 AAGATATGATCTTCTCTATCTCTGGTTATTACTGGGTTTCGAGATT-GTGCTGCTTAAGA 297
Query 293 TGTTACCTGTGAGAGAAAGTCTTCAGAAACAAGTTAAGATTTTGATTGGATTAGGGAATT 352
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 TGTTACCTGTGAGAGAAGGTCTTCAGAAACAAGTTAAGATTTTGATTGGCTTAGGGAATT 357
Query 353 TAGGGTTTGGTGGTTATAGAGGATTGTACACTAGATTTACTAACCCTAACGGGTTTTTAG 412
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 358 TAGGGTTTGGTGGTTATAGAGGATTGCACTCTAGATTTACTAACCCTAACGGGTTTTTAG 417
Query 413 AACCAGCTAGCTCTGATTTGTTGTTGATTAACGAAAGGAGGAATCTTTCTGTTATTGGTG 472
|||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 418 AACCTGCGAGCTCTGATTTGTTGTTGATTAACGAAAGGAGGAACCTTTCTGTTGTTGGTG 477
Query 473 CTGTTTCTCGAACTTTCTCTGTTCCTTCTGTATCTGGTCCGGCCTTTCAGGTCTGTGGAT 532
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 478 CTGTTTCTCGAACTTTCTCTGTTCCTTCAGTATCTGGTCCAGCCTTTCAGGTTTGTGGAT 537
Query 533 ATCACATTGATCTTTTGCTTTCGGATCCGTGTAAATCAATGGCGAGTTTAGGTTCTAAGT 592
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 538 ATCATATTGATCTTTTGCTTTCGGATCCGTGTAAATCAATGGCAAGTTTAGGTTCTAAAT 597
Query 593 CTTTGTTTGTGGATCGTCATTCTGCTTCTCTTGTTTCAAAGCGTTTCACTGGTGGTATGG 652
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 598 CTTTGTTTGTGGATCGTCGTTGTGATTCTCTTGTTTCAAAGCGTTTCACTGGTGGTATGG 657
Query 653 TATCTGGAGATGGTCCTAACCGTGGAAGAATCAGTATGAGACTCAGAGGTAAAGATCACA 712
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 TATCTGGAGATGGTCTTAACCGTGGAAGAATCAGTATGAGACTCAGAGGAAAAGATCACC 717
Query 713 ATGAGAAGTCTACGATCTGTGCGTATTTTGCTTATAGAGGTGCTAAGAGATGGATTTATT 772
| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 718 AGGAGAAGTCTACGATCTATGCATATTTTGCTTATAGAGGTGCGAAGAGATGGATTTATT 777
Query 773 TGAATCAGCAAAGAAGAGGAATGGGATTTAGAGGCTTGCATAGCTCACTCTCTAATCGCT 832
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 TGAATCAGCAAAGAAGAGGAATGGGATTTAGAGGCTTGCATAGCTCACTATCTAATCGCT 837
Query 833 TATCAGCTGGGAATGCGCCTGATGTCTCTTTAGATAACTCTGTTACTGACGAACAGGTTA 892
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 838 TATCAGCTGGGAATGCGCCTGATGTCTCTTTAGATAACTCTGTCACTGAAGAACAGGTTA 897
Query 893 GAGATTCTTCGGATTCTGTAGCGGCTAAGCTATGTACTAAGCCTCTGAAGCTTGTCTCGG 952
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 898 GAGATTCTTCGGATTCTGTAGCGGATAAGCTATGTACTAAGCCCCTGAAGCTTGTCTCGG 957
Query 953 GGTCGTGTTATCTACCGCATCCTGATAAAGAGGCCACTGGGGGAGAGGATGCACATTTTA 1012
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 958 GGTCGTGTTATCTACCGCATCCTGATAAAGAGGCGACTGGGGGAGAAGATGCTCACTTTA 1017
Query 1013 TCTGTGCTGAAGAGCAAGCATTAGGTGTGGCAGATGGTGTGGGGGGTTGGGCAGAGCTTG 1072
||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 1018 TCTGTGCAGAGGAGCAAGCATTGGGTGTGGCAGATGGTGTGGGAGGTTGGGCGGAGCTCG 1077
Query 1073 GTATTGATGCAGGTTACTATTCTCGGGAGCTTATGTCTAACTCAGTGAATGCAATCCAAG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTATTGATGCAGGTTACTATTCTCGGGAGCTTATGTCTAACTCAGTGAATGCAATCCAAG 1137
Query 1133 ATGAGCCTAAAGGTTCGATTGATCCAGCCAGAGTATTGGAAAAAGCTCATACTTGCACAA 1192
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACGAGCCTAAAGGTTCGATTGATCCAGCCAGAGTATTGGAAAAAGCTCATACTTGCACAA 1197
Query 1193 AGTCGCAAGGGTCTTCAACAGCTTGCATCATAGCCTTAACCAACCAGGGACTTCATGCAA 1252
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTCACAAGGGTCTTCAACAGCTTGCATCATAGCCTTAACCAACCAGGGACTTCATGCAA 1257
Query 1253 TCAATTTAGGCGACAGCGGGTTCATGGTTGTTCGTGAAGGGCATACGGTTTTCCGTTCCC 1312
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1258 TCAACTTAGGCGACAGCGGGTTCATGGTTGTCCGTGAAGGGCACACGGTTTTCCGTTCCC 1317
Query 1313 CTGTTCAACAGCATGACTTCAACTTCACCTATCAGCTGGAGAGTGGAAGAAACGGCGATT 1372
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1318 CCGTTCAACAGCATGACTTCAACTTCACCTATCAGCTGGAGAGTGGAAGAAATGGTGATT 1377
Query 1373 TGCCAAGCTCAGGTCAGGTTTTCACTGTTGCTGTCGCTCCTGGAGACGTCATAATAGCTG 1432
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1378 TGCCAAGCTCAGGTCAGGTTTTCACTGTTGCTGTCGCTCCTGGAGATGTTATAATAGCTG 1437
Query 1433 GAACAGATGGGTTGTTTGACAACCTGTACAACAACGAGATCACAGCCATAGTGGTTCACG 1492
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAACAGATGGATTATTCGACAACCTGTACAACAACGAGATCACAGCCATAGTGGTTCACG 1497
Query 1493 CTGTGAGAGCCAACATAGATCCCCAGGTAACAGCGCAGAAGATTGCAGCATTGGCGCGAC 1552
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1498 CTGTGAGAGCCAACATAGATCCTCAGGTAACAGCACAGAAGATTGCAGCATTGGCGCGAC 1557
Query 1553 AAAGAGCACAGGACAAAAACAGACAAACTCCATTCTCGACAGCAGCACAAGATGCTGGCT 1612
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAAGAGCACTGGACAAAAACAGACAAACTCCATTCTCGACAGCAGCACAAGATGCTGGCT 1617
Query 1613 TCAGATACTACGGTGGTAAGCTTGATGACATTACAGTTGTTGTCTCTTATGTGGCGGCTT 1672
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TCAGATACTACGGAGGTAAGCTTGATGACATTACAGTTGTTGTCTCTTATGTGGCGGCTT 1677
Query 1673 CGAAAGAAGAAGGAAAACATTGATGAAGAGACAAATACAGATGTGTCATGTGTTGAGTTA 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CGAAAGAAGAAGGAAAACATTGATGAAGAGACAAATACAGATGTGTCATGTGTTGAGTTA 1737
Query 1733 TAAAGTTTGTGTTTTGCAGAGACCTCTCTTGTTTTGCTTAATGGTTTGTGAGCATTCTCA 1792
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TAAAGTTTGTGTTTTGCAGAAACCTCTCTTGTTTTGCTTAATGGTTTGTGAGCATTCTCA 1797
Query 1793 TCTGATTATATTTGAtttttttGATATATATTGTAAATAAAAGATAAAGAG 1843
||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1798 TCTGATTTTATTTGATTTTTTTGATATATAT-GTAAATAAAAGAGAAAGAG 1847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5