BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16600.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329850 jgi|Araly1|329850|fgenesh1_pm.C_scaffold_7002077 1216 0.0
Ahg482539 jgi|Araly1|482539|fgenesh2_kg.4__1599__AT2G35710.1 1053 0.0
> Ahg329850 jgi|Araly1|329850|fgenesh1_pm.C_scaffold_7002077
Length=1341
Score = 1216 bits (658), Expect = 0.0
Identities = 755/801 (94%), Gaps = 10/801 (1%)
Strand=Plus/Plus
Query 1 ATGGATT-TACAAAGAACT-TTGATGTTCTCTTGTTGGGTTCTGTCTCTTTTGATCATCA 58
||||||| | || |||||| | | ||||||||||||||||||||| |||||| ||||||
Sbjct 1 ATGGATTGT-CAGAGAACTATAG-TGTTCTCTTGTTGGGTTCTGTTTCTTTTAATCATCG 58
Query 59 AAACGACAGCGTATAACGAGAAACAGCTGTTCCAGCCGCTTGAAACGGAAAACGCAAACG 118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 AAACGACAGCGTATAACGAGAAACAGCTGTTCCAGCCGTTTGAAACGGAAAACGCAAACG 118
Query 119 CGATGACCGCGGTTATGGAGCGAGGATTAAAGACGCAGCGGCGGCCGGAGCACAAGAACG 178
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 119 CGTTGACCGCGGTTATGGAGCGAGGATTAAAGACGCA---GCGGCCGGAGCACAGGAACG 175
Query 179 CTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTTCTACGTTGCGACAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 176 CTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTTCTACGTTGCTACTC 235
Query 239 GTGTCTTGATCAGATCGCTTAAGAGTCTCCACGTGGACGCTGATATCGTCGTTATAGCCT 298
|||| |||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 236 GTGTTTTGATCAGATCGCTTAAGGGTCTTCACGTGGACGCTGATATCGTCGTCATCGCCT 295
Query 299 CCCTCGACGTTCCTATCAACTGGATTCACGCTCTGGAAGAAGAAGATGGAGCTAAAGTAG 358
| ||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 296 CTCTCGACGTTCCGATCAACTGGATTCACGCTTTGGAAGAAGAGGACGGAGCTAAAGTAG 355
Query 359 TGAGAGTAGAGAATCTTGAGAATCCATACAAGAAACAAACCAACTTCGACAACAGATTCA 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 TGAGAGTAGAGAATCTTGAGAATCCGTACAAGAAACAAACCAACTTCGACAACAGATTCA 415
Query 419 AGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATTATGACCGTGTTGTAATGC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 AGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATTATGACCGTGTCGTAATGC 475
Query 479 TTGATGTCGACAATCTCTTTCTCAAGAACACCGACGAGCTCTTCCAGTGTGGCCAATTTT 538
| || |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
Sbjct 476 TCGACGTCGACAATCTCTTCCTCAAAAACACGGACGAGCTCTTCCAGTGTGGCCAATTCT 535
Query 539 GTGCTGTCTTCATCAACCCTTGCATCTTCCACACTGGTCTCTTTGTGTTGCAGCCATCAA 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTGCTGTCTTCATTAACCCTTGCATCTTCCACACTGGTCTCTTTGTGTTGCAGCCATCAA 595
Query 599 TGGAGGTCTTTAGAGACATGCTTCATGAGCTTGAAGTAAAGAGAGATAACCCTGATGGAG 658
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 596 TGGAGGTCTTTAGAGACATGATTCATGAGCTTGAAGTAAAGAGAGATAACTCTGATGGAG 655
Query 659 CTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGATTTACTCAATCAGCCTCTCTTTCGTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGATTTACTCAATCAGCCTCTCTTTCGTC 715
Query 719 CTCCTCCCGATAACCG--C-ACCGCGCTTAAGGGACATTTTAGGCTTCCTTTGGGATATC 775
||||| ||||||||| | ||||| |||| ||||||||||||||||||||||||||||
Sbjct 716 CTCCTTCCGATAACCTTACCACCGCACTTACTGGACATTTTAGGCTTCCTTTGGGATATC 775
Query 776 AAATGGACGCATCTTATTACT 796
|||||||||||||||||||||
Sbjct 776 AAATGGACGCATCTTATTACT 796
Score = 833 bits (451), Expect = 0.0
Identities = 512/542 (94%), Gaps = 2/542 (0%)
Strand=Plus/Plus
Query 945 TTATT-CAGCAGAGATGCCTTGGGTCCTAACCCAAGCAGTGTTCTACCTAGGAATTATAC 1003
||||| || |||||||||||||||| ||| ||||||||||||||| ||||| || ||||
Sbjct 801 TTATTCCA-CAGAGATGCCTTGGGTTATAATCCAAGCAGTGTTCTATCTAGGGATCATAC 859
Query 1004 TAGTCACACGTCTAGCGCGTCCCAACATGACCAAGCTATGTTACCGACGTTCTGATAAGA 1063
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 860 TAGTCACACGCCTAGCGCGTCCCAACATGACCAAGCTATGTTATCGACGTTCTGATAAGA 919
Query 1064 ATCTAAGCATGATCCAGACAGCTTTCAAGTTTGTTGCACTCCTCTTTATCCTCTCAGCCT 1123
|||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 920 ATCTAAGCATGATCCAGACAACTTTCAAGGTTGTTGCACTCCTCTTGATCCTCTCAGCCT 979
Query 1124 ACATTATACCATTCTTCATCATCCCACAGACGATCCACCCGCTCATTGGTTGGTCTCTCT 1183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 980 ACATTATACCATTCTTCATCATCCCACAGACGATCCACCCGCTCATCGGTTGGTCTCTCT 1039
Query 1184 ACTTAACCGGCTCCTTTGCTCTCTCTACCATACCCATCAACGCCTTCTTGCTTCCCATTC 1243
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct 1040 ACTTAACCGGCTCCTTTGTTCTCTCTACCATACCCATCAATGCCTTCTTGCTTCCAATGC 1099
Query 1244 TCCCTGTCATAACACCGTGGCTTGGCATTTTCGGGACACTCCTCGTGATGGCTTTTCCTT 1303
|||| ||||||||||||| | ||||||||||||| || ||||| ||||||||||||||||
Sbjct 1100 TCCCCGTCATAACACCGTTGATTGGCATTTTCGGAACGCTCCTAGTGATGGCTTTTCCTT 1159
Query 1304 CTTATCCTGATGGCGTTGTTAGAGCATTGTCGGTTTTCGGGTATGCATTTTGTTGTGCAC 1363
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1160 CTTATCCTGATGGCGTTGTCAGAGCATTGTCCGTTTTCGGGTATGCATTTTGTTGTGCAC 1219
Query 1364 CGTTTCTATGGGTCTCCTTTGTGAAGATCACATCGCATCTTCAGATTATGATTGACAAAG 1423
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1220 CGTTTCTATGGGTCTCCTTTGTGAAGATCACATCACATCTTCAGGTTATGATTGACAAAG 1279
Query 1424 AGGTTTTGTTTCCGCGGTTGGGTGAATCCGGAGTCACTTCTGGTCTCAGCAAATTGTACT 1483
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1280 AGGTTTTGTTTCCGCGGTTGGGTGAATCAGGAGTCACTTCTTGTCTCAGCAAATTGTACT 1339
Query 1484 GA 1485
||
Sbjct 1340 GA 1341
> Ahg482539 jgi|Araly1|482539|fgenesh2_kg.4__1599__AT2G35710.1
Length=1787
Score = 1053 bits (570), Expect = 0.0
Identities = 1221/1525 (80%), Gaps = 85/1525 (6%)
Strand=Plus/Plus
Query 1 ATGGATTTACAAAGA-ACTTTGATGTTCTCT-TGTTGGGTTCTGTCTCTTT-TGATCATC 57
|||||||| | ||| ||||| |||||| | | || |||||| ||| ||| |||| |||
Sbjct 175 ATGGATTTGCTGAGAGGCTTTG-TGTTCT-TGTCTTTGGTTCTATCT-TTTATGATAATC 231
Query 58 AAAACGACAGCGTATAACGAGA-A-ACAGCTG-T--TCCAGCCGCTTGAAAC-G-GA-A- 108
||||||| |||||| ||||| | ||||||| | | || |||| ||||| | || |
Sbjct 232 GAAACGACGGCGTAT--CGAGAGAGACAGCTGCTGCTGCAACCGCAAGAAACGGCGATAG 289
Query 109 A-A-CGCAAACGCGATGACCG-CGGTT-ATGGAGCGAGGATTAAAGACGCAGCGGCGGCC 164
| | |||||||||| || | ||||| | || || || ||||||| | |||||||||
Sbjct 290 ATACCGCAAACGCGGTG-GTGACGGTTCA-AGATCGGGGTTTAAAGA--C-GCGGCGGCC 344
Query 165 GGAGCACAAGAACGCTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTT 224
|||||| |||||||| || || ||||||||||||||||| || |||||||||||||||||
Sbjct 345 GGAGCATAAGAACGCCTACGCAACGATGATGTACATGGGGACGCCAAGAGACTACGAGTT 404
Query 225 CTACGTTGCGACACGTGTCTTGATCAGATCGCTTAAG-AGTCTCCACGTGGACGCTGATA 283
||||||||| || ||||| |||||||||||| || || |||||||||||||| ||||||
Sbjct 405 CTACGTTGCTACTCGTGTTTTGATCAGATCG-TTGAGAAGTCTCCACGTGGAAGCTGATC 463
Query 284 TCGTCGTTATAGCCTCCCTCGACGTTCCTAT-CAACTGGATTC--ACGCTCTGGAAGAAG 340
| ||||| || || || |||||||||||| | | | ||| ||| || || ||||||| |
Sbjct 464 TTGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGA-TGGGTTCAAAC-CT-TGGAAGAGG 520
Query 341 AAGATGGAGCTAAAGTAGTGAGAGTAGAGAATCTTGAGAATCCATACAAGAAACAAACCA 400
|||||||||| ||||| |||||||| || ||| | || |||||||||| || ||| ||||
Sbjct 521 AAGATGGAGCCAAAGTGGTGAGAGTTGAAAATGTGGATAATCCATACAGGAGACAGACCA 580
Query 401 ACTTCGACAACAGATTCAAGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATT 460
||||| ||| ||||||||||||| || |||||||||||||||||| || | ||||| |
Sbjct 581 ACTTCAACAGTAGATTCAAGCTTACACTGAACAAGCTCTACGCTTGGGCTTTGTCTGACT 640
Query 461 ATGACCGTGTTGTAATGCTTGATGTCGACAATCTCTTTCTCAAGAACACCGACGAGCTCT 520
| |||||||| || ||||| |||| ||| || ||||| || ||||| ||||||||||| |
Sbjct 641 ACGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTCCTTAAGAAAACCGACGAGCTGT 700
Query 521 TCCAGTGTGGCCAATTTTGTGCTGTCTTCATCAACCCTTGCATCTTCCACACTGGTCTCT 580
||||||| || | || ||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 701 TCCAGTGCGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGCATCTTCCACACTGGCCTCT 760
Query 581 TTGTGTTGCAGCCATCAATGGAGGTCTT-TAGAGACATGCTTCATGAGCTTGAAG-T-AA 637
| ||||||||||| ||| ||||||| || || |||||||| |||||||| ||| | |
Sbjct 761 TCGTGTTGCAGCCTTCAGTGGAGGTGTTCAAG-GACATGCTCCATGAGCTACAAGTTGGA 819
Query 638 AGAGAGATAACCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGAT-TTA 696
||| | | || |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 820 AGA-A-AGAATCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGTTACTTCTCTGATCTT- 876
Query 697 CTCA-ATCAGCCTCTCTTTCGTCCTCCTCCCGATAACCGCACC-GCGCTTAAG-GGACAT 753
|| | | || ||||||||||||||||| | ||| | | | | |||| | || ||
Sbjct 877 CT-AGACCAACCTCTCTTTCGTCCTCCGA--G-TAATGG-ATCTGTGCTTG-GTGGCCAC 930
Query 754 TTTAGGCTTCCTTTGGGATATCAAATGGACGCATCTTATTACTACCTTAAGCTCAGATGG 813
|| || ||||| ||||| || ||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 931 TTGAGACTTCCCTTGGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTAAGATGG 990
Query 814 AACGTACCATGTGGACCAAACAGTGTGATAACGTTCCCAGGAGCAGTATGGTTAAAGCCA 873
||| |||| |||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 991 AACATACCCTGTGGACCAAACAGTGTGATTACATTCCCAGGAGCTGTTTGGTTAAAGCCA 1050
Query 874 TGGTATTGGTGGTCATGGCCTGTTCTTCCTTTAGGCCTTTCATGGCACCACCAACGCCGC 933
||||| ||||||||||||||||||||||| |||| | ||||||||| | || ||||||
Sbjct 1051 TGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTATCTCATGGCACGAGCAGCGCCGC 1110
Query 934 TAC-ACGATTAGT-TATTCAGCAGAGATGCCTTGGGTCCTAACCCAAGCAGTGTTCTACC 991
|| || || || || |||||||| ||||||| |||| ||| ||||||||||||||||
Sbjct 1111 -ACCACTAT-AGGGTACTCAGCAGAAATGCCTTTGGTCATAATTCAAGCAGTGTTCTACC 1168
Query 992 TAGGAATTATACTAGTCACACGTCTAGCGCGTCCC-AACATGACCAAGCTATGTTACCGA 1050
| ||||| ||||| |||||||| ||||| || ||| ||||| |||||||||||||| ||
Sbjct 1169 TTGGAATCATACTGGTCACACGACTAGCTCG-CCCTAACATAACCAAGCTATGTTATCGC 1227
Query 1051 CGTTCTGATAAG-AATCT-AAGCAT-GATCCA-GACAGCTTTCAAGTTTGTTGCACTCCT 1106
|| ||||| | || || || || |||||| | ||| ||| |||| || || || ||
Sbjct 1228 CGCTCTGACC-GCAA-CTTAA-CAACGATCCAAG-CAGGTTTTAAGTCGGTCGCGCTTCT 1283
Query 1107 CTTTATCCTCT-CAGCCTACAT-TATACCATTCTTCATCATCCCACAGACGATCCACCCG 1164
|||| | | | |||||||||| | | |||||||||| |||||| || || ||||||||
Sbjct 1284 CTTTGTAGT-TGCAGCCTACATCT-TCCCATTCTTCACCATCCCTCACACCATCCACCCA 1341
Query 1165 CTCATTGGTTGGTCTCTCTACTTAACCGGCTCCTTT-GCTCTCTC-TACCATACCCATCA 1222
||||| || ||||| |||||||| | |||| |||| |||||||| | |||| | ||||
Sbjct 1342 CTCATCGGCTGGTCGCTCTACTTGAT-GGCTTCTTTTGCTCTCTCCT-CCATTTCAATCA 1399
Query 1223 ACGC-CTTCTTGCTTCCCATT-CTCCCTGT-CATAACACCGTGGCTTGGCATTTTCGGGA 1279
|| | || || || |||| |||||||| | | || || ||||| |||||| ||||||
Sbjct 1400 ACACTCTCCTC-CT-CCCAACACTCCCTGTTC-TCACTCCATGGCTCGGCATTCTCGGGA 1456
Query 1280 CACTCCTCGTGATGGCTTTTCCTTCTTATCCTGATGGCGTTGTTAGAGCATTGTCGGTTT 1339
| || ||||| ||||| || |||| || |||||||| || || ||||| ||||||||||
Sbjct 1457 CGCTTCTCGTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCGGTTT 1516
Query 1340 TCGGGTATGCATTTTGTTGTGCACCGTTTCTATGGGTCTCCTTT-GTGAAGATCACATCG 1398
||| || || |||||||| ||||| ||| | ||||| || || | ||||||||||||
Sbjct 1517 TCGCATACGCGTTTTGTTGCGCACCTTTTGTGTGGGTTTCATTCCGC-AAGATCACATCG 1575
Query 1399 CATCTTCAGATTATGATTGACAAAGAGGTTTTGTTTCCGCGGTTGGGTGAATCCGGAGTC 1458
|| || ||| || ||||||| |||||||| ||||||||||| ||||| || || || | |
Sbjct 1576 CACCTCCAGGTTTTGATTGAGAAAGAGGTGTTGTTTCCGCGATTGGGAGATTCAGG-GAC 1634
Query 1459 -ACTTCTGGTCT-CAGCAAATTGTA 1481
||||| || || ||||||||||||
Sbjct 1635 CACTTCAGG-CTTCAGCAAATTGTA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55573667455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5