BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16610.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493215 jgi|Araly1|493215|fgenesh2_kg.7__2648__AT4G16610.1 1243 0.0
> Ahg493215 jgi|Araly1|493215|fgenesh2_kg.7__2648__AT4G16610.1
Length=944
Score = 1243 bits (673), Expect = 0.0
Identities = 878/970 (91%), Gaps = 42/970 (4%)
Strand=Plus/Plus
Query 1 ATCAAATTGAGACATCGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGtcttcttagg 60
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATCACATTGAGACATAGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGTCTTCTAAGG 60
Query 61 tttctttttcttgctttttgttctgttcttgtttcttttgGCAAAATGCAGAACAAACAC 120
||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTT-ATTTTCTTGCTTTTTGTTGTGTTCTTG-TTCTTTTGGCAAAATGCAGAACAAACAC 118
Query 121 AAATGCAAGCTCTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAATGCAAGCTTTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 178
Query 181 TCTCACTTGGTCTCATCTCAGTCTTC-AGCTCGGAAGAAACTAGGTGACTCGGTCTATTC 239
|||||||||||||| |||||||| || | ||||||||||||| |||||||||||||||||
Sbjct 179 TCTCACTTGGTCTCTTCTCAGTCGTCGA-CTCGGAAGAAACTCGGTGACTCGGTCTATTC 237
Query 240 TTCTTCTTCCTCTTCCTCCGATGGTAAAGCGCTCGCCTACGGGTTACGAGAGAACCCGAG 299
||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 238 TTCTTCTTCTTCTTCCTCCGATGGTAAAGCTCTCGTCTACGGGTTGCGAGAGAACCCGAG 297
Query 300 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCATCCACAATTTACAACAGTGAGAC 359
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 298 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCCTCCACCGTTTACAACAGTGAAAC 357
Query 360 AGAGACCGAACCTGAATCCGGAGACCCGGTTAAGAAACGGGTCAGAGGAGATGTTTCaaa 419
||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 358 AGAGACCGAACCTGAGTCCGGAGACCCGGTTAAGAAACGGGTTAGAGCATATGTTTCAAA 417
Query 420 gaagaagaagaagaaggcaaagagtaagagagtgtttgagaactcgaagaagcaaaagaC 479
||||||||||||| | ||||||| ||||| | | | |||| || || |||
Sbjct 418 GAAGAAGAAGAAG--G-CAAAGAGCAAGAG--T-----A-A----GAAGCAG-AA--GAC 459
Query 480 AATTCACGAGTCACCAGAACCAGCGAGTTCTGTCTCTGATGGTTCTCCTGAACAAGATTT 539
| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 460 GAGTCACGAGTCACCAGAACCGGCGAGTTCTGTCTCTGATGGTTCTCCGGAACAAGATTT 519
Query 540 AGCTATGTGCTTGATGATGCTGTCAAGAGATTCAAGGGAGCTCGAGATTAAACTGAAAAA 599
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 520 AGCTATGTGTTTGATGATGCTGTCGAGAGATTCAAGGGAGCTTGAGATTAAACTGAAAAA 579
Query 600 ACCGG------AGGAAGA-GAGG--AAGCCGGAAAAAAGACATTTCCCTGAGCTCCGTCG 650
||||| |||| || ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 580 ACCGGTTTCTGAGGAGGAAGAGACCAAGCCGGAGAAAAGACATTTCCCGGAGCTCCGCCG 639
Query 651 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGAAGCTGAAGCTGTCACCGTCGTTTC 710
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 640 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGACGCCGAAGCTGTCACCGTCGTTTC 699
Query 711 AGCCATATAAAGGTTTCAGAG-TCTAGAGTAACATCaaaaaaaaTCAAAGAATCTTGATG 769
||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||
Sbjct 700 AGCCATATAAAGGTTTCAGAGAT-TAGAGTTCCATCAAAAA---TCAAAGAATCTTGATG 755
Query 770 ATTTGGTTTGTCTTCAAGATAATTATTCTTTATTAGAGAAAACCGTTTATTGGTTTTGGA 829
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 756 ATTTGGTTTGTCTTCAAGATTATTATTCTTTATTAGAAAAAACCGTTTATTGGTTTTGGA 815
Query 830 ATCTTTGGGATCATATTATCA--AAACAATGTACTTTTGATGTAAGACAAC-AACAACAA 886
||||||||||| ||||||| | |||||||||||||||||||||||||||| || || ||
Sbjct 816 ATCTTTGGGATGATATTATTATCAAACAATGTACTTTTGATGTAAGACAACCAAAAAAAA 875
Query 887 AAACCAAAGAAACCA-AAGGAA-CTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 944
||| |||||| | | || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 876 AAAA-AAAGAAGCAAGAAAGAAACTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 934
Query 945 TCTTGATTAT 954
|||||| |||
Sbjct 935 TCTTGAATAT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5