BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16620.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329848 jgi|Araly1|329848|fgenesh1_pm.C_scaffold_7002075 1685 0.0
> Ahg329848 jgi|Araly1|329848|fgenesh1_pm.C_scaffold_7002075
Length=1080
Score = 1685 bits (912), Expect = 0.0
Identities = 1026/1082 (95%), Gaps = 4/1082 (0%)
Strand=Plus/Plus
Query 190 ATGATGAAGAGAGAGACGTTAATAGAAGCAGGAATAATCGGAGGATTGGCCGGAGCTCAG 249
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGATGAAGAGAGAGACGTTAAAAGAAGTAGGAATAATCGGAGGATTAGCCGGAGCTCAG 60
Query 250 GTGATTTACGCCGGAAACTCGGAGCTACTGAGTCAGTTGCTGTCTCTCGGAATTGACCCA 309
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 61 GTGATCTACGCCGGAAACTCGGAGCTACTGAGTCAGTTGTTGTCTCTTGGAATTGACCCT 120
Query 310 CTTCTTATCGTTATCTTATGCACCTTTGCATCAGTTCTTCTCATCAC-CCCTCTCGCTTT 368
|||||||| || ||| | ||||||||||||||| ||||||||||||| |||| | |||||
Sbjct 121 CTTCTTATTGTAATCCTCTGCACCTTTGCATCATTTCTTCTCATCACTCCCT-TTGCTTT 179
Query 369 TCTCCTTGAAAGGAAGCTTTGGCCTAGAAGTCTAAGTTTCAAGTTGAAGATAAAACTAGT 428
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 180 TCTCCTTGAAAGGAAGCTTTGGCCTACAAGTCTAAGTTTCAAGTTGAAGATAAAACTGGT 239
Query 429 TTTGGTTGCTCTTGCTGGAGTGACTCTGTTCCAGGGGTTATTCTTGGAAGGAATGAAACA 488
|||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||
Sbjct 240 TTTGGTTGCTCTTGCTGGAGTGTCTCTGTTCCAGTGGTTATACTTAGAAGGAATGAAACA 299
Query 489 CACCTCTGCTTCAATGGCTACAGCTATGCCTAATCTCTGCCCTGCTTTCATTTTTGTCAT 548
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TACCTCTGCATCAATGGCTACAGCTATGCCTAATCTCTGTCCTGCTTTCATTTTTGTCAT 359
Query 549 TGCTTGGGCTGCTGGGATGGAGAAAGTGAAGCTAAGTTGTATGTATAGTAGAGTTAAGAT 608
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGCGTAGGCTGCTGGGATGGAGAAAGTGAAGCTAAGTTGTATGTACAGTAGAGTTAAGAT 419
Query 609 GGGAGGGACAGTGTTGTGTGTGATGGGAGC-TCTCATTATGAGCTTAATGCACAGTACTA 667
||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 420 GGGTGGGACAGTGTTATGTGTGATGGGAGCAT-TCATTATGAGCTTAATGCATAGTACTA 478
Query 668 CCGCTACTTTAAGCTCGGTTAAGACTATACCTATTGTCCCTGACGAAGTCGTTGTGGACA 727
|||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 479 CCGCCACTTCGAGCTCGGTCAAGACTATGCCTATTGTCCCTGACGAAGTCGTTGTGGACA 538
Query 728 AGGACAAGATCTTAGGTTGCCTCTATCTCCTCCTTGCCATTTGCGGCTTGTCCTCTAGTA 787
||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||
Sbjct 539 AGGACAAGATCTTAGGTTGTCTCTGTCTCCTCCTCGCCATCTGCGGCTTGTCCTCTAGTA 598
Query 788 TTGTCCTTCAGGCATCCATACTAGCCGAGTTTCCGGCGCCTATATCAATGTTCTCGATGG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGTCCTTCAGGCATCCATACTAGCCGAGTTTCCGGCGCCTATATCAATGTTCTCGATGG 658
Query 848 TATCTTTGATGGGTGGGATCACCACAGTAGCTTTGCAGTATGCTCTTAAGGGAAGTATGG 907
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 659 TATCTTTGATGGGTGGGATCACCACGGTAGCTTTGCAGTATGCTCTTAAGGGTAGTATGG 718
Query 908 AAATGGGAAGTGCATCAGTAATCGGTCTCGGCCACCTTGTGGGATACGCAATACTGGGAG 967
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 AGATGGGTAGTGCATCAGTAATCGGTCTCGGTCACCTTGTGGGATACGCAATACTGGGAG 778
Query 968 GGTTGGTGAGTGGAGGAGGGTTAAGCTTCAATGCATGGGTGATTAAGAGGAAAGGACCAG 1027
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 779 GGTTGGTGAGTGGAGGAGGGTTAAGTTTCAACGCATGGGTGATTAAGAGGAAAGGACCCG 838
Query 1028 TGATTGTGTCTCTCTTTAGTCCAATTGCAACTGTGGTATGTGTTGTTGTCTCTGCTTTTA 1087
|||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 839 TGATTGTGTCTCTCTTTAGTCCAATTGCTACTGTGGTTTGTGTTCTTGTCTCTGCTTTTA 898
Query 1088 CCATGGAAGAGAGTTTCAACCTAGGAAGCTTTGCGGGAATGGCGTTGATGTTCGGAGGAC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCATGGAAGAGAGTTTCAACCTAGGAAGCTTTGCGGGAATGGCGTTGATGTTCGGAGGAC 958
Query 1148 TCTACTTCGTTCTGTGGGCTAAAGGAAAAGAGGATTGTGAAGAAATAGATGAAATGAAAC 1207
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 959 TCTACTTCGTTCTGTGGGCTAAAGGGAAAGAGGATTGTGAAGAAATAGATGAAACAAAAC 1018
Query 1208 AAGATGATGAAGAAAGTTTGCTTAGAACAGAGTTTGATCTTCAGAAGCCTCTCTTGCTTT 1267
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 AAGATGATGAAGAAAGTTTGCTTAGAACAGAGTTTGATCTTGAGAAGCCTCTCTTGCTTT 1078
Query 1268 AG 1269
||
Sbjct 1079 AG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5