BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16630.1
Length=2861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493213 jgi|Araly1|493213|fgenesh2_kg.7__2646__AT4G16630.1 4071 0.0
> Ahg493213 jgi|Araly1|493213|fgenesh2_kg.7__2646__AT4G16630.1
Length=2578
Score = 4071 bits (2204), Expect = 0.0
Identities = 2468/2592 (95%), Gaps = 31/2592 (1%)
Strand=Plus/Plus
Query 274 TTTCTGAAACCTCTTAAACCCTAGCAATGCCGTCGAGTTTCTTCTTTGAGGATGCTAGTG 333
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTTCTGAAACCTCTTAAACCCTAGCAATGTCGTCGAGTTTCTTCTTTGAGGATGCTAGTG 60
Query 334 ACGACGAGCTCGAATTAATACGCAATCAAGAGGACAGTAGTGAGGAAGACGTAAAggaag 393
||||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 61 ACGACGAGCTCGAATTACTACGCAATCAAGAGGATAGTAGTGAGGAAGATGTAGAGGAAG 120
Query 394 gcgaagcagaagagcatgaagctggagaagacgaagatggagaagaggaa-tatgaagaa 452
|||||||||||||||| || ||||||||||||||||||||||||| || | |||||
Sbjct 121 ACGAAGCAGAAGAGCATAAATCTGGAGAAGACGAAGATGGAGAAGA-TAACGAAGAAGAT 179
Query 453 gaagatgacgacgaagaagaagaagatgagaagCGGAAACGAGATGCTGATGCTCAATCT 512
|| || || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 GACGAAGAAGAAGAAGAAGAAGAAGATGAGAAGCGGAAACGTGATGCTGATGCTCAATCT 239
Query 513 CCTTGGGATTTTGCATCTTACTCAAGCTCCGTTGGTGAAGAACACGCCCGCCGTCACACA 572
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 240 CCTTGGGATTTTGCATCTTATTCTAGCTCCGTTGGTGAAGAACACGCCCGCCGTCACACA 299
Query 573 ACGTCTATTGATGAAAAGATCTCTAAAGCTATTCAGCATCGTCCAGTTCCCATTTCAATA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGTCTATTGATGAAAAGATCTCTAAAGCTATTCAGCATCGTCCAGTTCCCATTTCAATA 359
Query 633 -A--ATg-a-a-gaagaagaag-ag--gaagaagaagaagaagaTGCCTCCGATGCTGAA 683
| | | | | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 360 GAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCTCCGATGCTGAA 419
Query 684 ACTGACAAACAAGAGGAGTATCTTTCGGAAGACGATGAGGCAGCTGAGTACAAACCAGAA 743
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CCTGACAAACAAGAGGAGTATCTTTCGGAAGACGATGAAGCAGCTGAGTACAAACCAGAA 479
Query 744 GATGCTACTCCCAAGCCGTTCTTCTCTACAGTGGATGGAGTTTCATTTCATGCTGATACT 803
||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 480 GATTTTACTCCGAAGCCGTTTTTCTCTACAGTTGATGGAGTTTCATTTCATGCTGATTCT 539
Query 804 TTCATGGAGCTTAATCTCTCTCGTCCATTGCTTCGAGCTTGTGAAACTCTCGGATACAAG 863
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 TTCATGGAGCTTAATCTCTCTCGTCCATTGCTTCGAGCTTGTGAAACCCTCGGATACAAG 599
Query 864 AAACCTACTCCGATTCAGGCAGCTTGTATACCTTTAGCACTTACAGGGCGTGATCTTTGT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAACCTACTCCGATTCAGGCAGCTTGTATACCTTTAGCACTTACAGGGCGTGATCTTTGT 659
Query 924 GCCAGTGCCATCACTGGGTCAGGGAAGACTGCTGCATTCGCTTTACCTACTCTTGAGAGG 983
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCCAGTGCCATCACTGGATCAGGGAAGACTGCTGCATTCGCTTTACCTACTCTTGAGAGG 719
Query 984 TTGCTGTTCCGTCCCAAGCGGGTCTTTGCTACTAGAGTTCTTATTCTCACTCCGACTAGG 1043
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 TTGCTGTTCCGTCCCAAGCGGGTCTTTGCTACTAGAGTTCTTATTCTCACTCCGACCAGG 779
Query 1044 GAGTTGGCCGTCCAGATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAG 1103
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 780 GAGTTGGCTGTCCAGATTCACAGTATGATTCAGAAGCTTGCACAATTTACTGATATCAAG 839
Query 1104 TGTGGATTGATTGTAGGAGGGCTTTCTGTAAGGGAGCAAGAGGTGGTTCTGAGGTCTATG 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTGGATTGATTGTAGGAGGGCTTTCTGTAAGGGAGCAAGAGGTGGTTCTGAGGTCTATG 899
Query 1164 CCAGATATTGTTGTGGCGACTCCTGGACGTATGATAGATCATTTGCGTAATTCTATGTCT 1223
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 CCAGATATTGTTGTGGCGACTCCTGGGCGTATGATAGATCATTTGCGTAATTCTATGTCT 959
Query 1224 GTTGATTTGGATGATCTAGCGGTTTTAATCCTTGATGAGGCAGACCGCCTTCTACAGACT 1283
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GTTGATTTGGATGATCTAGCGGTTTTAATCCTCGATGAGGCAGACCGCCTTCTACAGACT 1019
Query 1284 GGGTTTGCCACTGAAATCACAGAGCTGGTTCGCTTATGTCCCAAGAGAAGGCAAACAATG 1343
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 GGGTTTGCCACTGAAATAACAGAGCTGGTTCGCTTATGTCCCAAGAGAAGGCAGACAATG 1079
Query 1344 CTCTTCTCAGCCACAATGACTGAAGAAGTTAAAGAGCTAGTCAAACTTTCCTTGAACAAA 1403
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 CTCTTCTCAGCCACAATGACTGAAGAAGTCAAAGAGCTAGTCAAACTTTCCTTGAACAAA 1139
Query 1404 CCGTTGCGGCTCTCAGCTGATCCATCAGCTAGAAGGCCACCAGGCTTGACTGAGGAGGTG 1463
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 CCGTTGCGCCTCTCAGCTGATCCATCAGCTAGAAGGCCACCAGGCTTGACTGAAGAGGTG 1199
Query 1464 GTAAGAATACGCAGGACTCGTGAGGCAAATCAGGAAGCTGTTCTTCTATCATTGTGCACA 1523
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1200 GTAAGAATACGCAGGACTCGTGAGGCTAATCAGGAAGCTGTTCTTCTATCGTTGTGCACA 1259
Query 1524 AGGACTTTTAAATCAAAAGTCATTATCTTTAGTGGAACAAAACAAGCTGCACATAGACTG 1583
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGAACTTTTAAATCAAAAGTCATTATCTTTAGTGGAACAAAACAAGCTGCACATAGACTC 1319
Query 1584 AAAATTTTATTCGGATTAGCTGGCCTCAAAGCAGCTGAGCTTCATGGAAACCTAACTCAA 1643
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAAATTCTATTCGGATTAGCTGGCCTCAAAGCAGCTGAGCTTCATGGAAACCTAACTCAA 1379
Query 1644 GCACAACGTCTTGATTCTCTGGAGCTTTTCAGAAAGCAGGAGGTCGATTTTCTCATTGCT 1703
|||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1380 GCACAACGTCTTGATTCTTTGGAACTTTTCAGAAAGCAAGAGGTTGATTTTCTCATTGCT 1439
Query 1704 ACCGATGTAGCCGCTCGAGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCT 1763
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACCGATGTAGCTGCTCGAGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCT 1499
Query 1764 TGTCCTCGGGAAATAGACAGTTATGTTCACAGAGTTGGTAGAACAGCTAGGGCTGGAAGG 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGTCCTCGGGAAATAGACAGTTATGTTCACAGAGTTGGTAGAACAGCTAGGGCTGGAAGG 1559
Query 1824 GAAGGTTATGCTGTAACGTTTGTGACTGATAGTGACCGATCCCTTTTGAAAGTCATTGCA 1883
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1560 GAAGGTTATGCTGTTACGTTTGTGACTGATAGTGACCGATCCCTTTTGAAAGTTATTGCA 1619
Query 1884 AAGAAGGTGGGTTCAAAGTTGAAGAGCCGAGTCATCCCAGAGCAGTCAATCGTCAAGTGG 1943
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1620 AAGAAGGTGGGTTCAAAGTTGAAGAGCCGAGTCATCCCAGAGCAGTCAATTGTCAAGTGG 1679
Query 1944 TCTCAGATAATCGATGAAATGGAAGATCAATATTCCGCTGTTATTTCAGCAGAGAGGGAT 2003
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1680 TCTCAGATAATTGATGAAATGGAAGATCAGTATTCCGCTGTTATTTCAGCAGAGAGGGAT 1739
Query 2004 GAGCGAGCTCTAAGGAAAGCTGAAATGGAATTTGCAAAGGCGGAGAACATGCTTGAGCAC 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GAGCGAGCTCTAAGGAAAGCTGAAATGGAATTTGCAAAGGCGGAGAACATGCTTGAGCAC 1799
Query 2064 AGAGATGAAATATATGCACGCCCAAAAAGGACTTGGTTCATGACAGAGAAGGAGAAGAAG 2123
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1800 AGAGATGAAATATATGCACGCCCAAAAAGAACTTGGTTCATGACAGAGAAAGAGAAGAAG 1859
Query 2124 CTCGTGGCACAGGCTGAAAAGGATTCTGCAGGGAACCCTGCTGGAGGCGAACTAGTTAGT 2183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1860 CTCGTGGCACAGGCTGAAAAGGATTCTGCAGGGAACCCTTCTGGAGGCGAACTAGTTAGT 1919
Query 2184 GCTGATAGAGCAGAGGACCTCAAGATGAAGGAGAAGAGAAAACGTGAACGCGAGAAGAAT 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GCTGATAGAGCAGAGGACCTCAAGATGAAGGAGAAGAGAAAACGTGAACGCGAGAAGAAT 1979
Query 2244 CTTCCTAGGAAAAAACGTagaaagctagaagctgccagagagatgctagaagataacgaa 2303
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1980 CTGCCTAGGAAAAAACGTAGAAAGCTAGAAGCTGCCAGAGAGATGCTAGAAGATGGCGAA 2039
Query 2304 ggagaagaagaggaagaagacgaagaaggagacgaaaagagaggaagatcaagagggaaa 2363
|||||||||| |||||||| | | | |||||||||| ||||||||||||||||||||
Sbjct 2040 GGAGAAGAAGCCGAAGAAGA--A-G--G-AGACGAAAAGCGAGGAAGATCAAGAGGGAAA 2093
Query 2364 gacaagaaaaaacaggagacagataagaaggGATTGACACTAAAGGATCTTGGTTACATG 2423
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2094 GACAAGAAAAAACAAGAGACAGAGAAGAAGGGATTGACACTAAAGGATCTTGGTTACATG 2153
Query 2424 AGAGCAAAAGCGGTGAAAGCAAAACAGAGAGCAATTGATTCCGGTAAGATGGAGAGACCA 2483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2154 AGAGCAAAAGCGGTGAAAGCAAAACAGAGAGCAATTGATTCTGGTAAGATGGAGAGACCA 2213
Query 2484 AAGCCGGACAAGAAAC-AAAGCCGGAGTAAACCAAGAAACCAGCCTCGTGGTGAAGAGAT 2542
| |||| ||||||||| ||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 2214 ACGCCGAACAAGAAACCAAA-CCGGAGTAAACCAAGAAACCAGCCTCGAGATGAAGAGAT 2272
Query 2543 GAAAGATCTGTTCAAGAGTGATATGGGCGAGAAGAAACAGGGCAGAGGCGGTGCCGCGGC 2602
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2273 GAAAGATCTGTTCAAGAGTGATATGAGCGAGAAGAAACAGGGCAGAGGCGGTGCCGCGGC 2332
Query 2603 TGCAGCAAAACCTCGGACGAAGTCGAAGAACTCATTCAAGAGCAAAGCCAGATATAAGCG 2662
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2333 TGCAGCAAAACCTAGGACGAAGTCGAAGAACTCGTTCAAGAGCAAAGCCCGATATAAGCG 2392
Query 2663 TAGGTAAAAGGAAAAAGCATTTTTGAGAAGATATCGAAGGACAATC---CC--ACGAGAA 2717
||||||||| |||||||| |||||||||||||||||||| |||| | || | |||||
Sbjct 2393 TAGGTAAAAAGAAAAAGCTTTTTTGAGAAGATATCGAAGAACAAACAAACCCTA-GAGAA 2451
Query 2718 GAAGGACATTTCATT-GAGAAGGGTTTAAACAATTTAAATTATTGTTGTAATATCATAAT 2776
|| |||||||| || | |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2452 AAAAGACATTTC-TTAGCGAAGGGTTTAAACAATTTAA-TTATTGTTGTAATATCAGAAT 2509
Query 2777 TTAGAACAAAACTGGTTAAGATGTTCGAAATTTTGTTTTCTTTGTCCTATGGTTTTTATA 2836
||||||| |||| ||| |||||||||| |||||||| || | ||||||||||||| |
Sbjct 2510 TTAGAACGAAACAGGTGAAGATGTTCGCAATTTTGTATT-TAC--CCTATGGTTTTTACA 2566
Query 2837 ATCTTTCATAAA 2848
|||||| |||||
Sbjct 2567 ATCTTTTATAAA 2578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107985844575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5