BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16640.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493212 jgi|Araly1|493212|fgenesh2_kg.7__2645__AT4G16640.1 1997 0.0
Ahg932920 jgi|Araly1|932920|scaffold_400908.1 80.5 3e-14
Ahg932919 jgi|Araly1|932919|scaffold_400907.1 80.5 3e-14
> Ahg493212 jgi|Araly1|493212|fgenesh2_kg.7__2645__AT4G16640.1
Length=1371
Score = 1997 bits (1081), Expect = 0.0
Identities = 1287/1383 (93%), Gaps = 28/1383 (2%)
Strand=Plus/Plus
Query 71 GTAAAAGTTCAGTTCACCCGACGAACCAACTTCCAAGTAGTAGTCCAAATC----ATAGA 126
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GTAAAAATTCAGTTCACCCGACGAACCAACTTCCAAGTAGTAGTCCAAATCATAGATAGA 60
Query 127 TTCTTTTGAGGTTTTAAATGTACCCTCACGTCAGAATCTACTTAAGTCTTTCCCCTTTTT 186
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 TTCTTTTGAGGTTTTAAATGTACCCTCACGTTAGAATCTACTTAACTCTTTCCCCTTTTT 120
Query 187 CTGTCTCTCTTTCACCTTTTCTTCTCCATCGATCTTACCTCCACGGAACTTCTTATTTAA 246
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTGTCTCTCTTTCACCTTTTCTTCTCCATTGATCTTACCTCCACGGAACTTCTTATTTAA 180
Query 247 ATCaaaaaaaTTCAGAATCTTTTAATCTCACG---CA-G--G-CAAATGTCTCGTAATTT 299
|||||||| || ||||||||||||||||||| || | | |||||||||||||| ||
Sbjct 181 ATCAAAAAGTTTTAGAATCTTTTAATCTCACGACTCACGCAGACAAATGTCTCGTAAATT 240
Query 300 AATCTATAGAAGAAACAGAGCTCTCTGTTTTGTTTTAATCTTGTTCTGC-TTCCCTTACC 358
||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 241 AATCTAT---AGAAACAGAGCTCTCTGTTTTGTATTAATCTTGTTCT-CTTTCCCTTACC 296
Query 359 GGTTTGGCGCTAGAAACAC-GCCGGAGGCGGAACAATCCACAGCAAAAGCAACTCAAATA 417
|||||| |||||||||| | || |||||||||| ||||||||||||||||||||||||||
Sbjct 297 GGTTTGCCGCTAGAAAC-CTGCGGGAGGCGGAAGAATCCACAGCAAAAGCAACTCAAATA 355
Query 418 ATACACGTCAGCAATTCCACGTGGCATGATTTCTCTCGTCTTGTAGATGTCCAAATAGGT 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 356 ATCCACGTCAGCAATTCCACGTGGCATGATTTCTCTCGTCTTGTAGATGTCCAGATAGGT 415
Query 478 AGCCACGTCAGCGGCGTATCAGAGCTCAAAAGATACCTCCACCGATTCGGTTACGTCAAT 537
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGCTGCGTAAACGGCGTATCAGAGCTCAAAAGATACCTCCACCGATTCGGTTACGTCAAT 475
Query 538 GATGGCTCCGAAATATTT-TCCGACGTGTTCGATGGTCCTCTGGAATCGGCAATCTCTCT 596
|||||||| |||| ||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 476 GATGGCTCGGAAA-GTTTCTCCGACGTGTTCGATGGTCCGCTCGAATCGGCAATCTCTCT 534
Query 597 GTATCAAGAAAATCTCGGTTTACCAATAACCGGAAGACTCGACACGAGTACAGTTACTCT 656
||| |||||||||||||||||||| |||||||||||||||||||||||||| || | |||
Sbjct 535 GTACCAAGAAAATCTCGGTTTACCGATAACCGGAAGACTCGACACGAGTACCGTCAGTCT 594
Query 657 CATGTCGTTACCGCGATGTGGCGTTAGCGATACGCACATGACCATCAACAACGATTTCCT 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 595 CATGTCGTTACCGCGATGTGGCGTTAGCGATACGCACATGATCATCAACAACGGTGTCAT 654
Query 717 CCACACAACGGCGCATTATACGTATTTCAACGGTAAACCGAAATGGAACCGTGATACGCT 776
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 655 CCACACAACGGCGCATTATACGTATTTTAACGGTAAACCGAAATGGAACCGTGACACGCT 714
Query 777 AACCTACGCTATCTCCAAAACTCACAAACTCGATTACTTGACGTCAGAAGACGTCAAAAC 836
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 715 AACCTACGCTATCTCGAAAACACACAAACTCGATTACTTGACGTCAGAAGACGTCAAAAC 774
Query 837 CGTTTTCCGGCGAGCTTTTTCACAGTGGTCAAGCGTGATTCCGGTGAGTTTCGAGGAAGT 896
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 CGTTTTCCGGCGAGCTTTTTCGCAGTGGTCAAGCGTGATTCCGGTGAGTTTCGAGGAAGT 834
Query 897 CGACGATTTCACGACGGCTGATTTAAAGATCGGATTCTACGCTGGTGATCACGGTGACGG 956
|| |||||| || |||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 835 TGATGATTTCTCGGCGGCGGATTTAAAGATCGGGTTCTATGCCGGTGATCACGGTGACGG 894
Query 957 GCTTCCGTTTGACGGTGTACTTGGAACTTTAGCACACGCTTTTGCGCCGGAGAACGGGAG 1016
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 895 GCTTCCGTTTGACGGAGTTCTCGGGACTTTAGCACACGCTTTTGCGCCGGAGAACGGGAG 954
Query 1017 GCTTCACCTCGACGCGGCGGAGACGTGGATCGTCGACGATGACTTGAAAGGATCTTCAGA 1076
|||||||||||||||||||||||| ||| ||||||| |||||||| ||||||| ||| ||
Sbjct 955 GCTTCACCTCGACGCGGCGGAGACATGGGTCGTCGATGATGACTTTAAAGGATATTCCGA 1014
Query 1077 GGTGGCCGTTGACTTGGAGTCTGTGGCGACTCACGAGATCGGTCACTTGTTGGGATTAGG 1136
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1015 GGTGGCCGTTGACTTGGAGTCTGTGGCGACTCATGAGATTGGTCACTTGTTGGGATTAGG 1074
Query 1137 ACATAGCTCGCAGGAGTCGGCGGTTATGTATCCGAGTCTCCGACCGAGGACCAAGAAAGT 1196
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1075 ACATAGCTCGCAGGAGTCGGCGGTTATGTACCCGAGTCTCCGGCCAAGGACCAAGAAAGT 1134
Query 1197 TGACCTTACGGTTGATGACGTGGCAGGTGTACTTAAGCTATATGGTCCGAATCCTAAACT 1256
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1135 TGACCTTACCGTTGATGACGTCGCAGGTGTACTTAAGTTATATGGTCCGAATCCTAAACT 1194
Query 1257 ACGGTTGGATTCACTAACGCAGTCGGAAGATTCTATTAAAAACGGCACCGTATCAC-ATA 1315
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1195 ACGGTTGGATTCACTGACGCAGTCGGAAGATTCTATTAAAAACGGCACCGTATCACGA-A 1253
Query 1316 GATTCTTGTCGGGGAATTTTATCGGTTATGTTCTGTTGGTTGTTGGTTTGATTCTTTTCC 1375
|||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1254 GATTCTTGTCGGGGAATTTTATCGGTTATGTTCTGTTGGTTGTT--TT-GATTCTGTTCC 1310
Query 1376 TATAGG-TTTATAGGCATAAAAAATACTGTTTTTATTCATTTATTTTTAATTAAATGTAC 1434
|||||| ||||||| | ||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1311 TATAGGGTTTATAGA-ACAAAAA-TACTGTTTTTATTCCTTTATTTATAATTAAATGTAC 1368
Query 1435 ATA 1437
|||
Sbjct 1369 ATA 1371
> Ahg932920 jgi|Araly1|932920|scaffold_400908.1
Length=310
Score = 80.5 bits (43), Expect = 3e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 8 GTGATGATGTGTCAATCATATGGAGAGAGTTGGCCAACTTTCATATATATGA 59
|||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 305 GTGATGATATGTCACTCATATAGAGAGAGTTGGCCAACTTTCATATATATGA 254
> Ahg932919 jgi|Araly1|932919|scaffold_400907.1
Length=310
Score = 80.5 bits (43), Expect = 3e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 8 GTGATGATGTGTCAATCATATGGAGAGAGTTGGCCAACTTTCATATATATGA 59
|||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 305 GTGATGATATGTCACTCATATAGAGAGAGTTGGCCAACTTTCATATATATGA 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5