BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16650.1
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493211 jgi|Araly1|493211|fgenesh2_kg.7__2644__AT4G16650.1 3832 0.0
> Ahg493211 jgi|Araly1|493211|fgenesh2_kg.7__2644__AT4G16650.1
Length=2257
Score = 3832 bits (2075), Expect = 0.0
Identities = 2202/2263 (97%), Gaps = 9/2263 (0%)
Strand=Plus/Plus
Query 6 TCTTCACCATTTCGAAAAATCTCAAAACTTTACAGAGAGAAAGAGAGATCCTTTACATAT 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCACCATTTCGAAAAATCTCAAAACTTTACAGAGAGAAAGAGAGATCCTTTACATAT 60
Query 66 ACTTCACTGTCTTCTTGAAAACCCTAATCCTCCGATCTGTTTAACCTCCGATCAAGAGAG 125
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 ACTTCACTATCTTCCTAAAAACCCTAATCCTCCGATCTGTTTAACCTCCGATCAAGAAAG 120
Query 126 ATTTCTTCAGCTTGTGTGTATCAGATTCCTTTGGATTCCCCGATTCTTCGTCGTATCGAA 185
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTCTTCAG--TAT-TGTATCAGATTCCTTTGGATTCCCCGATTCTTCGTCGTATCGAA 177
Query 186 TCGGGGGATGGCATTTCCGTGAAATCAGTGATGAAATTGGAGGTGAGAAGAAGTTATTTC 245
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 TCGGGGGATGGCATTTCCGTGAAATCAGTGATGAAATTGGTGGTGAGAAGAAGTTATTTC 237
Query 246 TATCTATGGGCGTAGTAGCTGAGGTTTGGAGGTCGAGCGTGAGGCTATTAACGAACTCGC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TATCTATGGGCGTAGTAGCTGAGGTTTGGAGGTCGAGCGTGAGGCTATTAACGAACTCGC 297
Query 306 CTCAGCTTAACGGTGGCTCTCACAAGAGTGCGTTATGGAAGTGGCGATTTTTCTCTGCTC 365
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 298 CTCAGCCTAACGGTGGCTCTCACAAGAGTGCGTTATGGAAGTGGCGATCTTTCTCTGGTC 357
Query 366 AGCCCAAAAGAACCGTAATGTGGACATGGGTTTGTGGTTTCATGCTTTTCTCTTTAGGAG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCCCAAAAGAACCGTAATGTGGACATGGGTTTGTGGTTTCATGCTTTTCTCTTTAGGAG 417
Query 426 TCATCTCACTTTTCACTGGTCACGTTGTCTCGCACCTTGAGTGGTATTCTCAGCAATTAA 485
| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 TTATCTCTCTCTTCACCGGTCATGTTGTCTCGCACCTTGAGTGGTATTCTCAGCAATTAA 477
Query 486 GCAAACGGAGCTTACTGGATATGAGCCGTCGAGAACCAATTGATGTATGGAAGTCAAAAT 545
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCAAACGAAGCTTACTGGATATGAGCCGTCGAGAACCAATTGATGTATGGAAGTCAAAAT 537
Query 546 ATTCGAAGTTTTTCTATGGATGCAGTGAGAGAGGAAGGAACTTCCTTCCTGCTGTCCAGG 605
|||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 ATTCAAAGTTCTTCTATGGATGCAGTGAGAGAGGAAGGAACTTCCCTCCTGCTGTCCAGG 597
Query 606 AGCAGTCATCTAATGGATATTTGCTTATTGCAGCTAGTGGAGGCCTTAACCAACAAAGAA 665
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 AGCACTCGTCTAATGGATATTTGCTTATTGCTGCTAGTGGAGGCCTTAACCAACAAAGAA 657
Query 666 CAGGAATAACTGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCG 725
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGGAATAACAGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCG 717
Query 726 AGTTGGATCACCATTCTTACTGGAAAGATGACAGTGACTTCAGTGACATTTTTGATGTTA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTTGGATCACCATTCTTACTGGAAAGATGACAGTGACTTCAGTGACATTTTTGATGTTA 777
Query 786 ACTGGTTCATATCTTCTCTCGCCAAAGATGTGACTATAGTAAAGAGAGTTCCCGACAGAG 845
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 778 ACTGGTTCATATCTTCTCTCGCCAAAGATGTGACTATAGTGAAGAGAGTTCCTGACAGAG 837
Query 846 TCATGCGTGCGATGGAGAAACCTCCTTATACCACACGTGTGCCTCGAAAGTCTACTCTTG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCATGCGTGCGATGGAGAAACCTCCTTATACCACACGTGTGCCTCGAAAGTCTACTCTTG 897
Query 906 AGTATTATCTTGACCAAGTATTGCCAATTCTCACGAGGAGACATGTTTTACAATTGACAA 965
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 AGTATTATCTTGACCAAGTATTGCCAATTCTCTCGAGGAGACATGTTTTACAATTGACAA 957
Query 966 AGTTTGACTACAGACTAGCAAATGATCTAGATGAAGACATGCAAAAGTTGCGCTGCAGGG 1025
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 958 AGTTTGACTACAGACTAGCAAATGATCTAGACGAAGACATGCAAAAGTTGCGGTGCAGGG 1017
Query 1026 TCAACTATCATGCTTTAAGATTCACAAAGCGGATACAATCAGTTGGGATGAAAGTGGTCA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCAACTATCATGCTTTAAGATTCACAAAGCGGATACAATCAGTTGGGATGAAAGTGGTCA 1077
Query 1086 AGAGGATGAGAAAGATGGCCAAACGTTTTATTGCTGTCCATTTGAGATTTGAGCCTGACA 1145
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1078 AGAGGATGAGAAAGATGGCCAAACGTTTTATTGCTGTCCACTTGAGATTTGAGCCTGACA 1137
Query 1146 TGCTAGCCTTTTCTGGTTGTGACTTTGGTGGGGGTGAAAAAGAGAGAGCTGAGCTAGCAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGCTAGCCTTTTCTGGTTGTGACTTTGGTGGGGGTGAAAAAGAGAGAGCTGAGCTAGCAG 1197
Query 1206 AAATAAGAAAACGATGGGACACATTGCCTGATCTGGACCCTCTTGAAGAAAGAAAGCGTG 1265
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1198 AAATAAGAAAACGATGGGACACATTGCCTGATCTGGACCCTCTGGAAGAAAGAAAGCGTG 1257
Query 1266 GGAAATGCCCTCTTACACCTCATGAAGTGGGCTTAATGCTGCGCGCTCTTGGTTTTACAA 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAAATGCCCTCTTACACCTCATGAAGTGGGCTTAATGCTGCGCGCTCTTGGTTTTACAA 1317
Query 1326 ACGACACATATATCTATGTCGCATCTGGAGAAATATATGGTGGTGAAAAGACACTGAAAC 1385
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1318 ACGACACATATATCTATGTTGCATCTGGAGAAATATATGGTGGTGAAAAGACATTGAGAC 1377
Query 1386 CACTGAGAGAGCTGTTTCCAAACTTTTACACCAAGGAAATGCTTGCCAACGATGAGCTCA 1445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CATTGAGAGAGCTGTTTCCAAACTTTTACACCAAGGAAATGCTTGCCAACGATGAGCTCA 1437
Query 1446 AGCCTCTGCTTCCCTATTCTTCACGCCTTGCTGCCATTGACTACATTGTTAGTGACGAAA 1505
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1438 AGCCTCTGCTTCCCTTTTCTTCACGCCTTGCTGCCATTGACTACATTGTTAGTGATGAAA 1497
Query 1506 GCGATGTGTTTATCACTAATAATAATGGAAATATGGCCAAGATTCTTGCAGGCCGAAGGA 1565
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 GCGACGTGTTTATCACTAATAATAATGGAAATATGGCGAAGATTCTTGCAGGCCGAAGGA 1557
Query 1566 GGTACATGGGTCACAAGAGGACCATCAGGCCAAATGCAAAGAAGCTCAGTGCATTGTTCA 1625
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1558 GGTACATGGGGCACAAGAGGACCATCAGGCCAAATGCAAAGAAGCTCAGTGCTTTGTTCA 1617
Query 1626 TGGACCGGGAAAAGATGGAGTGGCAAACTTTCGCCAAAAAAGTGAAATCTTGTCAACGTG 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1618 TGGACCGGGAAAAGATGGAGTGGCAAACTTTCGCCAAAAAAGTGAAATCTTGTCAGCGTG 1677
Query 1686 GATTCATGGGTGATCCAGATGAGTTCAAACCAGGACGCGGTGAATTCCACGAGTACCCGC 1745
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1678 GATTCATGGGTGATCCAGATGAGTTCAAACCAGGACGCGGTGAGTTCCACGAGTACCCAC 1737
Query 1746 AATCTTGCATTTGTCAGAGACCCTTCTCTTACGACAAAACCTCAACGGATGATGAAGAAG 1805
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1738 AATCTTGCATATGTCAGAGACCCTTCTCTTACGACAAAACCTCAACTGACGATGAAGAAG 1797
Query 1806 AAGACATGTCAGAAGAGAACCACAACAGCACCAGCCCTGGACATGTACATTTGTCTTCAG 1865
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1798 AAGACATGTCAGAAGAGAACCACAACAGCACTAGCCCTGGACATGTACATTTGTCTTCAG 1857
Query 1866 CAGACAATGAGCGCGACGAAGTTTTCCCTGACTAGCAAATTGGTTCTGA-GGTCGCTGGA 1924
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1858 CAGACAATGAGCGCGACGAAGTTTTCCCTGACTAGCAAATTGGTTCTGCTGGTCACTGGA 1917
Query 1925 GATTTTACTGTAACCAGCTGTTGTAAGGAGATTGATCAATCACAG-TAGATCGAGGAGAG 1983
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1918 GATTTTACTGTAACCAGCTGTTGTAAGGAGATTGATCAATCACAGGTAGATCGAGGAGAG 1977
Query 1984 GAATAGGAGGCTTCCCGCGTAGCTACTTGTTGCTTCAAGTGTTCATAGATACTTCTATCG 2043
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GAATAGGAG-CTTCCCGCTTAGCTACTTGTTGCTTCAAGTGTTCATAGATACTTCTATCG 2036
Query 2044 AATAGGCATACATAACCCAAGCTCTCTCT-TTGTTTCTTTCTGATTTTGAAACACCACCA 2102
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 2037 AATAGGCATACATAACCCA-GCTCTCT-TGTTGTTTCTTTCTGATTTTGAAACACCACCA 2094
Query 2103 AAACTCTCTCTTGTCTTGTACTTGTCTTATATTATTACCTCATATCTAGTTTTTGGTTTT 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 AAACTCTCTCTTGTCTTGTACTTGTCTTATATTATTACCTCATATCTAGTTTTTGGTTTT 2154
Query 2163 CTTTTGTATTCCCTTAGATTTCCTGAAATGTATAATCAAGTTTTCATCTGATTCCTAACA 2222
|||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2155 CTTTTGTATTCCTTTAGATTTCCTGAAATGTAAAATCAAGTTTTCCTCTGATTCCTAACA 2214
Query 2223 TCCTTTTGTTTGTATTTCATTTTGAAAATCAGAAAATATGTGG 2265
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TCCTTTTGTTTGTATTTCATTTTGAAAATCAGAAAATATGTGG 2257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86617217130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5