BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16670.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946568 jgi|Araly1|946568|scaffold_702797.1 2025 0.0
> Ahg946568 jgi|Araly1|946568|scaffold_702797.1
Length=1339
Score = 2025 bits (1096), Expect = 0.0
Identities = 1264/1344 (94%), Gaps = 16/1344 (1%)
Strand=Plus/Plus
Query 88 TAATCAGAGATCTGATCTAAATGGAGTATGACCGTACGTTGAACTTGATTCCATACGGAC 147
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||
Sbjct 1 TAATCAGAGATCTGATCTAAATGGAGTATGACCGTACGTTAAACTTCATTGCATATGGAC 60
Query 148 TACAAGGAGTAAGAGAGGAGGAAGAAATC------GAAGAAGACGATGAAGAGAGCATGA 201
|||||| |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 61 TACAAGAAGTAAGAGAGGAAGAAGAAATCGAAGAAGAAGAAGACGATGAAGAGAGCATGA 120
Query 202 CGTTGTCGTCAGTACCAGAAAACGAAACGTCGGAGTGTTCTTCGCCTCCGGCGACGTATC 261
||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 121 CGTTGTCGTCAGTGCCTGAAAACGAAACGTCTGAGTGTTCTTCACCTCCGGCTACGTATC 180
Query 262 CTCCAATCCCTCCTCGGCCTAAAACACCGAGAGAGCCGATGGAGTTTCTATGCAGATCAT 321
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCAATCCCTCCTCGGCCTAAAACTCCGAGAGAGCCGATGGAGTTTCTATGCAGATCAT 240
Query 322 GGAGTCTTTCTACTTCTGAGATCTCTTTAGCTTTATCATCTCAGAAATCTGATAAACAAC 381
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GGAGTCTTTCTACGTCTGAGATCTCTTTAGCTTTATCATCTCAAAAATCTGATAAACAAC 300
Query 382 TCAACAAAAACCCTAATATTTCTCAGTTGGCCGATGTCACTTCT-CTGGCTCCGGTAGCA 440
|||||||||||||||||||||||| |||||||||||||||| || | |||||||| ||||
Sbjct 301 TCAACAAAAACCCTAATATTTCTCGGTTGGCCGATGTCACTGCTAC-GGCTCCGGCAGCA 359
Query 441 CCACCACCGCCGCTACAAACGGGAAAGCTAGCGAGTGCGGTTCACGCGCGGAGAACGGGA 500
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 360 CCACCACCGCCGCTACAGACGGGAAAGCTAGCGAGTGCGGTTAACGCGCGGAAAACGGGA 419
Query 501 ACGATCGGAAAATGGTTCCACCACCGAGAATTCGTCGGCGGGAAGGTCTCCGCCGTAAAG 560
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 420 ACGATCGGAAAATGGTTCCACCACCGAGATTTCGTCGGCGGAAAGGTCTCCGCCGTAATG 479
Query 561 AAGAGAGATAGAGTTCGCGTGGAGAAAGCTCATCTGCATTCCGCCGTGTCCATTGCGTCT 620
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGAGAGATAAAGCTCGCGTGGAGAAAGCTCATCTGCATTCCGCCGTGTCCATTGCGTCT 539
Query 621 CTGGCGACGGCAATCGCCGCAGTGACCGCTTCAGGCAATCAAGACGGCTTCGCTGGATCA 680
|| |||||||| |||||||| ||||||||||||| ||| |||||||||||| ||||||||
Sbjct 540 CTAGCGACGGCTATCGCCGCCGTGACCGCTTCAGACAACCAAGACGGCTTCACTGGATCA 599
Query 681 AAGATGAGCTCAGCCCTTGCCTCGGCGTCGGAGTTGTTAGCTTCTCACTGCCTCGAATTG 740
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 600 AAGATGAGCTCAGCGCTTGCCTCGGCATCGGAGTTGTTAGCTTCTCACTGCCTTGAATTG 659
Query 741 GCGGAGCTTGCCGGCGCCGATCACGATCGCGTCGTCTCTGCTGTCCGATCAGCTGTTGAT 800
|||||||||||||||||||| |||||||||||||||||||||||| |||| || || |||
Sbjct 660 GCGGAGCTTGCCGGCGCCGACCACGATCGCGTCGTCTCTGCTGTCAGATCCGCCGTCGAT 719
Query 801 GTTCGTGGACCTGGCGATTTGTTGACTCTAACTGCTGCAGCTGCAACAGCATTGAGAGGA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTCGTGGACCTGGCGATTTGTTGACTCTAACTGCTGCAGCTGCAACAGCATTGAGAGGA 779
Query 861 GAAGCAGCTTTGAGGGTAAGACTACCAAAGGAAGCTAAGAACAGTGCAGCTATAAGCCCC 920
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGCAGCTCTGAGGGCAAGGCTACCAAAGGAAGCTAAGAACAGTGCAGCTATAAGCCCT 839
Query 921 TGTGAGAGAGTTTTACCAGAGACTCATAGTTGCTCTTCTGAGCTCGATCGCACTAGCACG 980
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 TGTGAGAGAGTTTTAACAGAGACTCATAGTTGCTCTTCTGAGCTCGATCGCAGTAGCACG 899
Query 981 ACCGATGAACTCATATCTGCAAAAGGAGTTGAAGAATCAACTGGAGAGCTAATGCAGTGC 1040
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCGACGAACACATATCTGCAAAGGGAGTTGAAGAATCAACTGGAGAGCTAATGCAGTGC 959
Query 1041 ACACGAAACGGTGTTCTGCGGTGGAAGCATGTAAAAGTGTACATCAACAAAAAATCTCAG 1100
||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 960 ACACGAAACGGAGTTCTGCGGTGGAAGCATGTAAAAGGGTACATCAACAAGAAATCTCAG 1019
Query 1101 GTCATAGTAGAAATCAAAAGCAAACACGTTGTAGGAGCATTCTCCATGAAAAGCAAAGGC 1160
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 GTCGTAGTAGAAATCAAAAGCAAACATGTTGTAGGAGCATTCTCCATGAAAAGCAAAGGC 1079
Query 1161 ATTGTAAATGATGTATGCGAGACAGTCTCAGGCCTGCAAAATGGAAAAGACACGGAAAAC 1220
|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1080 ATTGTAAATGATGTATGCGAGAAAGTCTCAGGCCTGCAAAATGGAAAAGAAATGGAAAAT 1139
Query 1221 ACAGAAGAAGAGCTCTATTTCGGAATCGGTACAGGGAAAGGTCTGACAAAGTTCAAGTGC 1280
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1140 ACAGAAGAAGAGCTCTATTTCGGAATTAGTACAGGGAAAGGTCTAACAAAGTTCAAGTGC 1199
Query 1281 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGAGCAAGGCTGATAAGCAGACATGGGTGGATAGCATCCGGAATCTTCTCCATCGAGTA 1259
Query 1341 ACTGCTGTTGAGGT---CGACACTTCTCTTGAAACTATAAACATTAAC-GATAGCACATA 1396
|||||||||||||| |||||||| ||||||||||| ||||||| | ||||||| |||
Sbjct 1260 ACTGCTGTTGAGGTTATCGACACTTGTCTTGAAACTACAAACATTG-CTGATAGCAAATA 1318
Query 1397 AATCATGATGTCTTGTGTTAACGG 1420
||||||| | |||||||||||||
Sbjct 1319 AATCATG-T--CTTGTGTTAACGG 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5