BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16680.1

Length=2962
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890558 jgi|Araly1|890558|Al_scaffold_0007_2544                    542    7e-153
  Ahg946568 jgi|Araly1|946568|scaffold_702797.1                        244    2e-63 


> Ahg890558 jgi|Araly1|890558|Al_scaffold_0007_2544
Length=351

 Score =  542 bits (293),  Expect = 7e-153
 Identities = 314/324 (97%), Gaps = 2/324 (1%)
 Strand=Plus/Plus

Query  2142  AAGAAAGCAATCTTGGCCGGATTCTTCCCGCATTCTGCAAAGTTACAAAAGAATGGATCG  2201
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     AAGAAAGCAATCTTGGCCGGATTCTTCCCGCATTCTGCAAAGTTACAAAAGAATGGATCG  60

Query  2202  TACAGAAGAGTCAAAGAACCTCAGACAGTTTATGTACACCCTAACTCAGGCTTATTTGGG  2261
             ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61    TACAGAAGAGTGAAAGAACCTCAGACAGTTTATGTACATCCTAACTCAGGCTTATTTGGG  120

Query  2262  GCGTCACCTAGTAAGTGGTTGGTGTATCATGAACTAGTACTTACTACCAAGGAATATATG  2321
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121   GCGTCACCCAGTAAGTGGTTGGTGTATCATGAACTAGTACTTACTACCAAGGAATATATG  180

Query  2322  AGGCATACAACTGAAATGAAGCCTGAGTGGCTAATTGAAATAGCTCCTCATTACTACAAG  2381
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  181   AGGCATACAACTGAAATGAAGCCTGAGTGGCTAATTGAAATAGCTCCTCACTACTACGAG  240

Query  2382  CTTAAAGACATTGAAGATACTCGGCCAAAGAAAACACAGAGAAGAATCGAA-GAAGCCTC  2440
             |||||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||
Sbjct  241   CTTAAAGACATTGAAGATACTCGGCCAAAGAAAAAACAGAGAAGAAGCGAAAGA-GCCTC  299

Query  2441  GACGTCTAAGGTTGATACTAACAA  2464
             |||||| |||||||||||||||||
Sbjct  300   GACGTCAAAGGTTGATACTAACAA  323


> Ahg946568 jgi|Araly1|946568|scaffold_702797.1
Length=1339

 Score =  244 bits (132),  Expect = 2e-63
 Identities = 148/155 (95%), Gaps = 3/155 (2%)
 Strand=Plus/Minus

Query  2810  GTTTCAAGAGAAGTGTCG---ACCTCAACAGCAGTTACTCGATGGAGAAGATTCCGGATG  2866
             ||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct  1294  GTTTCAAGACAAGTGTCGATAACCTCAACAGCAGTTACTCGATGGAGAAGATTCCGGATG  1235

Query  2867  CTATCCACCCATGTCTGCTTATCAGCCTTGCTCTTGCACTTGAACTTTGTCAGACCTTTC  2926
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1234  CTATCCACCCATGTCTGCTTATCAGCCTTGCTCTTGCACTTGAACTTTGTTAGACCTTTC  1175

Query  2927  CCTGTACCGATTCCGAAATAGAGCTCTTCTTCTGT  2961
             |||||||  ||||||||||||||||||||||||||
Sbjct  1174  CCTGTACTAATTCCGAAATAGAGCTCTTCTTCTGT  1140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 111832959320


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5