BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16695.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890556 jgi|Araly1|890556|Al_scaffold_0007_2542                    289    2e-77


> Ahg890556 jgi|Araly1|890556|Al_scaffold_0007_2542
Length=174

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 168/174 (97%), Gaps = 0/174 (0%)
 Strand=Plus/Plus

Query  71   ATGCCGTTTAAGACGGTGATAGAAGTGGAGCCTCCGAGTCTGTTACGGTACTTGATCGGA  130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCCGTTTAAGACGGTGATAGAAGTGGAGCCTCCGAGTCTGTTACGGTACTTGATCGGA  60

Query  131  TCGGCGGTGATGATGATCGGTGTTGTATTACCGGTTGGTTACATGATGTTTCGCAACAAA  190
             ||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct  61   GCGGCGGTGATGATGATCGGCGTCGTATTACCCGTTGGTTACATGATGTTCCGCAACAAA  120

Query  191  CGCGTCCCCTTCTCATCTTCGTACTCTAAACAGACGAACAAAGTTTTGATATAG  244
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGCGTCCCCTTCTCGTCTTCGTACTCTAAACAGACGAACAAAGTTTTGATATAG  174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5