BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16700.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890555 jgi|Araly1|890555|Al_scaffold_0007_2541 2036 0.0
> Ahg890555 jgi|Araly1|890555|Al_scaffold_0007_2541
Length=1356
Score = 2036 bits (1102), Expect = 0.0
Identities = 1280/1365 (94%), Gaps = 16/1365 (1%)
Strand=Plus/Plus
Query 48 ATGAAACCTCG-TTTTCCTCAAAATGTCTATTTTTTGGCTCGCTATTCATATCTCCGCCG 106
||||||||||| |||| |||| |||| ||| ||||| |||||||||||| ||||||| ||
Sbjct 1 ATGAAACCTCGCTTTT-CTCATAATGCCTACTTTTTAGCTCGCTATTCACATCTCCGTCG 59
Query 107 CTTTCAGCATAGTCAACGTCGAACCTTCAGCTCTTTCCTCAACAATATCCGTTCGAATTA 166
||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 60 CTTCCACCATAGTCATCGTCGAACTTTCAGCTCTTTTCTCAACAATATCCGTTCGAATTA 119
Query 167 TTCCGGTGCTCGTGCTTCGCCTCTCGGCGGCAGCAGCGGAGCCGGAGCCGGAGCCGGAGG 226
|| ||| || | |||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 120 TTACGGCACTAGCGCTTCGTCTCTCGGCGGCAGCAGCGGAGCCGGA----G-G-CGGAGG 173
Query 227 AGGTGGAACCGGAGATTCCAAAGGCAATGCTTTTCTTGTGCCCGGAGCAACAATGGCTAC 286
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 174 TGGTGGAACTGGAGATTCCAAAGGCAATGCTTTTCTTTTGCCCGGAGCAACAATGGCTAC 233
Query 287 TATCCTTATGCTTGGAGCTCTTCATGCTCGCCGCCTCTATGAAGACAAGAAGATCGAAGA 346
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 234 TATCCTTATGCTTGGAGCTCTTCATGCCCGCCGACTCTATGAAGACAAGAAGATCGAAGA 293
Query 347 GAAACGGGAGAA-GGGAATCGAACTTGAGTTCCACCCAGATATCAAAGCCTCGTTCCTTG 405
||||||||| || |||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 294 GAAACGGGA-AAGGGGAATTGAGCTTGAGTTCCACCCAGATGTTAAAGCCTCGTTCCTTG 352
Query 406 GAGTTCTGCCTCTGCGATCAATCTCAAGAGCTTGGGGCTCCTTTATGAGTCTGGAAATTC 465
|| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 353 GAATTCTGCCTCTGCGATCAATCTCAAGAGCCTGGGGCTCCATAATGAGTCTGGAAATTC 412
Query 466 CGGTGTGGATGCGTCCATATGCTTATAAAGCCTGGGCTCGAGCTTTCCATTCAAATCTTG 525
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 413 CGGTGTGGATGCGTCCGTATGCTTATAAAGCATGGGCTCGAGCTTTCCATTCAAATCTTG 472
Query 526 AAGAAGCAGCTCTGCCTCTTGAAGAATATACTTCATTGCAGGATTTCTTTGTTCGTAGCT 585
|||||||||||||||||||| |||||||| |||| || |||||||||||||| |||||||
Sbjct 473 AAGAAGCAGCTCTGCCTCTTAAAGAATATGCTTCGTTACAGGATTTCTTTGTCCGTAGCT 532
Query 586 TGAAAGAAGGTTGCAGGCCTATCGACCCTGATCCTTGTTGTCTGGTTAGTCCTGTGGATG 645
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 533 TGAAAGAAGGTTGCAGGCCTATCGACCCCGATCCTTGTTGTCTGGTTAGTCCTGTTGATG 592
Query 646 GCACCGTTCTAAGGTTTGGGGAGTTAAAAGGGAA-TAGAGGGATGATCGAGCAAGTTAAA 704
||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 593 GCACCATTCTAAGGTTTGGGGAGTTAAAA-GGAAGTAGAGGGATGATCGAGCAAGTCAAA 651
Query 705 GGACATTCTTACTCGGTACCAGCTCTTCTAGGAAATAACTCTCTGCTTCCCATGGAACCT 764
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 652 GGACATTCTTACTCAGTACCGGCTCTTCTAGGAAATAACTCTCTGCTTCCAATGGAACCT 711
Query 765 GAAGGT-AAGAATGAGTCTAAGGAAGAAGCTGTTGGAGATAAGAGCGACAAATCTTGGTT 823
|||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 GAAGGTAAAG-ATGAGTCTGAGGAAGAAGCTGTTGGAGATACGAGCGACAAATCTTGGTT 770
Query 824 GAGAGTCTCTTTGGCATCTCCAAAATTACGGGAGAACGTCTCAGCCAGTCCAATGAAGGG 883
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 771 GAGAGTCTCTTTGGCATCTCCAAAATTACGGGAGAACATCTCAGCTAGTCCAATGAAGGG 830
Query 884 GCTCTATTATTGTGTAATATACCTAAAACCAGGGGATTATCATCGAATACACTCTCCGGC 943
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 831 GCTCTATTATTGTGTGATATACCTAAGACCAGGGGACTATCATCGAATACACTCTCCGGT 890
Query 944 TGACTGGAATGCAACT-GTTCGTCGACACTTTGCAGGCCGGTTGTTTCCTGTGAACGAGC 1002
|||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 891 TGACTGGAATGCAA-TGGTCCGTCGACACTTTGCAGGCCGGTTGTTTCCCGTGAACGAGC 949
Query 1003 GTGCTACAAGAACGATAAGGAATCTCTATGTCGAGAATGAAAGGGTTGTGCTAGAAGGGA 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 950 GTGCTACAAGAACGATAAGGAATCTCTATGTCGAGAATGAAAGGGTTGTGCTTGAAGGGA 1009
Query 1063 TATGGAAAGAAGGTTTTATGGCACTTGCTGCTGTAGGCGCGACCAACATTGGATCCATTG 1122
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1010 TATGGAAAGAAGGTTTTATGGCACTTGCTGCTGTTGGTGCGACCAACATTGGATCCATTG 1069
Query 1123 AGCTTTTCATTGAACCTGAGCTAAGAACAAACAAGCCAAAGAAGAAGCTATTTCCTACAG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AGCTTTTCATTGAACCTGAGCTAAGAACAAACAAGCCAAAGAAGAAGCTATTTCCTACAG 1129
Query 1183 AGCCACCAGAGGAGCGGGTGTATGATCCAGAAGGTCTTGGCTTAAGGCTCGAGAAGGGGA 1242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1130 AGCCACCAGAGGAGCGGGTGTATGATCCAGAAGGTCTTGGCTTAAAGCTCGAGAAAGGGA 1189
Query 1243 AAGAGGTAGCTGTATTCAACATGGGATCAACCGTAGTGCTCATTTTTCAAGCACCAACCG 1302
||||||||| |||||||||||||||||| || ||||||||| |||| |||||||||||||
Sbjct 1190 AAGAGGTAGGTGTATTCAACATGGGATCTACTGTAGTGCTCGTTTTCCAAGCACCAACCG 1249
Query 1303 CAAACACACCCGAGGGTTCAAGCAGTTCTTCAGATTACAGATTCTGTGTCAAACAAGGAG 1362
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1250 CAAACTCACCCGAGGGTTCAAGCAGTTCCTCAGATTACAGATTCTGTGTTAAACAAGGAG 1309
Query 1363 ACAGAGTCCGCGTTGGACAAGCATTGGGAAGATGGAAAGAGGAAT 1407
||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1310 ACAGAGTCCGCGTTGGACAAGCATTGGGAAGGTGGAATGAGGAAT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5