BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16710.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946563 jgi|Araly1|946563|scaffold_702792.1 859 0.0
Ahg943308 jgi|Araly1|943308|scaffold_603852.1 394 6e-109
> Ahg946563 jgi|Araly1|946563|scaffold_702792.1
Length=573
Score = 859 bits (465), Expect = 0.0
Identities = 541/577 (94%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 189 AATCGAGAAGTTTAAAAATGGAGGAGGATAGAGAGAATGCAAAGAGAGTAGTGTTTGTAA 248
||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 4 AATCGAGTGGTGTAAAAAT---GGAGGATAGAGAGAATGCGAAGAGAGTAGTGTTTGTAA 60
Query 249 CTGTAGGAACAACGAGTTTCGATGCTCTTGTGAAAGCAGTGGTTAGTCAAAATGTTAAAG 308
||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 61 CTGTAGGAACAACGAGTTTCGATGCGCTTGTGAAAGCAGTGGTTAGTGAAGATGTTAAAG 120
Query 309 ACGAACTGCAGAAGAGAGGATTTACTCATCTTCTTATTCAAATGGGTCGAGGAATCTTTT 368
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ACGAATTGCAGAAGAGAGGATTTACTCATCTTCTCATTCAAATGGGTCGAGGAATCTTTT 180
Query 369 TCCCAACTAAGTGTGATGGAGCGGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 428
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCAAATAAGTGTGATGGAGCAGATGGATCATTAGTTGTGGATTACTTCACATTTTCCT 240
Query 429 CAAGTATCGCTGATTATATTCGATCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 488
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGTATCGCTGATTATATTCGGTCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAA 300
Query 489 GTATATTTGAGACACTGAAACTAGGGAAACCATTGATTGTGGTAGTGAACGAAGATCTGA 548
| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 301 GCATATTCGAGACACTAAAACTCGGGAAACCGTTGATTGTGGTAGTCAACGAAGATCTGA 360
Query 549 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACA 420
Query 609 CTCGTCCTCACTCCCTTCATCAAACCTTGACGAAAATGGAGTTGGGGTCTCTGGTTCAGT 668
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 421 CTCGTCCTCACACCCTTCATCAAACCTTGACGAAAATGGAGTTGGAGTCTCTGGTTCAAT 480
Query 669 ATACTCCAGGTGATGGAACTCCTGTTGCTCGCATTATCGACAGGTTCCTTGGATTCCCTG 728
|||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 481 ATACTCCAGGGGACGGAACTCCTGTTGCCCGCATTATCGACAGGTTCCTCGGATTCCCTG 540
Query 729 ATGATTAAACACAACACATACATGAAAACAAGTGTTT 765
|||||||| || || | || |||||||||||||||
Sbjct 541 ATGATTAAGCAGAA-A--TA--TGAAAACAAGTGTTT 572
> Ahg943308 jgi|Araly1|943308|scaffold_603852.1
Length=457
Score = 394 bits (213), Expect = 6e-109
Identities = 242/256 (95%), Gaps = 1/256 (0%)
Strand=Plus/Plus
Query 218 AGAGAGAATGCAAAGAGAGTAGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCTCTT 277
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 163 AGAGAGAATGCGAAGAGAG-AGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCGCTT 221
Query 278 GTGAAAGCAGTGGTTAGTCAAAATGTTAAAGACGAACTGCAGAAGAGAGGATTTACTCAT 337
|||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 222 GTGAAAGCAGTGGTTAGTGAAGATGTTAAAGACGAATTGCAGAAAAGAGGATTTACTCAT 281
Query 338 CTTCTTATTCAAATGGGTCGAGGAATCTTTTTCCCAACTAAGTGTGATGGAGCGGATGGA 397
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 282 CTTCTCATTCAAATGGGTCGAGGAAACTTTTTCCCAACTAAGTGTGATGGAGCAGATGGA 341
Query 398 TCATTAGTTGTGGATTACTTCACATTTTCCTCAAGTATCGCTGATTATATTCGATCTGCA 457
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 342 TCATTAGTTGTGGATTACTTCACATTTTCCTCGAGTATCGCTGATTATATTCGGTTTGCA 401
Query 458 TCTCTTGTTATTAGTC 473
||||||| ||||||||
Sbjct 402 TCTCTTGCTATTAGTC 417
Score = 71.3 bits (38), Expect = 1e-11
Identities = 51/57 (89%), Gaps = 2/57 (4%)
Strand=Plus/Plus
Query 122 AGCAAGATTCTTGGATCTGCCTCTTAAGATCGATCGGTGCTTTTG--TATCCTCAGA 176
||||||||||||||||||||||||||||| | ||||||||||| | | ||||||||
Sbjct 109 AGCAAGATTCTTGGATCTGCCTCTTAAGACCAATCGGTGCTTTCGCGTGTCCTCAGA 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5