BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16720.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493205 jgi|Araly1|493205|fgenesh2_kg.7__2638__AT4G16720.1 1389 0.0
Ahg934194 jgi|Araly1|934194|scaffold_402182.1 641 0.0
> Ahg493205 jgi|Araly1|493205|fgenesh2_kg.7__2638__AT4G16720.1
Length=841
Score = 1389 bits (752), Expect = 0.0
Identities = 798/820 (97%), Gaps = 3/820 (0%)
Strand=Plus/Plus
Query 4 CACTTTAAATCAGGAACAAACCCTTCACTGCGCCAGTGTTGTGCGGCTCTGCGAATCTTC 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 CACTTTAAATCAGGAACAAACCCTTCACTGCGCCAGTCTTGTGCGGCTCTGCGAATCTTC 60
Query 64 GAAAATGGGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGAT 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAAAATGGGTGCGTACAAGTATGTATCGGAGCTATGGAGGAAGAAACAGTCCGATGTGAT 120
Query 124 GAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCT 183
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATTCCTCCAGAGGGTGAGGTGTTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCT 180
Query 184 CGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTT 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTT 240
Query 244 TGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTAT 303
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGTTGTGTACCGTGTCCGTGTGAGACGTGGTGGTCGCAAGAGGCCAGTGCCTAAGGGTAT 300
Query 304 TGTGTATGGTAAGCCAACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCG 363
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGTATGGTAAGCCCACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCG 360
Query 364 TTCTGTTGCTGAGGAGCGTGCTGGCAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTGTTGCTGAGGAGCGTGCTGGCAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 420
Query 424 CTGGCTCAATGAGGATTCGACCTACAAGTACTACGAGATCATCTTGGTTGACCCAGCACA 483
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 421 CTGGCTCAATGAGGATTCGACGTACAAGTATTACGAGATCATCTTGGTTGACCCAGCACA 480
Query 484 CAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACCG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACCG 540
Query 544 TGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAGGTCTCCGCGGAAAGGGTCA 603
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 541 TGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAGGTCTTCGTGGAAAGGGTCA 600
Query 604 CAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAAAACAACTCTCTCAG 663
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 601 CAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAGAACAACTCCCTC-G 659
Query 664 -CCTTCGTCGTTACCGTTGATTGCCTTTTGCTTTTATTATTACTGTTATCATCTTCTAGG 722
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 TCCTTCGCCGTTACCGTTGATTGCCTTTTGCTTTTATTATCACTGTTATCATCTTCTAGG 719
Query 723 TTCCATGTTGTTGCACTTTTATCTCTCTCAGGATGACTTGTTTTT-GCAAATTTTGGAGA 781
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TTCCATGTTGTTGCACTTTTATCTCTCTCAGGATGACTTGTTTTTTGCAAATTTTGGAGA 779
Query 782 CTATACAATTATGCTTTGAACCTAAATTTTATATTTGCTT 821
||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CTATACAATTATGCTTTGAACCTAAGTTTTATATTTGCTT 819
> Ahg934194 jgi|Araly1|934194|scaffold_402182.1
Length=655
Score = 641 bits (347), Expect = 0.0
Identities = 545/640 (85%), Gaps = 15/640 (2%)
Strand=Plus/Plus
Query 53 TGCG-AATCTTCGA-AAATGGGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAAC 110
|||| || ||| || |||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 5 TGCGTAA-CTTGGAGAAATGGGTGCGTACAAGTATGTCTCGGAGCTATGGAGGAAGAAGC 63
Query 111 AGTCCGATGTGATGAGATTCCTCCAGA-GGGTTAGGTGCTGGGAGTACAGACAGCAACCT 169
|||| ||||||||||| ||| || | | || ||||| ||||| |||||||| ||||||
Sbjct 64 AGTCGGATGTGATGAGGCACCTGCA-ACGCGTGAGGTGTTGGGATTACAGACAACAACCT 122
Query 170 TCGATTGTTCGTCTCG--TCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTT-GGGTTAC 226
||||| |||||| | | || | || |||||||| || || ||||| ||||| ||||| |
Sbjct 123 TCGATCGTTCGT-TTGACTC-GACCCACTCGTCCAGACAAAGCTCGCCGTTTGGGGTT-C 179
Query 227 AAGGCCAAGCAGGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGG 286
||||| |||||||| | ||| |||||| | || || |||||||| |||||| | ||||||
Sbjct 180 AAGGCGAAGCAGGGATATGTGGTGTACAGAGTGCGAGTGAGACGAGGTGGAAGGAAGAGG 239
Query 287 CCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACACAACTCAAG 346
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 240 CCAGTTCCTAAGGGTATTGTGTATGGTAAGCCAACGAACCAAGGAGTGACACAACTCAAG 299
Query 347 TTCCAGCGTAGCAAGCGTTCTGTTGCTGAGGAGCGTGCTGGCAGGAAA-TTGGGTGGTCT 405
||||| || |||||| | |||||||| |||||||| ||||| ||||| || | |||| |
Sbjct 300 TTCCAACGAAGCAAGAGGTCTGTTGCGGAGGAGCGAGCTGGGAGGAAGCTTAG-TGGTTT 358
Query 406 CAGAGTTGTCAACTCTTACTGGCTCAATGAGGATTCGACCTACAAGTACTACGAGATCAT 465
|||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 359 GAGAGTTGTCAACTCCTACTGGATCAACGAGGATTCGACTTACAAGTACTACGAGATCAT 418
Query 466 -CTTGGTTGACCCAGCACACAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCA 524
|||| | || || || || || || ||||||||||||||||||||||||||||| || |
Sbjct 419 TCTTG-TGGATCCGGCTCATAACGCAGTGCGTAATGACCCGAGAATCAACTGGATTTGTA 477
Query 525 ACCCAGTTCACAAGCACCGTGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAG 584
|||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 478 ACCCTGTTCACAAGCACCGTGAGCTCAGAGGTCTCACATCAGAAGGAAAGAAGAACAGAG 537
Query 585 GTCTCCGCGGAAAGGGTCACAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGA 644
|| | || ||||||||||| |||||||||||||| || ||||| || || ||||| ||||
Sbjct 538 GTTTGCGTGGAAAGGGTCATAACAACCACAAGAATCGACCATCACGTAGAGCTACTTGGA 597
Query 645 AGAAAAACAACTCTCTCAGCCTTCGTCGTTACCGTTGATT 684
||||||||||| ||||| ||| | |||||||||||||||
Sbjct 598 AGAAAAACAACACTCTCTCCCTCCTTCGTTACCGTTGATT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5