BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16740.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493202 jgi|Araly1|493202|fgenesh2_kg.7__2635__AT4G16740.1 1893 0.0
> Ahg493202 jgi|Araly1|493202|fgenesh2_kg.7__2635__AT4G16740.1
Length=1801
Score = 1893 bits (1025), Expect = 0.0
Identities = 1169/1238 (94%), Gaps = 11/1238 (1%)
Strand=Plus/Plus
Query 10 TAAAATATCATAGCGGAGTCTAAAGAAGAGTTCATCCAATTATTTAACTCTTTAGTGTAA 69
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAAAATATTATAGCGGAGTCTAAAGAAGAGTTCATCCAATTATTTAACTCTTTAGTGTTA 60
Query 70 TCATTAGCAACGCAAAGAAATGCCTAAACGACAGGCTCAACGGCGTTTCACTCGCAAGAC 129
|||||||||| |||||||||||||||||||||| | ||||| |||||||||| ||||| |
Sbjct 61 TCATTAGCAAAGCAAAGAAATGCCTAAACGACATGTTCAACCGCGTTTCACTGGCAAGGC 120
Query 130 TGACTCGAAAACACCATCCCAGCCTCTGGTATCCCGTCGCTCTGCAAACTATCAACCGTC 189
||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 121 TGAGTCGAAGACACCATCCCAGCCTCTTGTAGCCCGTCGCTCTGCAAACTATCAACCGTC 180
Query 190 TCTTTGGCAGCACGAATATCTCCTCTCGCTCGGTAATACATATGTGAAAGA-G--GACAA 246
||||||| ||||||| |||||||||||||||||||||||| |||||||||| | |||||
Sbjct 181 TCTTTGGGAGCACGAGTATCTCCTCTCGCTCGGTAATACAGATGTGAAAGAGGCCGACAA 240
Query 247 CGTCGAGAGAGTTACGTTATTGAAGCAGGAAGTGAGTAAAATGCTCAATGAAACGGAAGG 306
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CATCGAGAGAGTTATGTTATTGAAGCAGGAAGTGAGTAAAATGCTCAATGAAACGGAGGG 300
Query 307 TTTACTCGAACAGCTAGAGCTCATCGACACTTTACAAAGGCTTGGAGTTTCTTACCATTT 366
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 301 TTTACTCGAACAGCTAGAGCTCGTCGACACTTTACAGAGGCTTGGAGTTTCTTACCATTT 360
Query 367 TGAACAAGAAATCAAGAAGACACTAACGAATGTGCATGTTAAAAATGTGCGAGCACACAA 426
||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 361 TGAACGTGAAATCAAGAAGACTCTAACGAATGTGCATGTAAAAAATGTGAGAGCACACAA 420
Query 427 AAACCGGATAGATCGAAACCGATGGGGAGATTTATACGCGACCGCCCTTGAGTTCCGACT 486
||| ||||||||||| | |||| ||| |||||||||||||||||||||||||||||
Sbjct 421 AAAACGGATAGATCG----C--TGGGAAGACTTATACGCGACCGCCCTTGAGTTCCGACT 474
Query 487 CCTAAGGCAACATGGTTTCAGTATCGCACAAGATGTTTTTGACGGAAATATTGGAGTTGA 546
|||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 475 CCTACGGCAACATGGTTTCAGTATCGCAGAAGATGTTTTAGACGGAAATATTGGAGATGA 534
Query 547 TTTGGATGATAAAGACATCAAGGGTATTCTTTCACTATACGAAGCTTCATATCTCTCGAC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTTGGATGATAAAGACATCAAGGGTATTCTTTCACTATACGAAGCTTCATATCTCTCGAC 594
Query 607 CAGAATCGATACTAAATTGAAAGAGAGCATATACTATACAACAAAACGACTTAGAAAATT 666
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 CAGAATCGATACTAAATTGAAAGAGAGCATATGCTATACAACAAAACGACTTAGAAAATT 654
Query 667 TGTGGAGGTAAATAAGAATGAGACCAAATCTTACACTCTTCGAAGGATGGTTATACATGC 726
||||||||| ||||||| ||||| ||||| ||||||||||||||||||||| || |||||
Sbjct 655 TGTGGAGGTTAATAAGACTGAGAACAAATATTACACTCTTCGAAGGATGGTGATCCATGC 714
Query 727 GTTAGAGATGCCGTACCACCGGAGAGTGGGAAGACTAGAAGCAAGATGGTACATAGAAGT 786
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 715 CTTAGAGATGCCGTACCACCGGAGAGTGGGAAGATTAGAAGCAAGGTGGTACATAGACGT 774
Query 787 GTACGGAGAGAGACACGACATGAACCCTATCTTGCTTGAACTCGCGAAACTTGATTTTAA 846
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||
Sbjct 775 GTACGGAGAGAGACACGACTTGAACACTATCTTGCTTGAATTCGCGAAACTTGATTTCAA 834
Query 847 TTTCGTACAAGCTATCCATCAAGACGAGCTCAAATCCCTCTCTAGTTGGTGGAGCAAGAC 906
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 TTTCGTACAAGCTATCCATCAAGACGAGCTCAAATCTCTCTCTAGTTGGTGGAGCAAGAC 894
Query 907 GGGATTAACAAAACACCTCGATTTCGTTAGAGATCGAATAACGGAGGGTTATTTCTCGAG 966
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 895 GGGATTAACAAAACACCTCGATTTCGTTAGAGATCGAATAACGGAGAGTTATTTCTCGAG 954
Query 967 TGTTGGAGTAATGTATGAGCCCGAGTTTGCATATCACCGACAAATGCTTACAAAGGTTTT 1026
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 955 TGTTGGAGTAATCTATGAGCCGGAGTTTGCATATCACCGACAAATGCTTACAAAAGTTTT 1014
Query 1027 CATGCTCATTACAACTATCGACGATATATACGATATTTATGGGACACTTG-AGGAGCTCC 1085
|||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 1015 CATGCTTATAACAACTATCGACGATATATACGATATTTATGGGACA-TTGGAGGAGCTTC 1073
Query 1086 AACTATTCACGACCATAGTTGAAAAATGGGATGTGAATCGTCTTGAAGAACTTCCCAACT 1145
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 AACTATTCACAACCATAGTTGAAAAATGGGATGTGAATCGTCTTGAAGAACTTCCCAAGT 1133
Query 1146 ACATGAAGTTATGTTTTCTCTGCCTCGTCAACGAAATCAATCAGATTGGATATTTTGTAC 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1134 ACATGAAGTTATGTTTTCTCTGCCTCGTCAACGAAATCAATCAGATTGGATATTTTGTTC 1193
Query 1206 TCAGAGATAAAGGGTTTAATGTGATTCCTTACCTCAAA 1243
||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TCAGAGATAAAGGGTTTAATGTGATTCCTTACCTCAAA 1231
Score = 628 bits (340), Expect = 3e-179
Identities = 484/547 (88%), Gaps = 35/547 (6%)
Strand=Plus/Plus
Query 1250 TGGGCAGATATGTGTACAACGTTTTTGAAAGAGGCAAAGTGGTATAAAAGTGGTTACAAA 1309
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1280 TGGGCAGATATGTGTACAACGTTTTTGAAAGAGGCAATGTGGTACAAAAGTGGTTACAAA 1339
Query 1310 CCTAACTTCGAAGAATACATGCAAAATGGTTGGATCTCAAGCTCAGTCCCTACAATACTT 1369
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1340 CCTAACTTCGAAGAATACATGCATAATGGTTGGATCTCAAGTTCAGTCCCTACAATACTT 1399
Query 1370 CTACACTTGTTCTGTCTCTTATCCGACCAAACCTTAGACATTCTTGGCTCCTACAATCAC 1429
|||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1400 CTACACTTGTTCTGTCTCTTCTCCGACCAAGCCTTAGACATTCTTGTCTCCTACAATCAC 1459
Query 1430 TCTGTAGTTCGAAGCTCCGCCACCATCCTCCGTCTCGCTAACGATCTCGCCACTTCTTCG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TCTGTAGTTCGAAGCTCCGCCACCATCCTCCGTCTCGCTAACGATCTCGCCACTTCTTCG 1519
Query 1490 G--AG----G-A--A-TTAGCGAGAGGCGACACTATGAAATCCGTACAATGTCACATGCA 1539
| || | | | ||||||||||||||||||||||||||||||||||| || | |
Sbjct 1520 GTCAGTCATGGAGGAATTAGCGAGAGGCGACACTATGAAATCCGTACAATG-CAGA-G-- 1575
Query 1540 TGAAACTGGAGCTTCGGAGGCAGAGTCACGCGCGTACATTCAAGGAATTATCGGTGTGGC 1599
| | | | || | | ||| || | | ||||||| || ||||| ||
Sbjct 1576 TCA--C-GC-GCGT---AT--AGA--CA------T---T-CAAGGAACGATTGGTGTCGC 1614
Query 1600 TTGGGATGACTTAAACATGGAGAAAAAGAGTTGTAGGCTACATCAAGGTTTCCTAGAAGC 1659
|||||||||||||||| |||||||| |||||||| | | |||||| ||||| |||||||
Sbjct 1615 TTGGGATGACTTAAACTTGGAGAAATGGAGTTGTAAGTTGCATCAAAGTTTCGTAGAAGC 1674
Query 1660 TGCGGCTAATCTTGGACGTGTGGCTCAGTGCGTTTATCAGTACGGTGATGGCCATGGCTG 1719
||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1675 TGCGGTTAATCTTGGACGTGTGGCTCAATGTGTTTATCAGTACGGTGATGGCCATGGCTG 1734
Query 1720 TCCTGACAAGGCTAAGACCGTCAATCATGTCCGGTCCTTGCTCGTCCACCCTCTTCCACT 1779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1735 TCCTGACAAGGCTAAGACCGTCAATCATGTCCGGTCCTTGCTCGTCCACCCTGTTCCACT 1794
Query 1780 CAATTAA 1786
|||||||
Sbjct 1795 CAATTAA 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5