BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16745.2
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493201 jgi|Araly1|493201|fgenesh2_kg.7__2634__AT4G16745.1 2691 0.0
> Ahg493201 jgi|Araly1|493201|fgenesh2_kg.7__2634__AT4G16745.1
Length=1873
Score = 2691 bits (1457), Expect = 0.0
Identities = 1664/1763 (94%), Gaps = 17/1763 (1%)
Strand=Plus/Plus
Query 28 CTCTGGATCGAGAAATCTCCGATCCATTCTTCTCCGTCTGCCAAAATCCCCACTTCACGA 87
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 CTCTGGATCGAGAAATCTCCGATCCATTCTTCTCCGTCAGCCAAAATTCCCACTTCACGA 60
Query 88 ATCGCAAAAGATCAAGGTTTATTGATCTATTGCGAAATTAGGGTTTGTGAATTCGAATCG 147
||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 61 ATCGC-AAAGATCAAGGTGTATTGATCTATTGCGAAATTAGGGTTTGTGAATTTGAGTCG 119
Query 148 GAGATTAATA--ATAGATTTTGTGATGGAGTGTTCATCACGCATAGAAGAATCTTGATTT 205
|||||||||| ||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 120 GAGATTAATAGCATA-A-TTTGTGATGGAGTGCTCATCACGCATAGAAGAATTTTGATTT 177
Query 206 CGATCTCGATGAAATTAGGAATCGAGGGATTTTATTTATAATTGAGATGGTGAATATTAA 265
|||||||||||||||||||||| ||||| |||||||||| | ||||||||||||| ||
Sbjct 178 CGATCTCGATGAAATTAGGAATTGAGGGGTTTTATTTAT-A---AGATGGTGAATATCAA 233
Query 266 AAGCCCTTTACGGCTATTCATAGAGGAGTCGATTAAGGAATTAATTAGGGGTTTCAGGAG 325
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 AAGCCCTTTGCGGCTATTCATAGAGGATTCGATTAAGGAATTAATTAGGGGTTTCAGGAG 293
Query 326 ACAAAGGATCAAATGGAGAAATGCGTTTCTTCTTGGTTCTATAATGACTACCATTGTTGT 385
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 294 ACAAAGGATCAAATGGAGAAATGCGTTTCTTCTTGGTTCTATAATGACCACCATTGTTGT 353
Query 386 TCTGCTTCATACACCAACGTTTTCAGTCTTCTCTGATGAAGAAGAAACCGAGTCTTCTTC 445
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 354 TCTGCTTCATACACCGACGTTTTCAGTCTTCTCTGATGAAGAAGAAACCGAG------TC 407
Query 446 TTCTTCGCCTATTTACTTGAATGGTTCTCTGCATTTGAATATCCATATTGTTAGTAGTGA 505
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 408 TTCTTCGCCTATTTATTTGAATGGTTCTCTGCATTTGAATATCCAAATTGTTAGTAGTGA 467
Query 506 AGCAAAAGTTGAAAATTTTCATACTCTTAGAACAAGAACTCCTATTGTGCAATTGAATGC 565
||||||||||||||| | ||| |||||||||||||||| ||||| || |||||||||||
Sbjct 468 TGCAAAAGTTGAAAATCTCCATGCTCTTAGAACAAGAACACCTATAGTACAATTGAATGC 527
Query 566 TTCTGAAGCAAGT-GAAGCTGTTCTTTCGagaaaaaggcgaaaaaggaagaaaagaaaga 624
|||||| |||||| ||| | ||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 528 TTCTGAGGCAAGTGGAA-CCGTTATTTTGAGGAAAAGGCGAAAAAGGAAGAAAAGAAAGA 586
Query 625 agacaaaagaTGATCTGATTCTCACTGATCCTCCACCAGCACCACGACATGTTCTATCTT 684
|||| ||||| || ||||||||| |||||||||||||||||| || || |||||||||||
Sbjct 587 AGACGAAAGACGAACTGATTCTCCCTGATCCTCCACCAGCACAACCACGTGTTCTATCTT 646
Query 685 CCTCAGAGAGACGTGCTCTTTCCTTGCCACCGAAGAAAGCTCTTACTTATGCAAAACTGG 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 CCTCAGAGAGACGTGCTCTTTCCTTGCCACCGAAGAAAGCTCTTACTTATGCAAAACTCG 706
Query 745 AGATTCAGCGTGCCCCGGAGGTCATAAATGATACAGATCTGTTTGCCCCATTGTTTCGAA 804
|||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||
Sbjct 707 AGATTCAGCGTGCCCCGGAGATCATAAATGATACGGATCTGTTTGCTCCATTGTTTAGAA 766
Query 805 ATCTCTCTGTTTTCAAAAGGAGCTATGAGCTTATGGAACTAATACTAAAGGTCTACATAT 864
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 767 ATCTCTCTGTTTTCAAAAGGAGCTATGAGCTTATGGAACTAATACTGAAGGTCTACATAT 826
Query 865 ATCCTGACGGAGACAAACCCATCTTCCACGAACCGCATTTAAATGGTATATATGCTTCAG 924
|||| |||||||| ||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 827 ATCCCGACGGAGAAAAACCCATCTTCCACCAACCGCATTTGAACGGTATATATGCTTCAG 886
Query 925 AAGGTTGGTTTATGAAGCTAATGGAGTCAAACAAACAGTTTGTCACAAAGAACCCTGAGA 984
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 887 AAGGTTGGTTTATGAAGCTAATGGAGTCAAACACACAGTTTGTCACAAAGAACCCTGAGA 946
Query 985 GGGCTCACTTGTTCTACATGCCATATAGTGTGAAACAGCTTCAGAAAAGTATCTTTGTTC 1044
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 947 AGGCTCACTTGTTCTACATGCCATATAGTGTGAAGCAGCTTCAGACAAGTATCTTTGTCC 1006
Query 1045 CTGGATCACATAACATCAAACCTTTATCGATCTTTCTTAGAGACTACGTCAACATGCTCT 1104
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1007 CTGGATCACATAACATTAAACCTTTGTCGATCTTTCTTAGAGACTACGTCAACATGCTCT 1066
Query 1105 CCATCAAATACCCCTTCTGGAACCGCACTCATGGGTCAGATCATTTCCTTGTCGCTTGCC 1164
||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1067 CCACCAAATACCCTTTCTGGAACCGCACTCACGGATCAGATCATTTCCTTGTCGCTTGCC 1126
Query 1165 ACGATTGGGGTCCTTACACAGTGAACGAGCACCCAGAGCTAAAACGAAACGCTATTAAAG 1224
| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct 1127 ATGATTGGGGTCCTTACACAGTGAACGAGCATCCAGAGCTAAGACGAAACACTATTAAAG 1186
Query 1225 CTCTCTGCAATGCAGACTTATCAGATGGAATCTTCGTCCCGGGGAAAGACGTTTCTCTCC 1284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1187 CTCTCTGCAATGCAGACTTATCAGACGGAATCTTCGTCCCGGGGAAAGACGTTTCTCTCC 1246
Query 1285 CTGAAACATCCATAAGAAACGCAGGTAGACCACTACGCAACATAGGAAACGGAAACAGAG 1344
| |||||||||||||||||||| || | |||||| |||||||| ||||||||||||||||
Sbjct 1247 CGGAAACATCCATAAGAAACGCCGGGAAACCACTCCGCAACATCGGAAACGGAAACAGAG 1306
Query 1345 TTTCTCAACGTCCCATCCTCGCTTTCTTCGCTGGAAACCTCCACGGTCGTGTCCGTCCAA 1404
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1307 TTTCTCAACGTCCCATCCTCGCTTTCTTCGCTGGAAACCCCCACGGTCGTGTCCGACCAA 1366
Query 1405 AGCTTCTAAAACACTGGAGAAACAAAGACGAGGACATGAAAATCTACGGTCCGCTTCCAC 1464
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1367 AGCTTCTAAAACACTGGAGAAACAAAGACGATGACATGAAAATCTACGGTCCGCTTCCAC 1426
Query 1465 ACAACGTAGCTAGGAAAATGACTTACGTACAACACATGAAATCAAGCAAGTACTGTCTTT 1524
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1427 ACAACGTAGCTAGGAAAATGACTTACGTACAACACATGAAATCAAGCAAATACTGTCTTT 1486
Query 1525 GTCCAATGGGTTACGAAGTGAACAGTCCACGTATCGTTGAAGCTATATACTATGAATGCG 1584
||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || |
Sbjct 1487 GTCCAATGGGTTACGAAGTGAACAGTCCACGAATCGTTGAGGCTATATACTACGAGTGTG 1546
Query 1585 TCCCTGTAGTGATCGCTGATAACTTCATGTTACCGTTCAGCGATGTGCTAGATTGGTCAG 1644
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1547 TCCCCGTAGTGATCGCTGATAACTTCATGTTACCGTTCAGCGATGTGCTGGATTGGTCAG 1606
Query 1645 CGTTCTCAGTGGTTGTACCGGAGAAGGAGATTCCACGGCTGAAGGAGATACTATTGGAGA 1704
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CGTTCTCAGTGGTTGTGCCGGAGAAGGAGATTCCACGGCTGAAGGAGATACTATTGGAGA 1666
Query 1705 TTCCTATGAGGAGATATTTGAAGATGCAGAGTAACGTGAAGATGGTTCAGAGACATTTCT 1764
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 TTCCTATGAGGAGATATCTGAAGATGCAGAGTAACGTGAAGATGGTTCAGAGACATTTCT 1726
Query 1765 TGTGGAGCCCTAAACCTAGAAAG 1787
|||||||||| ||||||||||||
Sbjct 1727 TGTGGAGCCCCAAACCTAGAAAG 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5