BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16750.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1 1212 0.0
Ahg482537 jgi|Araly1|482537|fgenesh2_kg.4__1597__AT2G35700.1 315 5e-85
Ahg487996 jgi|Araly1|487996|fgenesh2_kg.6__1130__AT5G11590.1 145 6e-34
> Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1
Length=834
Score = 1212 bits (656), Expect = 0.0
Identities = 786/846 (93%), Gaps = 19/846 (2%)
Strand=Plus/Plus
Query 1 TTCCTACTCTCACACTCCAAAATACCAAAA-ACAAAACA--ttt-tttttAATCTTCCCA 56
||| |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||||
Sbjct 1 TTCATACTCTCACACTCCAAAATA-CAAAAGAAAAAACATTTTTATTTTTTATCTTCCCA 59
Query 57 CCAAtttttttCTCTTTCTCTCGTTACATTAAATTATCTTTAGATGCAAGACTCTTCCTC 116
|||| | || ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 60 CCAA---AAAT-TC--TCTCTCGTTACATTAAATT-TCTTTAGATGCAAGACTCTTCTTC 112
Query 117 TCACGAATCGCAACGTAACCTCCGGTCACCGGTGCCGGAGAAAACCGGAAAGAGTTCTAA 176
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 113 TCACGGATCACAACGTAACCTCCGGTCACCGGTGCCGGAGAGAACCGGAAAGATTTCGAA 172
Query 177 GACTAAAAATGAGCAAAAAGGTGTTTCTAAACAACCAAATTTTCGTGGGGTCAGAATGAG 236
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 173 GACTAACAATGAGCAAAAAGGTGTTTCTAAGCAACCAAACTTTCGTGGGGTCAGAATGAG 232
Query 237 ACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATATGGCT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 ACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATCTGGCT 292
Query 297 CGGTACTTTCTCTACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCAT 356
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CGGCACTTTCTCAACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCAT 352
Query 357 CAAAGGTGGCTCTGCCCACCTTAATTTCCCGGAGCTAGCTTACCATTTGCCGAGACCGGC 416
||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 353 CAAGGGCGGCTCTGCTCACCTTAATTTCCCGGAGCTCGCTTACCATTTGCCGAGACCGGC 412
Query 417 TAGCGCGGACCCTAAAGACATTCAAGAAGCCGCCGCCGCAGCAGCTGCCGTTGACTGGAA 476
||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 413 AAGCGCCGACCCTAAAGATATTCAAGAAGCAGCCGCAGCAGCAGCTGCCGTGGACTGGAA 472
Query 477 AGCACCGGAGTCTCCGTCTAGCACCGTGACGTCATCTCCAGTCGCCGACGACGCTTTCTC 536
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 473 AGCACCGGAGTCTCCGTCTAGCACCGTGACGTCATCTCCAGTCGCTGACGACGCTTTTTC 532
Query 537 CGATCTTCCTGATCTTTTGCTTGACGTGAATGATCACAACAAAAACGATGGATTCTGGGA 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGATCTCCCTGATCTTTTGCTTGACGTGAATGATCACAACAAAAACGATGGATTCTGGGA 592
Query 597 CTCGTTTCCGTACGAAGATCCTTTCTTCTTGGAAAATTACTAGAAGGCAAATTCTTGCCG 656
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 CTCGTTTCCGTACGAAGATCCTTTCTTCTTGGAAAATTATTAGAAGGCAAATTCTTGCCA 652
Query 657 GCGAACGGATTTTCCGGTGGTTT-CCCGGTAAATAAGAAGACGATGTCGTTTTGTACCTT 715
||||| | |||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 653 GCGAATGAATTTTCTGGTGGTTTTCCCGGTAAATAAGAAGACGATGTCGTTTTGCACCTT 712
Query 716 TTTTGTCTAC-GATGGGAAATTTCttttttttttACGTGTGAGTAAAA-GTTTCCGAATG 773
|||||||| | | |||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 713 TTTTGTCT-CTGTTGGGAAATTTCTTTTTGT---ACGTGTGAGTAAAAAGTTTCCGAATG 768
Query 774 TGTGATGTGTAAGTAAGTACAGGTTATTTAATTTCttttttttGTACAAATACGTACGTC 833
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 TGTGATGTGTAAGTAAGTACAGGTTATTTAATTTCTTTTTTTTGTATAAATACGTACGTA 828
Query 834 ATTACC 839
||||||
Sbjct 829 ATTACC 834
> Ahg482537 jgi|Araly1|482537|fgenesh2_kg.4__1597__AT2G35700.1
Length=570
Score = 315 bits (170), Expect = 5e-85
Identities = 243/278 (87%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 192 AAAAGG-TGTTTCTAAA-CAACCAAATTTTCGTGGGGTCAGAATGAGACAATGGGGAAAA 249
|||||| |||||| ||| || |||| ||| || || || |||||||||||||||||||||
Sbjct 104 AAAAGGTTGTTTC-AAAGCATCCAACTTTCCGAGGTGTAAGAATGAGACAATGGGGAAAA 162
Query 250 TGGGTGTCTGAAATTAGAGAACCAA-GAAAGAAATCAAGAATATGGCTCGGTACTTTCTC 308
|||||||| ||||| ||||| |||| ||| |||||||||||| |||||||||||||||||
Sbjct 163 TGGGTGTCCGAAATCAGAGAGCCAAAGAA-GAAATCAAGAATCTGGCTCGGTACTTTCTC 221
Query 309 TACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCATCAAAGGTGGCTC 368
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 222 CACGGCGGAGATGGCGGCGCGTGCTCACGACGTGGCGGCTTTAGCCATCAAAGGCGGTTC 281
Query 369 TGCCCACCTTAATTTCCCGGAGCTAGCTTACCATTTGCCGAGACCGGCTAGCGCGGACCC 428
||| ||||| || ||||||||||| |||||||| | || ||||| ||||| || |||||
Sbjct 282 TGCACACCTCAACTTCCCGGAGCTCGCTTACCACCTCCCTAGACCAGCTAGTGCCGACCC 341
Query 429 TAAAGACATTCAAGAAGCCGCCGCCGCAGCAGCTGCCG 466
||||||||| |||| |||||||||||||| |||||||
Sbjct 342 TAAAGACATCCAAGCTGCCGCCGCCGCAGCTGCTGCCG 379
> Ahg487996 jgi|Araly1|487996|fgenesh2_kg.6__1130__AT5G11590.1
Length=1022
Score = 145 bits (78), Expect = 6e-34
Identities = 135/162 (83%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 204 TAAACAACCAAATTT-TCGTGGGGTCAGAATGA-GACAATGGGGAAAATGGGTGTCTGAA 261
||||| ||| | ||| ||||| || ||||||| || | ||||||||||||||||| ||
Sbjct 300 TAAAC-ACCCAGTTTACCGTGGAGTAAGAATGAGGA-ACTGGGGAAAATGGGTGTCGGAG 357
Query 262 ATTAGAGAACCAAGAAAGAAATCAAGAATATGGCTCGGTACTTTCTCTACGCCGGAGATG 321
||| | || || || ||||||||| | || |||||||| |||||| | ||||||||||||
Sbjct 358 ATTCGTGAGCCGAGGAAGAAATCACGTATTTGGCTCGGAACTTTCCCGACGCCGGAGATG 417
Query 322 GCGGCGCGTGCACACGACGTGGCGGCTTT-AGCCATCAAAGG 362
||||||||||||||||||||||||||| | ||| || |||||
Sbjct 418 GCGGCGCGTGCACACGACGTGGCGGCTCTGAGC-ATAAAAGG 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5