BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16760.1
Length=2467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493199 jgi|Araly1|493199|fgenesh2_kg.7__2632__AT4G16760.1 3805 0.0
Ahg934192 jgi|Araly1|934192|scaffold_402180.1 1792 0.0
Ahg918666 jgi|Araly1|918666|Al_scaffold_0575_1 998 0.0
> Ahg493199 jgi|Araly1|493199|fgenesh2_kg.7__2632__AT4G16760.1
Length=2415
Score = 3805 bits (2060), Expect = 0.0
Identities = 2318/2438 (95%), Gaps = 36/2438 (1%)
Strand=Plus/Plus
Query 12 AAAAGCTTAATTGTTCTTCCAACTACTCTGCAATTAAATCGGTAGAGTGAGGCATTGTCC 71
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 AAAAGCTTAATTTTTCTCCCAACTACTCTGCAATTAAATCGGTAGAGTGAGACATTGGCC 60
Query 72 TTCTTTTTCTCCCTCTGtttt-t-tttttttttttttCCTATCATCTCTGAGAGTTTTCT 129
|| ||||||| ||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 61 ATCGTTTTCTCGCTCTGTTTTCTGGGCTTGTTTTTTTCCTATCATCTCTGAGAGTTTTCT 120
Query 130 CGAGAAA-CTTTTGAGTGTTTAGCTACTAGATTCTGAA-TTACGAATC-ATGGAAGGAAT 186
|| |||| |||| |||||||||||||| |||| |||| ||||||||| ||||||||| |
Sbjct 121 CGGGAAAGTTTTTTAGTGTTTAGCTACTGGATTTTGAATTTACGAATCAATGGAAGGAGT 180
Query 187 TGATCACCTCGCCGATGAGAGAAACAAAGCAGAGTTCGACGTTGAGGATATGAAGATCGT 246
||||||||| || |||||||| ||||| || ||||||||||| ||||| |||||||||||
Sbjct 181 TGATCACCTTGCTGATGAGAGGAACAAGGCGGAGTTCGACGTCGAGGAGATGAAGATCGT 240
Query 247 CTGGGCTGGTTCCCGCCACGCTTTTGAGGTTTCCGATCGAATTGCCCGCCTTGTCGCCAG 306
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 CTGGGCTGGTTCCCGCCACGCTTTTGAGGTTTCCGATCGAATTGCCCGTCTCGTCGCCAG 300
Query 307 CGATCCGGTATTTGAGAAAAGCAATCGAGCTCGGTTGAGTAGGAAGGAGCTGTTTAAGAG 366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 CGATCCGGTATTTGAGAAAAGCAATAGAGCTCGGTTGAGTAGGAAGGAGCTGTTTAAGAG 360
Query 367 TACGTTGAGAAAATGTGCCCATGCGTTTAAAAGGATTATCGAGCTTCGTCTCAATGAGGA 426
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 361 TACGTTGAGAAAATGTGCTCATGCCTTTAAGAGGATTATCGAGCTTCGTCTCACTGAGGA 420
Query 427 AGAAGCAGGAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGGG 486
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 421 AGAAGCAGGAAGATTGAGGCACTTTATCGATCAGCCTGCCTATGTGGATCTGCATTGGGG 480
Query 487 AATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGAAGTGGTTGTC 546
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 AATGTTTGTGCCTGCTATTAAGGGGCAGGGCACAGAGGAGCAGCAGAAGAAGTGGTTGTC 540
Query 547 GCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCACAGACTGAGCTTGGTCATGGCTC 606
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTGGCGAATAAGATGCAGATTATTGGGTGTTATGCACAGACTGAGCTTGGTCATGGCTC 600
Query 607 AAATGTTCAAGGACTTGAGACAACTGCCACATTTGATCCCAAGACTGATGAGTTTGTAAT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAATGTTCAAGGACTTGAGACAACTGCCACATTTGATCCCAAGACTGATGAGTTTGTAAT 660
Query 667 TCACACTCCAACTCAGACTGCATCCAAATGGTGGCCTGGTGGTTTGGGAAAAGTTTCTAC 726
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCATACTCCAACTCAGACTGCATCCAAATGGTGGCCTGGTGGTTTGGGAAAAGTTTCTAC 720
Query 727 TCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATGGATT 786
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 CCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTATGGTATCCATGGATT 780
Query 787 CATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCTCTTCCGAATATAACTGTTGGTGA 846
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 CATCGTGCAACTGCGCAGCTTAGAAGACCATTCTCCTCTTCCGAATATAACTGTTGGTGA 840
Query 847 TATCGGGACAAAGATGGGAAATGGAGCATATAATTCAATGGACAACGGGTTTCTTATGTT 906
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TATCGGGACGAAGATGGGAAATGGAGCATATAATTCAATGGACAACGGGTTTCTTATGTT 900
Query 907 TGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGGCTGTCAAAAGTTACAAGAGA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGGCTGTCAAAAGTTACAAGGGA 960
Query 967 AGGAGAATATGTTCCATCGGATGTTCCAAAGCAGCTGGTATATGGTACTATGGTGTATGT 1026
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGAAAATATGTTCCATCGGATGTTCCAAAGCAGCTGGTATATGGTACTATGGTGTATGT 1020
Query 1027 GAGACAAACAATTGTGGCTGATGCTTCCAATGCACTATCTCGAGCAGTTTGCATAGCTAC 1086
||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 GAGACAAGCAATTGTGGCAGATGCTTCCATTGCACTATCTCGAGCAGTTTGCATAGCTAC 1080
Query 1087 AAGATACAGTGCAGTGCGGAGGCAATTTGGCGCACATAATGGTGGCATTGAGACACAGGT 1146
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGGTACAGCGCAGTGCGGAGGCAGTTTGGCGCACATAATGGTGGCATTGAGACACAGGT 1140
Query 1147 GATTGATTATAAAACTCAGCAGAACAGGCTATTTCCTCTGCTAGCATCTGCATATGCATT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATTGATTATAAAACTCAGCAGAACAGGCTATTTCCTCTGCTAGCATCTGCATATGCATT 1200
Query 1207 TCGATTTGTTGGAGAGTGGCTAAAATGGCTGTACACGGATGTAACTGAAAGACTGGCGGC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCGATTTGTTGGAGAGTGGCTAAAATGGCTGTACACGGATGTAACTGAAAGACTGGCGGC 1260
Query 1267 TAGTGATTTCGCAACTTTGCCTGAGGCTCATGCATGCACTGCAGGATTGAAGTCTCTCAC 1326
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 TAGTGATTTCGCAACTTTGCCTGAGGCTCATGCATGCACTGCAGGGTTGAAGTCTCTCAC 1320
Query 1327 CACCACAGCCACTGCGGATGGCATTGAAGAATGTCGTAAGTTATGTGGTGGACATGGATA 1386
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 1321 CACCACAGCCACTGCGGATGCCATTGAAGAATGTCGTAAGTTATGTGGTGGACACGGCTA 1380
Query 1387 CTTGTGGTGCAGTGGGCTCCCCGAGCTGTTTGCTGTATATGTTCCTGCCTGCACATACGA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTTGTGGTGCAGTGGGCTCCCCGAGCTGTTTGCTGTATATGTTCCTGCCTGCACATACGA 1440
Query 1447 AGGAGACAATGTTGTGCTGCAATTACAGGTTGCTCGATTCCTCATGAAGACAGTCGCCCA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGGAGACAATGTTGTGCTGCAATTACAGGTTGCTCGATTCCTCATGAAGACAGTCGCCCA 1500
Query 1507 GCTGGGATCTGGAAAGGTTCCTGTTGGCACAACTGCTTATATGGGCCGGGCAGCACATCT 1566
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1501 GCTGGGATCTGGAAAGGTTCCTGTTGGCACAACTGCTTATATGGGCCGGGCCGCACATCT 1560
Query 1567 TTTGCAATGTCGTTCTGGTGTTCAAAAGGCTGAGGATTGGTTAAACCCTGATGTTGTACT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1561 TTTGCAATGTCGTTCTGGTGTTCAAAAGGCTGAGGATTGGTTAAACCCTGATGCGGTACT 1620
Query 1627 GGAAGCTTTCGAAGCTAGGGCTCTCAGAATGGCTGTTACGTGTGCCAAAAATCTCAGCAA 1686
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1621 GGAAGCTTTCGAAGCTAGGGCTCTGAGAATGGCTGTTACTTGTGCCAAAAATCTCAGCAA 1680
Query 1687 GTTTGAGAATCAGGAACAAGGATTCCAAGAGCTCTTGGCTGATTTGGTTGAGGCCGCTAT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GTTTGAGAATCAGGAACAAGGATTCCAAGAGCTCTTGGCTGATTTGGTTGAGGCCGCTAT 1740
Query 1747 TGCTCATTGCCAATTGATTGTTGTTTCCAAGTTCATAGCGAAACTGGAGCAAGACATAGG 1806
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1741 TGCTCATTGCCAATTGATTGTTGTTTCCAAGTTCATAGCGAAACTAGAGCAGGACATAGG 1800
Query 1807 TGGCAAAGGAGTGAAGAAACAGCTGAATAATCTGTGTTACATTTATGCTCTTTATCTCCT 1866
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1801 AGGCAAAGGAGTGAAGAAACAGCTGAATAATCTGTGTTACATTTACGCGCTTTATCTCCT 1860
Query 1867 CCACAAACATCTCGGCGATTTCCTCTCCACTAACTGCATCACTCCCAAACAAGCCTCTCT 1926
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1861 TCACAAACATCTCGGTGATTTCCTCTCCACTAACTCCATCACTCCCAAACAAGCCTCTCT 1920
Query 1927 TGCTAACGACCAGCTCCGTTCCTTATACACTCAGGTCCGGCCTAATGCGGTTGCACTTGT 1986
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1921 TGCTAACGACCAGCTCCGTTCCTTATACTCTCAGGTCCGTCCTAATGCGGTTGCACTTGT 1980
Query 1987 GGACGCCTTCAATTACACCGACCATTACTTGAACTCGGTTCTTGGCCGTTACGACGGTAA 2046
|||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||
Sbjct 1981 GGACGCCTTCAATTACACAGACCATTACTTGAACTCGGTGCTGGGCCGTTATGACGGTAA 2040
Query 2047 TGTGTACCCAAAGCTCTTTGAGGAAGCGTTGAAGGATCCATTGAACGACTCGGTGGTTCC 2106
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2041 TGTGTACCCAAAGCTCTTTGAGGAAGCGTGGAAGGATCCATTGAACGACTCGGTGGTTCC 2100
Query 2107 TGATGGGTACCAAGAATACCTTCGACCTGTGCTTCAGCAGCAACTTCGTACCGCTAGGCT 2166
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2101 TGATGGGTACCATGAATACCTTCGACCTGTGCTTAAGCAGCAACTTCGTACCGCTAGGCT 2160
Query 2167 CTGAAGAGTTTTCTTTGCTTGATACTCGATATGGTTAATCACATTAGACTTGcttcgtcc 2226
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 2161 CTGAAGAGTTTTCTT-GCTTGATACTCGATATGGTTAATCACATTTGACTTGCTTC-T-- 2216
Query 2227 ttcttcttcgtcttcttcttcttctCGCTTTGAATAAT-TTCGCAGTTTAAAAACTGGCG 2285
| ||||||| | | || | ||||||||||| || ||||||||||||||||||
Sbjct 2217 T-CTTCTTC-T-T-CT-C--------GCTTTGAATAAAGTT-GCAGTTTAAAAACTGGCG 2262
Query 2286 ATGCCCTTATTTATATGTAGCAATGTAATAGTTAATGTACGATCGTCATATGGCGGAATT 2345
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 2263 ATGCCCTTATTTATATGTAGCAATGTAATAGTTAATGTACGGTCGTCTTATGGCGGCATG 2322
Query 2346 TTAGTACTATTTTTCGTTTTCAATGCAACATTAATACAATTGATCGTTT---CT----AC 2398
||||||||||||||||| |||||||||||||||||| |||||||||||| || ||
Sbjct 2323 TTAGTACTATTTTTCGTATTCAATGCAACATTAATAAAATTGATCGTTTTTACTTTCTAC 2382
Query 2399 TCTGAGAAGGATATGTGGGATATTTGTAATCTTCGTAT 2436
||||||||||||| |||||||||||||||||||
Sbjct 2383 TCTGAGAAGGATAC-----ATATTTGTAATCTTCGTAT 2415
> Ahg934192 jgi|Araly1|934192|scaffold_402180.1
Length=2036
Score = 1792 bits (970), Expect = 0.0
Identities = 1658/1989 (83%), Gaps = 52/1989 (3%)
Strand=Plus/Plus
Query 171 GAATCATGGAAG-GAATTGATCACCTCGCCGATGAGAGAAACAAAGCAGAGTTCGACGTT 229
|||| |||| || || |||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 17 GAATAATGG-AGAGAGTTGATCACCTTGCTGATGAGAGGAACAAAGCTGAGTTCAACGTC 75
Query 230 GAGGATATGAAGATCGTCTGGGCTGGTTCCCGCCACGCTTTTGAGGTTTCCGATCGAATT 289
|| |||||||||||||||||||| ||||||||||||||||| || ||||| |||| |||
Sbjct 76 GACGATATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGACGTTTCAAATCGCATT 135
Query 290 GCCCGCCTTGTCGCCAGCGATCCGGTATTTGAGAAAAGCAATCGAGCTCGGT--TGAGTA 347
| ||||| ||||||| |||||| | |||||||||||||| ||| | || |||| |
Sbjct 136 TCTCGCCTCGTCGCCAATGATCCGATCTTTGAGAAAAGCAAAAGAG--CAGTAATGAGAA 193
Query 348 GGAAGGAGCTGTTTAAGAGTACGTTGAGAAAATGTGCCCATGCGTT-TAAAAGGATTATC 406
|||| ||| | || |||| |||||||||||| ||| || || || || | ||||| |
Sbjct 194 GGAAAGAGTTATTCAAGAACACGTTGAGAAAAAGTGTTCACGC-TTGGAAGATGATTAAC 252
Query 407 GAGCTTCGTCTCAATGAGGAAGAA-GCAGGAAGATTGAGGCA-CTTT-ATCGACCAGCC- 462
|||||||||||| ||| || ||| | | || ||| | | | |||| || || || ||
Sbjct 253 GAGCTTCGTCTCTCTGATGAGGAAGGAATCAA-ATT-AAG-ATCTTTCATGGATCAACCA 309
Query 463 TGCCTATGTGGATCTGCACTGGGGAATGTTTGTGCCTGCTA-TTAAGGGGCAGGGTACAG 521
|| | | |||||||||| |||||||||||||||||||| | |||| || || || ||||
Sbjct 310 GGCTTCT-TGGATCTGCATTGGGGAATGTTTGTGCCTGC-ACTTAAAGGACAAGGCACAG 367
Query 522 AGGAGCAGCAGA-AGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTAT 580
| || ||||| | | ||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 368 AAGAACAGCA-ACACAAGTGGTTGTCTCTAGCTAATAAGATGCAGATAATTGGATGTTAT 426
Query 581 GCACAGACTGAGCTTGGTCATGGCTCAAATGTTCAAGGACTTGAGACAACTGCCACATTT 640
|| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 427 GCTCAAACTGAGCTTGGTCATGGCTCTAATGTTCAAGGACTTGAGACAACCGCCAC-TTT 485
Query 641 -GATCCCAAGACTGATGAGTTTGTAATTCACACTCCAACTCAGAC-TGCATCCAAATGGT 698
||||| ||||| || ||||| | ||||||| |||||||||||| | |||| |||||||
Sbjct 486 CGATCCAAAGACAGACCAGTTTATCATTCACAGTCCAACTCAGACAT-CATCTAAATGGT 544
Query 699 GGCCTGGTGGTTTGGGAAAAGTTTCTACTCATGCTGTTGTTTACGCTCGTCTCATAACTA 758
|||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 545 GGCCTGGTGGACTAGGAAAAGTTTCTACTCATGCTGTTGTTTATGCTCGTCTAATAACCA 604
Query 759 ACGGAAAAGACTACGGTATCCATGGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATT 818
| || |||||| | ||| ||||||||||||||||||| ||||| || || || |||||||
Sbjct 605 ATGGCAAAGACCATGGTGTCCATGGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATT 664
Query 819 CTCCTCTTCCGA-ATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATAT 877
|||| ||||| | |||||| |||||||||||||| | ||| | ||||| || ||||||
Sbjct 665 CTCCGCTTCC-AGGTATAACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATAT 723
Query 878 AATTCAATGGACAACGGGTTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATG 937
|| ||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 724 AACTCAATGGACAATGGTTTTCTTATGTTTGATCATTTTCGTATTCCTAGAGATCAAATG 783
Query 938 CTCATGAGGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAG 997
|||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||| |
Sbjct 784 CTCATGAGACTGTCAAAAGTTACAAGAGAAGGAAAATATGTAGCATCAGATGTTCCAAGG 843
Query 998 CAGCTGGTATATGGTACTATGGTGTATGTGAGACAAACAATTGTGGCTGATGCTTCCAAT 1057
|| |||| |||||||||||||||||||||||||| | |||||| | |||||||||
Sbjct 844 CAATTGGTGTATGGTACTATGGTGTATGTGAGACAGTCTATTGTGTCAAATGCTTCCACC 903
Query 1058 GCACTATCTCGAGCAGTTTGCATAGCTACAAGATACAGTGCAGTGCGGAGGCAATTTGGC 1117
|| || |||| || || ||||| |||||||| |||||||| || || ||||| ||||||
Sbjct 904 GCGCTGGCTCGGGCGGTCTGCATTGCTACAAGGTACAGTGCTGTTCGAAGGCAGTTTGGC 963
Query 1118 GCACATAATGGTGGCATTGAGACACAGGTGATTGATTATAAAACTCAGCAGAACAGGCTA 1177
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 964 TCACAGGATGGTGGAATTGAGACACAGGTGATTGATTATAAAACACAGCAGAACAGATTG 1023
Query 1178 TTTCCTCTGCTAGCATCTGCATATGCATTTCGATTTGTTGGAGAGTGGCTAAAATGGCTG 1237
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1024 TTTCCTCTGCTAGCATCTGCATATGCATTTCGATTTGTAGGGGAGTGGCTGAAATGGCTC 1083
Query 1238 TACACGGATGTAACTGAAAGACT-GGCGGCTAGTGATTTCGCAACTTTGCCTGAGGCTCA 1296
||||| |||||||| ||||||| | | | |||||||||||||| |||||||| |||||
Sbjct 1084 TACACTGATGTAACAAAAAGACTAGAC-ACCAGTGATTTCGCAACATTGCCTGAAGCTCA 1142
Query 1297 TGCATGCACTGCAGGATTGAAGTCTCTCACCACCACAGCCA-CTGCGGATGGCATTGAAG 1355
||| ||||||||||||||||||||| | || ||| |||||| || | ||||| |||||||
Sbjct 1143 TGCTTGCACTGCAGGATTGAAGTCTATGACTACCTCAGCCACCT-CTGATGGTATTGAAG 1201
Query 1356 AATGTCGTAAGTTATGTGGTGGACATGGATACTTGTGGTGCAGTGGGCTCCCCGAGCTGT 1415
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||| |||
Sbjct 1202 AATGTCGTAAGTTATGTGGTGGACATGGATACTTGTGGTGTAGTGGCCTTCCTGAGTTGT 1261
Query 1416 TTGCTGTATATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGG 1475
||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||
Sbjct 1262 TTGCTGTATATGTTCCTGCTTGCACATATGAGGGAGACAATGTTGTGTTGCAATTACAGG 1321
Query 1476 TTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTTCCTGT-TGGC 1534
||||| |||| || ||||||||||| | || |||| |||||||||| |||| | |||
Sbjct 1322 TTGCTAGATTTCTGATGAAGACAGTTTCACAATTGGGTTCTGGAAAGGCTCCT-TCTGGG 1380
Query 1535 ACAACTGCTTATATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAG 1594
|||||||||||||||||| | ||| ||| ||||||||||| ||||| ||||||| |||
Sbjct 1381 ACAACTGCTTATATGGGCAGAGCAAAACACCTTTTGCAATGCCGTTCCGGTGTTCGAAAT 1440
Query 1595 GCTGAGGATTGGTTAAACCCTG--ATGTTGTACTGGAAGCTTTCGAAGCTAGGGCTCTCA 1652
|||||||||||||||||||||| ||| ||| |||||||||| ||||| |||||| | |
Sbjct 1441 GCTGAGGATTGGTTAAACCCTGGTATGGTGT--TGGAAGCTTTTGAAGCAAGGGCTTTGA 1498
Query 1653 GAATGGCTGTTACGTGTGCCAAAAATCTCAGCAAGTTTGAGAATCAGGAACAAGGATTC- 1711
||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||
Sbjct 1499 GAATGGCTGTTACTTGTGCTAACAATCTAAGCAAGTTTGAGAATCAAGAACAAGGATTCT 1558
Query 1712 CAAGAGCTCTTGGCTGAT-TTGGTTGAGGCCGCTATTGCTCATTGCCAATTGATTGTTGT 1770
|| || |||||||||||| ||| ||||||| |||| |||||||||||| || ||||||||
Sbjct 1559 CA-GAACTCTTGGCTGATCTTG-TTGAGGCTGCTACTGCTCATTGCCAGTTAATTGTTGT 1616
Query 1771 TTCCAAGTTCATAGCGAAACTGGAGC-AAGACATAGGTGGCAAAGGAGTGAAGAAACAGC 1829
||| ||||| ||||| ||| | ||| || | || | || |||||||||||||||||||
Sbjct 1617 TTCTAAGTTTATAGCCAAAGTAGAGGGAA-ATATTGAAGGAAAAGGAGTGAAGAAACAGC 1675
Query 1830 TGAATAATCTGTGTTACATTTATGCTCTTTATCTCCTCCACAAACATCTCGGCGATTTCC 1889
| || ||||| || ||||| ||||| || |||||||| |||||||| || || |||||||
Sbjct 1676 TCAAGAATCTATGCTACATCTATGCACTCTATCTCCTTCACAAACACCTTGGTGATTTCC 1735
Query 1890 TCTCCACTAACTGCA-TCACTCCCAAACAAGCCTCTCTTGCTAAC-GACCAGCTCCGTTC 1947
|| || |||| | ||||||| |||||| ||| || || ||| | |||||| || ||
Sbjct 1736 TCAGTACAAACT-CTGTCACTCCTGAACAAGGCTCCCTCGCGAACCG-CCAGCTTCGGTC 1793
Query 1948 -CTTATACACTCAGGTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTTCAATTACACCG 2006
|| ||| ||||||| || || || || || || || ||||| ||||| | ||||| |
Sbjct 1794 ACTC-TACTCTCAGGTTCGACCAAACGCAGTGGCCCTAGTGGATGCCTTTGACTACACTG 1852
Query 2007 ACCATTA-CTTGAACTCGGTTCTTGGCCGTTACGACGGTAATGTGTACCCAAAGCTCTTT 2065
|||| || |||| ||| || || ||||| || || || || || || |||||||| |||
Sbjct 1853 ACCACTATCTTGG-CTCTGTGCTGGGCCGCTATGATGGAAACGTTTATCCAAAGCT-TTT 1910
Query 2066 -GAGGAAGCGTTGAAGGATCCATTGAACGACTCGGTGGTTCCTGATGGGTACCAAGAATA 2124
||||||||||||||||||||| | || ||||||||||||||||| || ||||| |||||
Sbjct 1911 CGAGGAAGCGTTGAAGGATCCACTCAATGACTCGGTGGTTCCTGACGGCTACCATGAATA 1970
Query 2125 CCTTCGACC 2133
| |||||||
Sbjct 1971 CATTCGACC 1979
> Ahg918666 jgi|Araly1|918666|Al_scaffold_0575_1
Length=1071
Score = 998 bits (540), Expect = 0.0
Identities = 907/1084 (84%), Gaps = 26/1084 (2%)
Strand=Plus/Plus
Query 176 ATGGAAG-GAATTGATCACCTCGCCGATGAGAGAAACAAAGCAGAGTTCGACGTTGAGGA 234
|||| || || |||||||||| || |||||||| |||||||| |||||| |||| || ||
Sbjct 1 ATGG-AGAGAGTTGATCACCTTGCTGATGAGAGGAACAAAGCTGAGTTCAACGTCGACGA 59
Query 235 TATGAAGATCGTCTGGGCTGGTTCCCGCCACGCTTTTGAGGTTTCCGATCGAATTGCCCG 294
|||||||||||||||||| ||||||||||||||||| || ||||| |||| ||| | ||
Sbjct 60 TATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGACGTTTCAAATCGCATTTCTCG 119
Query 295 CCTTGTCGCCAGCGATCCGGTATTTGAGAAAAGCAATCGAGCTCGGT--TGAGTAGGAAG 352
||| ||||||| |||||| | |||||||||||||| ||| | || |||| |||||
Sbjct 120 CCTCGTCGCCAATGATCCGATCTTTGAGAAAAGCAAAAGAG--CAGTAATGAGAAGGAAA 177
Query 353 GAGCTGTTTAAGAGTACGTTGAGAAAATGTGCCCATGCGTT-TAAAAGGATTATCGAGCT 411
||| | || |||| |||||||||||| ||| || || || || | ||||| ||||||
Sbjct 178 GAGTTATTCAAGAACACGTTGAGAAAAAGTGTTCACGC-TTGGAAGATGATTAACGAGCT 236
Query 412 TCGTCTCAATGAGGAAGAA-GCAGGAAGATTGAGGCA-CTTT-ATCGACCAGCC-TGCCT 467
||||||| ||| || ||| | | || ||| | | | |||| || || || || || |
Sbjct 237 TCGTCTCTCTGATGAGGAAGGAATCAA-ATT-AAG-ATCTTTCATGGATCAACCAGGCTT 293
Query 468 ATGTGGATCTGCACTGGGGAATGTTTGTGCCTGCTA-TTAAGGGGCAGGGTACAGAGGAG 526
| |||||||||| |||||||||||||||||||| | |||| || || || ||||| ||
Sbjct 294 CT-TGGATCTGCATTGGGGAATGTTTGTGCCTGC-ACTTAAAGGACAAGGCACAGAAGAA 351
Query 527 CAGCAGA-AGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCACA 585
||||| | | ||||||||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct 352 CAGCA-ACACAAGTGGTTGTCTCTAGCTAATAAGATGCAGATAATTGGATGTTATGCTCA 410
Query 586 GACTGAGCTTGGTCATGGCTCAAATGTTCAAGGACTTGAGACAACTGCCACATTT-GATC 644
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct 411 AACTGAGCTTGGTCATGGCTCTAATGTTCAAGGACTTGAGACAACCGCCAC-TTTCGATC 469
Query 645 CCAAGACTGATGAGTTTGTAATTCACACTCCAACTCAGAC-TGCATCCAAATGGTGGCCT 703
| ||||| || ||||| | ||||||| |||||||||||| | |||| ||||||||||||
Sbjct 470 CAAAGACAGACCAGTTTATCATTCACAGTCCAACTCAGACAT-CATCTAAATGGTGGCCT 528
Query 704 GGTGGTTTGGGAAAAGTTTCTACTCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGA 763
||||| | ||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 529 GGTGGACTAGGAAAAGTTTCTACTCATGCTGTTGTTTATGCTCGTCTAATAACCAATGGC 588
Query 764 AAAGACTACGGTATCCATGGATTCATCGTGCAACTGCGAAGCTTAGAAGATCATTCTCCT 823
|||||| | ||| ||||||||||||||||||| ||||| || || || |||||||||||
Sbjct 589 AAAGACCATGGTGTCCATGGATTCATCGTGCAGCTGCGTAGTTTGGATGATCATTCTCCG 648
Query 824 CTTCCGA-ATATAACTGTTGGTGATATCGGGACAAAGATGGGAAATGGAGCATATAATTC 882
||||| | |||||| |||||||||||||| | ||| | ||||| || |||||||| ||
Sbjct 649 CTTCC-AGGTATAACCGTTGGTGATATCGGAATGAAGTTTGGAAACGGGGCATATAACTC 707
Query 883 AATGGACAACGGGTTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCAT 942
||||||||| || |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 708 AATGGACAATGGTTTTCTTATGTTTGATCATTTTCGTATTCCTAGAGATCAAATGCTCAT 767
Query 943 GAGGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAGCAGCT 1002
||| |||||||||||||||||||||||| ||||||| |||| |||||||||| ||| |
Sbjct 768 GAGACTGTCAAAAGTTACAAGAGAAGGAAAATATGTAGCATCAGATGTTCCAAGGCAATT 827
Query 1003 GGTATATGGTACTATGGTGTATGTGAGACAAACAATTGTGGCTGATGCTTCCAATGCACT 1062
||| |||||||||||||||||||||||||| | |||||| | ||||||||| || ||
Sbjct 828 GGTGTATGGTACTATGGTGTATGTGAGACAGTCTATTGTGTCAAATGCTTCCACCGCGCT 887
Query 1063 ATCTCGAGCAGTTTGCATAGCTACAAGATACAGTGCAGTGCGGAGGCAATTTGGCGCACA 1122
|||| || || ||||| |||||||| |||||||| || || ||||| |||||| ||||
Sbjct 888 GGCTCGGGCGGTCTGCATTGCTACAAGGTACAGTGCTGTTCGAAGGCAGTTTGGCTCACA 947
Query 1123 TAATGGTGGCATTGAGACACAGGTGATTGATTATAAAACTCAGCAGAACAGGCTATTTCC 1182
||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 948 GGATGGTGGAATTGAGACACAGGTGATTGATTATAAAACACAGCAGAACAGATTGTTTCC 1007
Query 1183 TCTGCTAGCATCTGCATATGCATTTCGATTTGTTGGAGAGTGGCTAAAATGGCTGTACAC 1242
||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 1008 TCTGCTAGCATCTGCATATGCATTTCGATTTGTAGGGGAGTGGCTGAAATGGCTCTACAC 1067
Query 1243 GGAT 1246
|||
Sbjct 1068 CGAT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92978288045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5