BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G16765.1 Length=1153 Score E Sequences producing significant alignments: (Bits) Value Ahg493198 jgi|Araly1|493198|fgenesh2_kg.7__2631__AT4G16765.1 1397 0.0 > Ahg493198 jgi|Araly1|493198|fgenesh2_kg.7__2631__AT4G16765.1 Length=1015 Score = 1397 bits (756), Expect = 0.0 Identities = 938/1019 (92%), Gaps = 39/1019 (4%) Strand=Plus/Plus Query 119 GAAATGGATACGTCGCTTCTTCTTCCGATCATCGATCTTTCTTCGCCGGAAAAAATCTCC 178 ||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||| Sbjct 26 GAAATGGGGACGTCGCTTCTACTTCCGATCATCGACCTTTCTTCGCCGGGAAAAATCTCC 85 Query 179 ACTACTCAATTGATTCGTCAGG--CATGTCTTGAACATGGATTCTTCTATGTCAGGATCA 236 || |||||||||||||||||| | ||||||||||||||||||||||| | | || Sbjct 86 ACCGCTCAATTGATTCGTCAGGTTC-TGTCTTGAACATGGATTCTTCTA--T---G-TC- 137 Query 237 TGATCCGGAAGAATTAATTGGAAGGGGTTTTTAAGGAGAGCAAAGGCTTCTTTAATCTCC 296 || | | | || |||||||| ||||||||||||||||||||||||||| Sbjct 138 --AT---G--G-----A----AA-GGGTTTTTGAGGAGAGCAAAGGCTTCTTTAATCTCC 180 Query 297 CATTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCGTTGTATG 356 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 CACTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCATTGTATG 240 Query 357 CTGAGAAACTTGACCCGTCCTTGAGCTCCATAGGTGATTCCAAGGAAAGCTTCTATTTTG 416 ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 241 CTGAGAAACTTGACCCGTCTTTGAGCTCAATAGGTGATTCCAAGGAAAGTTTCTATTTTG 300 Query 417 GCTCTTTGGAAGGTGTTCTAGCTCAACGTTACCCTAACCAATGGCCTTCTGAAGGTATCT 476 | ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| Sbjct 301 GTTCTTTGGAAGGTGTTCTCGCTCAACGTTACCCAAATCAATGGCCTTCTGAAGGTATCT 360 Query 477 TGCCATCATGGAGGCAAACCATGGAAACTTACTACAAGAATGTCCTGTCCGTGGGTAGAA 536 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 361 TGCCATCATGGAGGCAAACCATGGAATGTTACTACAAGAATGTCCTGTCCGTGGGTGGAA 420 Query 537 AATTGCTTGGCTTGATTGCCTTAGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 596 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 AATTGCTCGGCTTGATTGCCTTGGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 480 Query 597 GAGCCTTGAATGATCCTACAGCAGTTGTTCGCCTCTTACGATATCCAGGTGAAGTGATTT 656 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 481 GAGCCTTGAATGATCCTGCAGCAGTTGTTCGCCTCTTACGCTATCCAGGTGAAGTGATTT 540 Query 657 CGTCAGATGTTGAAACGTATGGTGCCTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 716 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 541 CGTCAGATGTTGAAACATATGGTGCTTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 600 Query 717 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 660 Query 777 TTTGGGAAGATGTCCCTGGAATTAAAGGGGCGTTTATAGTCAACATTGGTGATATGATGG 836 |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| Sbjct 661 TTTGGGAAGATGTCCCTGCAATTAAAGGGGAGTTTATCGTCAACATTGGTGATATGATGG 720 Query 837 AGAGATGGACCAATGGATTGTTTCGGTCTACATTGCACAGAGTGATGCCGGTGGGAAAAG 896 |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 721 AGAGGTGGACCAATGGATTGTTCCGGTCTACATTGCACAGAGTGGTGCCGGTGGGAAAAG 780 Query 897 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 840 Query 957 AGAGTTGTTGCAGCGAAACTTGTCCCCCAAGATTCCCGCCTATTCTCGCCGGCGACTATA 1016 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 841 AGAGTTGTTGCAGCGAAACTTCTCCCCCAAGATTCCCGCCTATCCTCGCCGGCGACTATA 900 Query 1017 TCAAGGAGCGTTTCAGGCTAACATACGCCACTTCCTAG-TCTTATGTTTGTGACGAAATG 1075 | ||||| |||||||||||||||||||||||||| ||| | || | || || |||||||| Sbjct 901 TTAAGGAACGTTTCAGGCTAACATACGCCACTTCTTAGATGTT-T-TT-GTTACGAAATG 957 Query 1076 TAAGaaaaaaaTAGTGTTCAAACTTCTA-CGT-A-CC-A-TA-A-TGTTTAATTAGTGA 1127 |||||||||| ||||||||||| ||| | | | | || | || | |||||||||||||| Sbjct 958 TAAGAAAAAA-TAGTGTTCAAAGTTCAAACTTCAACCTACTATAATGTTTAATTAGTGA 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43002650376 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5