BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16765.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493198 jgi|Araly1|493198|fgenesh2_kg.7__2631__AT4G16765.1 1397 0.0
> Ahg493198 jgi|Araly1|493198|fgenesh2_kg.7__2631__AT4G16765.1
Length=1015
Score = 1397 bits (756), Expect = 0.0
Identities = 938/1019 (92%), Gaps = 39/1019 (4%)
Strand=Plus/Plus
Query 119 GAAATGGATACGTCGCTTCTTCTTCCGATCATCGATCTTTCTTCGCCGGAAAAAATCTCC 178
||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 26 GAAATGGGGACGTCGCTTCTACTTCCGATCATCGACCTTTCTTCGCCGGGAAAAATCTCC 85
Query 179 ACTACTCAATTGATTCGTCAGG--CATGTCTTGAACATGGATTCTTCTATGTCAGGATCA 236
|| |||||||||||||||||| | ||||||||||||||||||||||| | | ||
Sbjct 86 ACCGCTCAATTGATTCGTCAGGTTC-TGTCTTGAACATGGATTCTTCTA--T---G-TC- 137
Query 237 TGATCCGGAAGAATTAATTGGAAGGGGTTTTTAAGGAGAGCAAAGGCTTCTTTAATCTCC 296
|| | | | || |||||||| |||||||||||||||||||||||||||
Sbjct 138 --AT---G--G-----A----AA-GGGTTTTTGAGGAGAGCAAAGGCTTCTTTAATCTCC 180
Query 297 CATTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCGTTGTATG 356
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CACTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCATTGTATG 240
Query 357 CTGAGAAACTTGACCCGTCCTTGAGCTCCATAGGTGATTCCAAGGAAAGCTTCTATTTTG 416
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 241 CTGAGAAACTTGACCCGTCTTTGAGCTCAATAGGTGATTCCAAGGAAAGTTTCTATTTTG 300
Query 417 GCTCTTTGGAAGGTGTTCTAGCTCAACGTTACCCTAACCAATGGCCTTCTGAAGGTATCT 476
| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 301 GTTCTTTGGAAGGTGTTCTCGCTCAACGTTACCCAAATCAATGGCCTTCTGAAGGTATCT 360
Query 477 TGCCATCATGGAGGCAAACCATGGAAACTTACTACAAGAATGTCCTGTCCGTGGGTAGAA 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 361 TGCCATCATGGAGGCAAACCATGGAATGTTACTACAAGAATGTCCTGTCCGTGGGTGGAA 420
Query 537 AATTGCTTGGCTTGATTGCCTTAGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 596
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTGCTCGGCTTGATTGCCTTGGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 480
Query 597 GAGCCTTGAATGATCCTACAGCAGTTGTTCGCCTCTTACGATATCCAGGTGAAGTGATTT 656
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 GAGCCTTGAATGATCCTGCAGCAGTTGTTCGCCTCTTACGCTATCCAGGTGAAGTGATTT 540
Query 657 CGTCAGATGTTGAAACGTATGGTGCCTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 716
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CGTCAGATGTTGAAACATATGGTGCTTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 600
Query 717 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 660
Query 777 TTTGGGAAGATGTCCCTGGAATTAAAGGGGCGTTTATAGTCAACATTGGTGATATGATGG 836
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 661 TTTGGGAAGATGTCCCTGCAATTAAAGGGGAGTTTATCGTCAACATTGGTGATATGATGG 720
Query 837 AGAGATGGACCAATGGATTGTTTCGGTCTACATTGCACAGAGTGATGCCGGTGGGAAAAG 896
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 721 AGAGGTGGACCAATGGATTGTTCCGGTCTACATTGCACAGAGTGGTGCCGGTGGGAAAAG 780
Query 897 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 840
Query 957 AGAGTTGTTGCAGCGAAACTTGTCCCCCAAGATTCCCGCCTATTCTCGCCGGCGACTATA 1016
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AGAGTTGTTGCAGCGAAACTTCTCCCCCAAGATTCCCGCCTATCCTCGCCGGCGACTATA 900
Query 1017 TCAAGGAGCGTTTCAGGCTAACATACGCCACTTCCTAG-TCTTATGTTTGTGACGAAATG 1075
| ||||| |||||||||||||||||||||||||| ||| | || | || || ||||||||
Sbjct 901 TTAAGGAACGTTTCAGGCTAACATACGCCACTTCTTAGATGTT-T-TT-GTTACGAAATG 957
Query 1076 TAAGaaaaaaaTAGTGTTCAAACTTCTA-CGT-A-CC-A-TA-A-TGTTTAATTAGTGA 1127
|||||||||| ||||||||||| ||| | | | | || | || | ||||||||||||||
Sbjct 958 TAAGAAAAAA-TAGTGTTCAAAGTTCAAACTTCAACCTACTATAATGTTTAATTAGTGA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5