BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16770.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493196 jgi|Araly1|493196|fgenesh2_kg.7__2629__AT4G16770.1 1509 0.0
> Ahg493196 jgi|Araly1|493196|fgenesh2_kg.7__2629__AT4G16770.1
Length=1074
Score = 1509 bits (817), Expect = 0.0
Identities = 912/958 (95%), Gaps = 5/958 (1%)
Strand=Plus/Plus
Query 34 AATGGGAACAGCTCTGAAACTTCCGATCATCGATCTTTCTTCGCCGGAGAAGCTCTCTAC 93
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AATGGGAACAGCTCTGAAACTTCCAATCATCGATCTTTCTTCGCCGGAGAAGCTCTCTAC 60
Query 94 TTCCCGATTGATTCGTCAGGCTTGCTTGGATCATGGATTCTTCTATCTTACGAACCATGG 153
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 61 TTCCCGATTGATTCGTCAGGCTTGCTTGGATCATGGATTCTTCTATCTTACAAATCATGG 120
Query 154 CGTTTCGGAAGAGTTGATGGAAGGAGTGTTAATAGAGAGCAAGAAACTATTCTCCCTTCC 213
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 121 TGTTTCGAAAGAGATGATGGAAGGAGTGTTAATGGAGAGCAAGAAACTATTCTCTCTTCC 180
Query 214 TCTTGATGAGAAGATGGTGATGGCTCGTCATGGTTTTCGTGGTTACTCACCGTTATACGA 273
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 CCTTGATGAGAAGATGGTGATGGCTCGTCGTGGTTTTCGTGGCTACTCACCGTTATACGA 240
Query 274 CGAGAAACTTGAATCATCTTCCACCTCCATAGGTGATTCCAAGGAGATGTTCACTTTTGG 333
|||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CGAGAAACACGAATCCTCTGCCACCTCCAAAGGTGATTCCAAGGAGATGTTCACTTTTGG 300
Query 334 ATCTTCAGAAGGAGTTTTGGGTCAACTTTACCCTAACAAGTGGCCTCTTGAAGAGCTTTT 393
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 301 ATCTTCAGAAGGAGTTTTGGGACAACTTTACCCTAATGAGTGGCCTCTTGAAGAGCTTTT 360
Query 394 GCCGCTTTGGAGGCCAACCATGGAATGCTACTATAAAAATGTCATGGAT---GTTGGTAA 450
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 361 GCCGCTTTGGAGGCCAACCATGGAACGCTACTATAAAACTGTCATGGATATTGTTGGTAA 420
Query 451 GAAATTGTTTGGCCTAGTGGCTTTGGCATTGAATTTAGAGGAAAACTACTTTGAACAAGT 510
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 421 GAAATTGCTTGGCCTAGTGGCTTTGGCATTGAATTTGGAGGAAAACTTCTTTGAAAAAGT 480
Query 511 GGGAGCTTTCAATGATCAAGCAGCGGTTGTTCGTCTCTTACGTTATTCAGGAGAATCAAA 570
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 481 AGGAGCCTTCAATGATCAAGCAGCAGTTGTTCGTCTCTTACGTTATCCAGGAGAGTTGAA 540
Query 571 TTCATCTGGAGAAGAAACATGTGGTGCCTCTGCTCATTCAGATTTTGGAATGATAACTCT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCATCTGGAGAAGAAACATGTGGTGCCTCTGCTCATTCAGATTTTGGAATGATAACTCT 600
Query 631 TCTTGCAACTGATGGAGTTGCAGGGCTTCAAGTTTGTAGAGATAAAGATAAAGAACCAAA 690
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTGCAACTGATGGTGTTGCAGGGCTTCAAGTTTGTAGAGATAAAGATAAAGAACCAAA 660
Query 691 AGTTTGGGAAGATGTCGCTGGTATTAAAGGGACTTTTGTTGTCAACATCGGCGACCTTAT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTTTGGGAAGATGTCGCTGGTATTAAAGGGACTTTTGTTGTCAACATCGGCGACCTTAT 720
Query 751 GGAAAGATGGACTAATGGTCTTTTCCGATCAACATTGCATAGAGTGGTGTCAGTGGGAAA 810
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 GGAAAGATGGACTAATGGTCTTTTCCGATCAACAATGCATAGAGTGGTGTCAGTGGGAAA 780
Query 811 GGAACGTTTTTCGGTGGCTGTATTTGTCGATCCAGACCCAAACTGCGTTGTAGAGTGCTT 870
||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 AGAACGTTATTCGGTTGCTGTATTTGTCGATCCAGACCCAAACTGTGTTGTAGAGTGCTT 840
Query 871 GGAGAGCTGTTGTAGTGAAACATCTCCTCCCAAGTTTCCACCGGTCCGGGCCAGAGATTA 930
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 841 GGAGAGCTGTTGTAGTGAAACATCTCCTCCCAGGTTTCCACCGGTCCGGGCCAAAGACTA 900
Query 931 TTTCCACGAGCGATTCAGTCAAACCCTCGCCTCGTACTCCGGTTCCGACT-A-AAATA 986
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 901 TTTCCACGAGCGATTCAGTCAAACCCTCGCCTCGTACTCCGGTTCCGACTGATAAATA 958
Score = 104 bits (56), Expect = 1e-21
Identities = 83/94 (88%), Gaps = 9/94 (10%)
Strand=Plus/Plus
Query 1016 TAAATAAGACATGTGTCAAATGTTTGAGTTT-CACTTTTGCGTGGACATGAAATAGCTAT 1074
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 953 TAAATAAGACATGTGTCAAATGTTTGAGTTTTCACTTTTGCTTGGACATGAAATA---AT 1009
Query 1075 TATAAACCAAAAGGTGATAAAACACTTAAAACAG 1108
| |||||||||||||||||||| |||||||
Sbjct 1010 -A----CCAAAAGGTGATAAAACACTGAAAACAG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5