BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16790.1
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493194 jgi|Araly1|493194|fgenesh2_kg.7__2627__AT4G16790.1 1179 0.0
> Ahg493194 jgi|Araly1|493194|fgenesh2_kg.7__2627__AT4G16790.1
Length=1511
Score = 1179 bits (638), Expect = 0.0
Identities = 717/756 (95%), Gaps = 1/756 (0%)
Strand=Plus/Plus
Query 16 TCTCTCTCTTCTTTCATCACCAAAATAAAGAACCTTGACAACTTCTCTACA-ACACTCAC 74
||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 1 TCTCTCTCTTCTTTCATTACCAAAATAAAGAACCTTTACAAGTTCTCTACACACACTCAC 60
Query 75 TTTTTCTCTCTAATGGTGGAAGCAAGAAGCTTGAAGAAACCAATCCAATTGGGTAATAAA 134
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 TTTTTCTCTCCAATGGTGGAAGCAAGAAGCTCAAAGAAACCAACCCAATTGGGTAATAAA 120
Query 135 GAAGATCAAAACCCTAGAAAATTCTACTCTCGATTCATCTTTAAAGCTCTTATCCTCACC 194
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GAAGATCAAAACCCTAGAAAATTCTACTCTCGATTCCTCTTTAAAGCTCTTATCCTCACC 180
Query 195 GTGCTCTGCGCCGTCGTACCTGTCTTCCTTTCTCAGACACCAGAGCTTGCTAACCAAACA 254
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 181 CTGCTTTGCGCCGTCGTACCTGTCTTCCTTTCTCAGACGCCGGAGCTTGCTAACCAAACA 240
Query 255 AGACTCCTCGAGCTTCTCCACCTTGTTTTCGTCGGTATCGCAGTCTCTTACGGTCTCTTC 314
|||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||
Sbjct 241 AGACTCATCGAGCTTCTCCACCTAGTTTTCGTCGGCATCGCCGTCTCTTACGGCCTTTTC 300
Query 315 AGCCGCAGGAACTACGACGGAGGAGGAGGTGGAGGAACAAGCAATAGTGATCACAACAAA 374
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 301 AGCCGCCGGAACTACGACGGAGGAGGAGGCGGAGGAACAAGCAATAGTGATAACAACAAA 360
Query 375 GCTGATCATAGTAATAATAATTCGCATTCATATGTGCCTAAGATTCTTGAAGTATCCTCT 434
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCTGATCATAGTAATAACAATTCGCATTCCTATGTGCCTAAGATTCTTGAAGTATCCTCT 420
Query 435 GTTTTTAACGTGGGTCACGAGAGTGAATCTGAACCGTCCGATGATTCCTCCGGTGATCAA 494
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 GTTTTTAACGTGGGTAACGAGAGCGAATCTGAACCGTCCGATGATTCCTCCGGCGATCAA 480
Query 495 CGTAAGTTTCAGACATGGAAGAACAAGTACCACATGAAAATCCCCGAGGTTGAGACTCGT 554
|||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 481 TGTAAGTTTCAGACATGGAAGAACAAGTATCACATGAAAATTCCTGAGGTTGAGACTCGT 540
Query 555 TTCGTTGATCGAGTTAGTTCAGAAAACAGAGAGAAGCCTCTGCTTTTGCCGGTTCGGAGC 614
|||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGTTGAGCGAGTAAGTTCAGAGATCAGAGAGAAGCCTCTGCTTTTGCCGGTTCGGAGC 600
Query 615 TTGAATTATTCTCGTGTTTCTGATTCTTCCGGCGATAATTCCGGTCGATGGGAGAAAGTG 674
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TTGAATTATTCTCGTGTTCCTGATTCCTCCGGCGATAATTCCGGTCGATGGGAGAAAGTG 660
Query 675 AGATCTAAGAGAGAACTTCTGAAGACTCTTGGTGATGATAATAGTGATGTGCTTCCTTCT 734
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AGATCTAAGAGAGAACTTCTGAAGACTCTTGGTGATGATAATAGTGATGTACTTCCTTCT 720
Query 735 CCGATTCCATGGAGGTCAAGatcatcttcatcatca 770
|||||||||||||||||||||||||| |||||||||
Sbjct 721 CCGATTCCATGGAGGTCAAGATCATCATCATCATCA 756
Score = 1046 bits (566), Expect = 0.0
Identities = 682/736 (93%), Gaps = 16/736 (2%)
Strand=Plus/Plus
Query 807 GTTAAGAATCTGACTACAGTTGAATCACAGCCGTTGATCAAGAATCTGACACCACCTTCT 866
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 757 GTTAAGAATATGGCTACAGTTGAATCACAGCCGTTGATCAAGAATCTGACACCATCTTCT 816
Query 867 TCTTTCTCTTCTCCAAGAAAGTCGAATCCTATACCTAATCTCGCATCTGAGTTCCATCCA 926
|||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||
Sbjct 817 TCTTTCTCTTCTCCAAGAAAGTCGAATCTTTTACCTAATCTCGCATCTCAGTTTCATCCA 876
Query 927 TCTCCGCCACCGCCTCCTCCGCCGCCGCCACCACTACCGGCGTTTTATAACTCCTCGTCG 986
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 877 TCTCCGCCACCTCCTCCTCCGCCGCCGCCACCTCTACCGGCGTTTTATAACTCATCGTCG 936
Query 987 AGAAAAGATCATCCCGGAATTTACAGGGTTGAGAGGAGAGAATCATCAGTTCACAAGACG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 937 AGAAAAGATCATCCCGGAATTTACAGGGTTGAGAGGAGAGAATCATCAGTTCACAAGGCG 996
Query 1047 AAATTTGCAGGAGGTGAGTTTCATCCTCCGCCGCCTCCTCCTCCACCACCTCCGGTGGAG 1106
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 997 AAATTTGCAGGAGGTGAGTTTCATCCTCCGCCGCCTCCACCACCACCACCTCCGGTGGAA 1056
Query 1107 TATTATAAGTCACCTCCGACAAAATTCAGACTAAGCAACGAACGGAGAAAGTCCTCGGAG 1166
|||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1057 TATTATAAGTCAGCTCCGACGAAATTCAGACTAGGCAACGAACGGAGAAAGTCTTCGGAA 1116
Query 1167 CAAAAGATGAAAAGAAACGCTCCTAA-AAAGGTTTGGTGGTCCGATCCAATCGTGGAATC 1225
|||||||||||||||||| ||||||| ||| || |||||||| |||||||||||||||||
Sbjct 1117 CAAAAGATGAAAAGAAACTCTCCTAAGAAA-GTGTGGTGGTCTGATCCAATCGTGGAATC 1175
Query 1226 GAAGGAACAAGACACAGAGA-AGAATGATCAAAGAAGTAACTTGGGAAGCAAGGC-AGTG 1283
|||||||||||||| || | ||||||||||||||||| |||||||||||||||| | |
Sbjct 1176 AAAGGAACAAGACACGGA-ACAGAATGATCAAAGAAGTTACTTGGGAAGCAAGGCAACT- 1233
Query 1284 GAAGAATCCG-AGAATGGAGAACAGAGAA-GAGGAGAAAATGAAATCCACGACGAGGTTG 1341
|| ||||| | || ||| |||||| |||| || ||||||||||||| |||||||||||||
Sbjct 1234 GAGGAATCGGAAG-ATGAAGAACATAGAAGGA-GAGAAAATGAAATTCACGACGAGGTTG 1291
Query 1342 AGAAGAAGATAGTAGAGGAAGAAGGAGTTAGTGAGATCAACAATGGAAGTGACGTGGACA 1401
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1292 AGAAGAAGATAGTAGAGGAAGAAGGAGTTTGTGAGAGCAACAATGGAAGTGACGTGGACA 1351
Query 1402 AGAAGGCAGATGAGTTCATTGCAAAGTTCAGAGAACAGATTAGGTTACAAAGAATCGAGT 1461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1352 AGAAGGCAGATGAGTTCATTGCAAAGTTCAGAGAACAGATTAGGTTACAGAGAATCGAGT 1411
Query 1462 CTATCAAGAGATCTACTAATAAGATCTCTGCAAATTCTTCGAGGTAGAAC-TCATT-A-T 1518
|||||||||||||| |||||||||||||||||| || |||||||||||| | ||| | |
Sbjct 1412 CTATCAAGAGATCTGCTAATAAGATCTCTGCAAGCTCCTCGAGGTAGAACAT-ATTCAAT 1470
Query 1519 -TTATTAATAATAGGT 1533
|| ||||||||||||
Sbjct 1471 ATT-TTAATAATAGGT 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5