BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16800.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493193 jgi|Araly1|493193|fgenesh2_kg.7__2626__AT4G16800.1 1129 0.0
> Ahg493193 jgi|Araly1|493193|fgenesh2_kg.7__2626__AT4G16800.1
Length=698
Score = 1129 bits (611), Expect = 0.0
Identities = 670/699 (96%), Gaps = 2/699 (0%)
Strand=Plus/Plus
Query 256 ATGTTGAAAAGTCTCCAGAACGCATTTGAGTCCATACATCAAGATAATTCCGCTAGGGTT 315
||| ||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 1 ATGCTGAAAAGTCTCCAAAACGCATTTGAGTCCATACAACAAGATAGTTCAGCTAGGGTT 60
Query 316 GTGATGATCAGAAGTCTGGTTCCAGGAGTTTTCTGTGCAGGTGCAGATCTTAAGGAACGT 375
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 61 GTGATGATTAGAAGTCTGGTTCCAGGTGTTTTCTGTGCAGGTGCAGATCTTAAGGTACGT 120
Query 376 AGAACTATGAGTCCATCTGAGGTTCACACATATGTCAACTCGTTGCGCTACATGTTCTCG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAACTATGAGTCCATCTGAGGTTCACACATATGTCAACTCGTTGCGCTACATGTTCTCG 180
Query 436 TTCATTGAGGCACTAAGTATCCCAACTATTGCTGCAATAGAAGGTGCAGCACTGGGAGGT 495
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCATGGAGGCACTGAGTATCCCAACTATTGCTGCAATAGAAGGTGCAGCACTGGGAGGT 240
Query 496 GGACTCGAAATGGCTCTAGCTTGTGATCTTCGAATCTGTGGCGAAAATGCGGTATTTGGC 555
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGACTTGAAATGGCTCTTGCTTGTGATCTTCGAATCTGTGGCGAAAATGCAGTATTTGGC 300
Query 556 TTGCCTGAAACAGGACTCGCTATAATCCCTGGAGCTGGTGGGACACAGAGGCTCTCAAGG 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TTGCCTGAAACAGGACTCGCTATAATCCCTGGAGCTGGTGGGACACAGAGGCTCTCGAGG 360
Query 616 CTGGTTGGGAGATCGGTATCAAAGGAACTTATATTTACAGGTCGAAAGATTGATGCAATA 675
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CTGGTTGGGAGATCGGTATCAAAGGAACTTATATTCACAGGTCGAAAGATTGATGCAATA 420
Query 676 GAAGCTGCAAATAAAGGGCTTGTGAACATTTGTGTTACGGCAGGTGAGGCTCATGAGAAA 735
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGCTGCAACTAAAGGGCTTGTGAACATTTGTGTTACGGCAGGTGAGGCTCATGAGAAA 480
Query 736 GCAATTGAAATGGCACAGCAGATAAACGAAAAAGGTCCATTAGCTATAAAGATGGCGAAG 795
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 481 GCAATTGAAATGGCTCAGCAGATAAATGAAAAAGGTCCATTGGCTATAAAGATGGCGAA- 539
Query 796 AAA-GCGATTGATGAAGGAATTGAAACAAATATGGCTTCAGGTTTGGAAGTAGAAGAGAT 854
||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||||||
Sbjct 540 AAAGGCGATTGATGAAGGAATAGAGACGAATATGGCTTCGGGTTTGGAGGTAGAAGAGAT 599
Query 855 GTGTTATCAGAAGCTTCTTAATACTCAAGATCGTCTTGAAGGATTAGCTGCTTTTGCTGA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGTTATCAGAAGCTTCTTAATACTCAAGATCGTCTTGAAGGATTAGCTGCTTTTGCTGA 659
Query 915 GAAGCGTAAGCCTCTGTACACTGGCAATTGAAAACCTTA 953
||||||||||||||| ||||||||||| |||| ||||||
Sbjct 660 GAAGCGTAAGCCTCTTTACACTGGCAAGTGAACACCTTA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5