BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16807.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329832 jgi|Araly1|329832|fgenesh1_pm.C_scaffold_7002059 1825 0.0
> Ahg329832 jgi|Araly1|329832|fgenesh1_pm.C_scaffold_7002059
Length=1821
Score = 1825 bits (988), Expect = 0.0
Identities = 1203/1306 (92%), Gaps = 18/1306 (1%)
Strand=Plus/Plus
Query 60 GGAAGATGGATACTCCGATTCAACATCTCCCATTTCCGAACCACCAGATATTACGAATTG 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGAAAATGGATACTCCGATTCAACATCTCCCATTTCCGAACCACCAGATATTACGAATTG 584
Query 120 GTTTCCCAGTTATGTATATGAATCGTTACCATTGTCTTCTTCAATCAATGAAATTGAAAT 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 585 GTTTCCCAGTTATGTCTATGAATCGTTACCATTGTCTTCTTCAATCAATGAAAGCGAAAA 644
Query 180 CGAAGTAGATGTGGTCAACAAAGCAAATCCTGGTGGTGTTATTGATGAATCACTTCCTTC 239
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 645 CGAAGTAGATGTGGTGAACAAAGTAAATCTTGGTGGTGTTATTGATGAATCACTTCCTTC 704
Query 240 TGAACCTCCTGATTTAGGTAAATGGTTTTCGAGCTATGTCTATGAATCGCCGTTGCTGGA 299
||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 705 TGAACCTCCTGATTTAGCTAATTGGTTTTCGAGCTATGTCTATGAATCACCGGTGCTGGA 764
Query 300 TACAAGTGATGGACTTGAATTGT-CTGTTCCTGGAGAAAGTGAATGTGTAAAGGAGACCC 358
||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 765 TACAAGTGATGTTCTTGAATTGTAC-GTTCCTGGAGAAAGTGAATGTGTAAAGGAGACAC 823
Query 359 AAACAGAAAATGAGTCACCAAAAATTGAAGGAAATGATGTTTGTCCGAGGTTATTAGAGC 418
||| |||||||||| | |||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 824 AAATAGAAAATGAGACGCCAAAAATTGAAAGAAACCATGTTTGTCCGAGGTTATTTGAGC 883
Query 419 AAGAACTTGTCTCTTCTACAAAGGTTACAGATTTCTCTG-AGTCGCAGTCTGTTCTTTCG 477
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 884 AAGAACTTGTCTCTTCTACAAAGGTTACAGATTTCTC-GCAGTCGGAGTCTGTTCTTTCG 942
Query 478 GAGCCTCCTGATCTCAGAAACTGGTTTTCAAGCTATGAGTATCAATCTCCTCAGCTTTCA 537
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAGCCTCCTAATCTTAGAAACTGGTTTTCAAGCTATGAGTATCAATCTCCTCAGCTTTCA 1002
Query 538 GACATTCAAGAATTTGGATTTT-TATATTCTGAGAAAGATGAGTTAATCATTGAGGAGAG 596
|| ||||||||| ||||||||| | | || |||||||||||||||| |||||||||||||
Sbjct 1003 GAAATTCAAGAACTTGGATTTTCT-TCTTTTGAGAAAGATGAGTTAGTCATTGAGGAGAG 1061
Query 597 TGACACTGAGGAGGGAATTAGTTCCGGTATATTTCGAAAAATTAAGAGCAGGCAAGAGA- 655
|||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1062 TGACACAGAGGACGGAATTAGTTCCGGTATATTTCGAAAACTTAAGAGCAAGCAAGAGAG 1121
Query 656 --CTGTTGGTCTTGGCAGGTTAGATTCAAATGACTACAAGGAAAACATAGCCACAGACAC 713
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1122 TACTATTGGTCTTGGCAGGTTAGATTCAAATGACTACAAGGAAAACATAGCCGCAGACAC 1181
Query 714 AGCCAAGGAGGTTTCTTTAGACAATGCAGT-TTCAGACCAAAAAATGGAAAAGAGGTCAT 772
|||||||||||| ||||||||||||||| | |||| ||||| ||||||||||||||||||
Sbjct 1182 AGCCAAGGAGGTCTCTTTAGACAATGCA-TATTCAAACCAAGAAATGGAAAAGAGGTCAT 1240
Query 773 CAGTTAGATTGTTAAATGCCTCAAAGAAAGATGTGAAACAAGAATCAAGCTTCAAGCAGG 832
||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1241 CAGTTGGATTGTTCAATGCCTCAAAGAAAGAAGCGAAACAAGAATCAAGCTTCAAGCAGG 1300
Query 833 AACCATTATTATGTGAACTACAAGAAGAAGCAAGGTTTAGCCCCAGAGTTTCCAGATACA 892
|| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1301 AAGCATTATTATGTAAACCACAAGAAGAAGCCAGGTTTAGCCCCAGAGTTTCCAGATACA 1360
Query 893 ACCCAAAACTCAAATCACCTTCGAAGAACGACACTTCTTTACATGAGTTGAGACCAATAC 952
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1361 ACCCAAAACCCAAATCACCTTCAAAGAACGACGCTTCTTTACATGAGTTGAGACCAATAC 1420
Query 953 ATATTCAAGAATCCATCTCCATGAACTCCAACAGACAAAAGTCTCCTCCAATAGAACAAG 1012
|||| ||||||||||||||||||||| |||||||||||| |||||| |||||| ||||
Sbjct 1421 ATATCCAAGAATCCATCTCCATGAACACCAACAGACAAATGTCTCC---AATAGACCAAG 1477
Query 1013 AATCATATGACAAGGAAAATGTTCACGGACAAAGCAATCAAACTGGATTTGTGACGATGA 1072
||||| ||||||||||||||||| |||||||||||| | |||||||||||||||| ||||
Sbjct 1478 AATCAGATGACAAGGAAAATGTTAACGGACAAAGCAGTGAAACTGGATTTGTGACCATGA 1537
Query 1073 AAAAGGCAAGTTTCAGAGAAGCAAGAGACCAATGTTCCCTGAAGAAACCAAATACAGAAG 1132
||||||| || ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1538 AAAAGGCTAGATTCAGAGAAGCAAGAGACCAATGTTCCCTGAAGAAACCAAATAGAGTAG 1597
Query 1133 TTCTGGTGAAGTGTTCGAGTAGTAAAGAGTTGAAGACAAAA-GCTGGGGAGGATA-ACAC 1190
|||| ||||||||||||||||||||||||| |||| | | ||||||||||| | |||
Sbjct 1598 TTCTCATGAAGTGTTCGAGTAGTAAAGAGTTAAAGA-ATATCGCTGGGGAGGA-AGACAA 1655
Query 1191 agaagaaagagagaaaaagagaagagTTTTGGGAGAAATGTCAAATCAACTGTCCTCCGT 1250
|||||||||| | || ||||||| ||||||||| |||||||| ||||| | |||||| |
Sbjct 1656 AGAAGAAAGAAACAAGAAGAGAAAAGTTTTGGGGGAAATGTCTAATCACCAGTCCTCTGG 1715
Query 1251 TGCTAAAGAGATCGCAGGAAAATGGCGCTGCCCGCAAAAGAACAAAAGGAAGATAGTTCC 1310
||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1716 AGCTGAAGAGATCGCAGGAAAATGGCGTTGCCCGCAGAAGAACAAACGGAAGATAGTTCC 1775
Query 1311 ACCATTGAAGCAGCTTCGACTTGACGCATGGATACACAAAGTCTGA 1356
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1776 ACCATTGAAGCAGCTTCGACTTGACGCATGGATACATAAAGTCTGA 1821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5