BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16820.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946545 jgi|Araly1|946545|scaffold_702774.1 2451 0.0
> Ahg946545 jgi|Araly1|946545|scaffold_702774.1
Length=1592
Score = 2451 bits (1327), Expect = 0.0
Identities = 1480/1555 (95%), Gaps = 5/1555 (0%)
Strand=Plus/Plus
Query 1 ATGCAGACACTTACGCCTAACGCCGACATATTCCATGCAAAACGCCGTCGTTTCACTTGC 60
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 22 ATGCATACACTTACGCCTAACGCCGACATATTCCAAGCTAAACGCCGTCGTTTCACTTG- 80
Query 61 AACACTCACACATCGACTTTGATTCCGACGAAGCCGCTCTCAGTTTCTCCCGCGAGAAAA 120
| | ||| || ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 81 TA-A-TCAAACTTCGACTTTGATTCCGACGAAGCCGCTCTCGGTTTCTCCGGCGAGAAAA 138
Query 121 ACCAACAAAGAACATCTCAGAAACCTTGAGAACGTTCTTAGAACTTCGTCAAACTCTATA 180
|||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 139 ACCAACAAAGAACATCTCAGAAACCTTGAGAACGTTCTTAAAACTTCTTCAAGTTCTATA 198
Query 181 GATCATATCGAAAATGTAACTTCTCGTCAAGAGAAGACGACGAAGAATACATCGACGTCA 240
|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 199 GATCATCTCGAAAATGTAACTTCTCGTCAAGATAAGACGACGACGAATACATCGACGTCG 258
Query 241 TCACTTCTCGGAGGTTTGAATTTGGCGCGAATATGGCCTCAGATGAAAGCAGCCGTCGAC 300
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 259 TCACTTCTTGGAGGTTTGAATTTGGCGCGAATCTGGCCTCAGATGAAAGCAGCCGTGGAC 318
Query 301 GAAATGTCGCCAAAGAATCTGAAACGGCTCCAAAGGCTTCTCTCAAAGTCATCCGAGGAA 360
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 319 GAAATGTCTCCAAAGAATCTGAAACGGCTCCAAAGGCTTCTCTCGAAGTCATCGGAGGAA 378
Query 361 CGTTCGCCGAAGAGTAAACTCGGGTCTAAATGGCGGGAGCTACACGGGTTAAACAACTGG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 CGTTCGCCGAAGAGTAAACTCGGGTCAAAATGGCGGGAGCTACACGGGTTAAACAACTGG 438
Query 421 GCCGGGTTGTTGGATCCGTTAGACGAGAATCTCCGGCGAGAGCTTGTCCGCTACGGAGAG 480
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 439 GCCGGGTTGTTGGATCCATTAGACGAGAATCTCCGGCGAGAGCTTGTCCGTTACGGAGAG 498
Query 481 TTTGTACAAGCGGCTTATCACGCGTTTCACTCAGACCCGGAAGGTTCGCCGAGACACGTG 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 TTTGTACAAGCAGCTTATCACGCGTTTCACTCAGACCCGGAAGGTTCCCCGAGACACGTG 558
Query 541 GCGTTACCTGATGGGTCATTTAAAGTGACCAAGAGTCTTTACGCCACGTCATCCGTTCGT 600
|| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 559 GCCTTACCTGATGGGTCTTTTAAAGTAACGAAGAGTCTTTACGCCACATCATCCGTTCGT 618
Query 601 TTACCTAAATGGATCGATGACGTTGCACCGGATCTCCGGTGGATGACTAAACAGACGAGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TTACCTAAATGGATCGATGACGTTGCACCGGATCTCCGGTGGATGACTAAACAGACGAGC 678
Query 661 TGGGTTGGTTACGTGGCGGTGTGTGATGATCCGAGAGAGATCCGACGGATGGGAAGGAGG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGGGTTGGTTACGTGGCGGTATGTGATGATCCGAGAGAGATCCGACGGATGGGAAGGAGG 738
Query 721 GAGATCGTCATCGCCCTCCGTGGAACCGCCACGTTGCTCGAATGGTCAGAGAATTTCAGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GAGATCGTCATCGCCCTCCGTGGAACCGCCACGTTGCTCGAATGGTCAGAGAATTTCAGG 798
Query 781 CCCAATCTCGTTTCAATGCCTGAGCCCAAACCCGATCAATCCGACCCGACTCGACCCAAA 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 799 CCCAATCTCGTTTCAATGCCTGAGCCCAAACCTGATCAATCCGACCCGACTCGACCCAAA 858
Query 841 GTGGAATGCGGATTTAATAGCCTCTACACGACGGGTGACCAACACGCACCAAGCCTCGCC 900
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 859 GTGGAATGTGGATTTAATAGCCTCTACACGACGGGTGGCCAACACGCACCAAGCCTCGCC 918
Query 901 GAGTCTTTGGTCGGCGAAATCAGCCGGCTCGTCGAGCTCTATGCAGGAGAGGAGCTGAGT 960
||||| |||||||| ||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 919 GAGTCGTTGGTCGGAGAAATCACCCGACTTGTCGAGCTCTACGCAGGAGAGGAGCTGAGC 978
Query 961 ATCAGCGTAACCGGCCACAGCCTCGGCGCCGCAATCGCGCTTCTCGCCGCCGACGACATC 1020
|||||||| || || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 979 ATCAGCGTCACGGGTCACAGCCTCGGTGCCGCAATCGCGCTTCTAGCCGCCGACGACATC 1038
Query 1021 GCCGAGCGTGTTCCACACGCGCCTCCGGTTGCGGTGTTTTCCTTTGGTGGGCCTCGAGTC 1080
||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1039 GCCGAGCGTGTACCACACGCGCCTCCGGTTGCGGTGTTCTCCTTCGGCGGGCCTCGAGTT 1098
Query 1081 GGGAACCGTGAGTTCGCGGATCGTTTGGATTCGAAAGGAGTGAAAGTCCTCCGCGTGGTT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1099 GGGAACCGTGAGTTCGCGGATCGTTTGGATTCGAAAGGAGTGAAAGTCCTCCGCGTCGTG 1158
Query 1141 AACAGCCAAGATGTGGTCACGAAAGTCCCCGGAATATTCGCCGATAACGATAAACAGGGG 1200
||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1159 AACAGCCAAGACGTGGTGACGAAAGTCCCCGGAATATTCTCCGATAACGATAAACATGGG 1218
Query 1201 CA-AAGTCGTAATAACGGGAGAAGTCCAGGGGGTATTATGGAAATGGTGGAGAGGAACAA 1259
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1219 CAGAA-TCGTAATAACGGGAGAAGTCCAGGGGGTATAATGGAAATGGTGGAGAGGAACAA 1277
Query 1260 TCCATGGGCTTACTCGCATGTGGGAGCAGAGCTCCGTGTAGACATGAAGATGTCTCCGTA 1319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1278 TCCATGGGCTTACTCGCATGTGGGAGCAGAGCTGCGTGTAGACATGAAGATGTCTCCGTA 1337
Query 1320 CTTGAAACCAAACGCTGACGTGGCGTGTTGCCATGACCTTGAGGCGTACTTGCACTTAGT 1379
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1338 CTTGAAACCGAACGCTGACGTGGCGTGTTGCCATGACCTGGAAGCGTACTTGCACTTGGT 1397
Query 1380 CGACGGGTTTTTGGCATCTAACTGTCCGTTTCGGGCAAACGCGAAACGGAGTTTAAGGAA 1439
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1398 CGACGGGTTTTTGGCATCTAACTGTCCGTTTCGTGCAAACGCGAAACGGAGTTTAAGGAA 1457
Query 1440 ACTGTTGGATGAGCAACGGTCAAACGTCAAGGTTTTGTACACAGGAAAGTCTTTAAGACT 1499
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1458 ACTGTTGGATGAGCAAAGGTCAAACGTCAAGGTTTTATACACAAGAAAGTCTTTAAGACT 1517
Query 1500 TAACCGTACTTTTCATGATAACGGAGATGTTTTGCCTAGTCCGTCGTCTTCATGA 1554
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1518 TAACCGTACTTTTCATGATAATGGAGATGTTTTGCCTAGTCCGTCGTCTTCATGA 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5