BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16830.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493188 jgi|Araly1|493188|fgenesh2_kg.7__2621__AT4G16830.3 2058 0.0
> Ahg493188 jgi|Araly1|493188|fgenesh2_kg.7__2621__AT4G16830.3
Length=1447
Score = 2058 bits (1114), Expect = 0.0
Identities = 1344/1448 (93%), Gaps = 44/1448 (3%)
Strand=Plus/Plus
Query 3 Ctattccaaatttccacacattt-tattttcatttcttaatatttatttccttatcattt 61
||| ||||||||||||||||||| | |||||| || | ||| | |||||||||||
Sbjct 1 CTAATCCAAATTTCCACACATTTGT-TTTTCA----TT--T-TTT-TCCCCTTATCATTT 51
Query 62 ctttcTCTCACCAACCAACAAGTTCTCCTTTCTACCCATTTCGTCTCCTTCATTTTGACG 121
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 52 CTTTCTCTCACCAACCAACAAGTTCTCCTCTATACCCATTTCGTCTCCTTCATTTTGACG 111
Query 122 TTTTCTTTAGATCTGTTAATAATCCCATCCATGGCTTGGTCTAGTCACTAGTGGTGTTAT 181
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 112 TTTTCTTTAGATCTGTTAAT-A----ATCCATGGCTTGGTCTAGTCACTAGTGGTGTTAT 166
Query 182 CTCTCTGTGTGGAATAAAAAGCAAGGTTTTTTAATCACTTGGATTGTTTTAA-GATATGG 240
||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| || ||||
Sbjct 167 CTCTCTGTGTGGAATAAAAAGCAAGGTTTTTGAATTACTTGGGTTG-TTTAAGGAGATGG 225
Query 241 CAACTTTGAACCCTTTTGATTTGTTGGATGATGATGCTGAGGATCCAAGCCAGCTCGCTG 300
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 226 CAACTTTGAACCCTTTTGATTTGTTGGATGACGATGCTGAGGATCCGAGCCAGCTCGCTG 285
Query 301 TTGCCATCGAGAAGATTGATAAGTCCAAGAAATCTGGACAGGTTTCGAGCTTGCCTGCTA 360
|| ||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 286 TTTCCATCGACAAGATTGATAAGTCCAAGAAATCTGGACCCGTTTCGGGCTTCCCTGCTA 345
Query 361 AGTCAGCTCCTAAGCTTCCATCGAAGCCACTTCCTCCTGCTCAAGCCGTGAGAGAGGCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AGTCAGCTCCTAAGCTTCCATCGAAGCCACTTCCTCCTGCTCAAGCCGTGAGAGAGGCAA 405
Query 421 GGAGTGATGCTCCAC---GTGGTGGTGGAGGCCGTGGAGGATTTAACCGTGGTCGTGGTG 477
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 406 GGAGTGATGCTCCACGTGGTGGTGGTGGAGGCCGTGGAGGATTTAGCCGTGGTCGTGGTG 465
Query 478 GTTACAACCGTGATGATGGTAACAATGGATATTCAGGGGGATACACTAAACCCTCAGGTG 537
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 466 GTTACAACCGTGAGGATGGTAATAATGGATATTCAGGAGGATACACTAAACCCTCAGGGG 525
Query 538 AAGGAGATGTTTCAAAGTCTTCTTACGAGAGGCgtggcggtggtggtgctcct--cgtgg 595
|||||||| | ||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 526 AAGGAGATATGTCAAAGTCTTCTTACGAGAGGCGTGGCGGTGGTGGTGGTGGTGGAGGGG 585
Query 596 ttccttccgtgg---tgaaggtggtggacctggtggtggtcgtcgtggtggattcagcaa 652
||| | ||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct 586 CTCC-T-CGTGGTTCTTTCCGTGGTGAAGGTGGTGGTGGTCGTCGTGGTGGATTCAGCAA 643
Query 653 tgagggtggtgatggGGAACGTCCTCGAAGGGCCTTTGAGCGTCGTAGTGGAACTGGCAG 712
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGAGGGTGGTGAAGGAGAACGTCCTCGAAGGGCCTTTGAGCGTCGTAGTGGAACTGGCAG 703
Query 713 AGGGAGTGACTTCAAGCGTGACGGATCTGGTCGTGGGAATTGGGGAACTCCAGGGGAAGA 772
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 704 AGGGAGTGACTTCAAGCGTGACGGATCTGGTCGTGGCAATTGGGGAACTCCAGGGGAAGA 763
Query 773 GATAGCTGCTGAGACTGAAGCAGTAGCTGGTGTTGAGACTGAGAAGGATGTTGGAGAGAA 832
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 764 GTTAGCTGCTGAGACTGAAGCAGTAGCTGGTGTTGACACTGAGAAGGATGTTGGAGAGAA 823
Query 833 GCCAGCTGTTGATGATGTAGCTGCTGATGCTAACAAGGAGGATACTGTTGTTGAGGAGAA 892
|| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 824 GCTAGCTGTTGATGATGTAGCTGCTGATGCTAACAAGGAGAACACTGTTGTTGAAGAGAA 883
Query 893 AGAGCCTGAGGATAAGGAAATGACTCTTGATGAGTATGAGAAAATACTCGAGGAGAAGAA 952
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 884 AGAGCCTGAGGATAAGGAAATGACTCTTGATGAGTATGAGAAAATACTTGAGGAGAAGAA 943
Query 953 AAAGGCACTTCAATCATTAACTACCTCTGAGAGGAAAGTTGATACGAAAGTGTTTGAATC 1012
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 944 AAAGGCACTTCAATCATTGGCCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATC 1003
Query 1013 AATGCAACAACTGTCAAACAAGAAGTCTAATGATGAAATCTTCATCAAGCTGGGTTCTGA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AATGCAACAACTGTCAAACAAGAAGTCTAATGATGAAATCTTCATCAAGCTGGGTTCTGA 1063
Query 1073 TAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGCTGTGAGCATCAATGA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGCTGTGAGCATCAATGA 1123
Query 1133 GTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGG---Tcgtggtggccgtgg 1189
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 1124 GTTTCTGAAGCCAGCAGAGGGTGAGAACTACTACCGAGGAGGAGGTCGTGGTGGCCGCGG 1183
Query 1190 acgtggtggtcgtggccgtggaggtgtttctagtggcgaatctggtggtTACCGTAATGA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 ACGTGGTGGTCGTGGCCGTGGAGGTGTTTCTAGTGGCGAATCTGGTGGTTACCGTAATGA 1243
Query 1250 AGCTGCACCGGCAATTGGAGATGCTGCTCAGTTCCCATCTCTTGGGGGCAAGTAAGATCC 1309
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AGCTGCACCAGCCATTGGAGATGCTGCTCAGTTCCCATCTCTTGGGGGCAAGTAAGATCC 1303
Query 1310 ATCCATGATAACGTCCACACTCGTGCATCCTCCTTTAGGATTTTGTGCGAGGATTTACTG 1369
|||||| | | || |||||||||||| |||||||||||||||||||||||||
Sbjct 1304 ATCCAT-A---C-TC-------GTGCATCCTCCTCTAGGATTTTGTGCGAGGATTTACTG 1351
Query 1370 TTTACTGGTCTCTCGTTGTCAGATGTAAATAATTAGGTGTCGTCGTCAGTTTTTAGATTT 1429
||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1352 TTTACCGGTCTCTCGTTGTCAGATGTAAATTTTTAGGTGTCA--GTCAGTTTTTAGATTT 1409
Query 1430 TATGCAAA 1437
||||||||
Sbjct 1410 TATGCAAA 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5