BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16835.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329829 jgi|Araly1|329829|fgenesh1_pm.C_scaffold_7002056 1400 0.0
Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1 89.8 7e-17
> Ahg329829 jgi|Araly1|329829|fgenesh1_pm.C_scaffold_7002056
Length=2562
Score = 1400 bits (758), Expect = 0.0
Identities = 875/932 (94%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 1 ATGCTTTCTCGCTTCAACATTCATCAGCCATTTAAACGCTGTAAATTTCGATTCTTTTTG 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1 ATGCTTTCTCGCTTCAACATTCATCAGCCATTAAAACGCTGGAAATTTCGATTCTTTTCG 60
Query 61 CGTTCCA-TTGGAAACCCAGATACCATTTTGGTGGAATCATGTTCGTCTTCCT-CTTGTT 118
|| | || | | |||||||||| |||||||||||| |||||||| ||||| || ||||||
Sbjct 61 CGCT-CAGTAGAAAACCCAGATGCCATTTTGGTGGGATCATGTTTGTCTT-CTACTTGTT 118
Query 119 CATCGCCAGAGCCATCTCTGGTTCGTTCCGATTACTTGACTAAACCTTCTGATCAAGACC 178
||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 119 CATCGCCAGAGCCATCTCTGGTTCGCTCCGATCACTTGACTAAACCTTCTGATGAAGACC 178
Query 179 AGATTTTTCCGTTGAACAAGATAATAGCTAGGTGTGTACGTTCAGGAGATATAGATGGAG 238
|||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 179 AGATTTTTCCGTTGAACAAGATTATAGCTACACGTGTACGTTCAGGAGATATTGATGGAG 238
Query 239 CTCTTAGAGTGTTTCACGGAATGAGAGCTAAGAACACCA-TTACCTGGAATTCTCTGCTC 297
||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 239 CTCTTAGTGTGTTTCACGGAATGAGAGCTAAGAACA-CAGTTTCCTGGAATTCTCTGCTC 297
Query 298 ATTGGGATTTCTAAAGATCCAAGCAGAATGATGGAAGCACACCAACTGTTCGACGAAATC 357
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 GTGGGGATTTCTAAAGATCCAAGCAGAATGATGGAAGCACACCAACTGTTCGATGAAATC 357
Query 358 CCTGAACCAGATACTTTCTCTTATAACATTATGTTGTCTTGCTACGTTCGTAATGTTAAC 417
|||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||
Sbjct 358 CCTGAACCAGATACTTTCTCCTACAACATTATGTTGTCTTGCTACGTTCGTAACGGAAAC 417
Query 418 TTCGAGAAGGCACAGAGCTTCTTCGATCGGATGCCATTCAAGGATGCGGCGTCATGGAAC 477
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TTCGAGAAGGCCCAGAGCTTCTTCAATCGGATGCCATTCAAGGATGCGGCGTCATGGAAC 477
Query 478 ACGATGATCACAGGGTATGCACGAAGAGGTGAAATGGAGAAAGCGCGGGAATTGTTCTAC 537
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 478 ACAATGATCACAGGGTATGCACGAAGAGGTGAAATGGAGAAAGCACGGGTATTGTTCTAT 537
Query 538 TCCATGATGGAGAAGAATGAAGTTTCTTGGAATGCCATGATCTCTGGATACATTGAATGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCATGATGGAGAAGAATGAAGTTTCTTGGAATGCCATGATCTCTGGATACATTGAATGC 597
Query 598 GGAGATTTGGAAAAGGCATCACATTTCTTCAAAGTGGCTCCAGTTAGAGGCGTCGTGGCT 657
|||||||||||||||||| |||||||||||| || ||||||| |||||||||| |||||
Sbjct 598 GGAGATTTGGAAAAGGCAGCACATTTCTTCAGAGCGGCTCCATTTAGAGGCGTTGTGGCA 657
Query 658 TGGACGGCGATGATCACAGGGTACATGAAAGCCAAGAAGGTTGAATTAGCTGAGGCAATG 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 TGGACGGCGATGATCACAGGGTACATGAAAGCCAAGAAGGTTGAATTAGCTGAGGCTATG 717
Query 718 TTCAAAGACATGACAGTGAATAAAAATCTTGTAACTTGGAATGCTATGATCTCTGGTTAT 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCAAAGACATGACAGTGAAGAAAAATCTTGTAACTTGGAATGCTATGATCTCTGGTTAT 777
Query 778 GTTGAAAATTCTAGGCCAGAAGATGGATTGAAGCTTTTCAGAGCTATGCTTGAGGAAGGA 837
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTGAAAATTCCCGGCCCGAAGATGGATTGAAGCTTTTCAGAGCTATGCTTGAGGAAGGA 837
Query 838 ATTAGGCCTAACTCGTCTGGACTAAGCAGCGCATTGCTCGGATGCAGTGAATTATCGGCG 897
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 838 ATTAGGCCTAACTCGTCTGGACTAAGTAGCGCATTGCTCGGATGCAGCGAATTATCGGCT 897
Query 898 TTACAATTAGGGAGGCAAATACATCAGATAGT 929
||| |||||||||||||| |||||||||||
Sbjct 898 TTATGTTTAGGGAGGCAAATCCATCAGATAGT 929
Score = 1345 bits (728), Expect = 0.0
Identities = 826/873 (95%), Gaps = 8/873 (1%)
Strand=Plus/Plus
Query 981 TATGTACTGCAAATGTGGAGAACTTGGTGATGCTTGGAAGCTCTTTGAGGTGATGAAGAA 1040
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 930 TATGTACTGCAAATGTGGAGAACTTGGTGATGCTTGGAAACTCTTTGAGGCGATGAAGAA 989
Query 1041 GAAAGATGTTGTGGCGTGGAACGCAATGATTTCCGGGTATGCTCAGCACGGTAATGCGGA 1100
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 990 GAAAGATGTTGTGGCGTGGAATGCAATGATTTCCGGGTATGCTCAGCACGGTAATGCGGA 1049
Query 1101 TAAGGCTCTGTGTTTGTTCCGTGAGATGATAGATAACAAGATCAGA-CCGGATTGGATAA 1159
||||||||||||||||||| |||||||| ||||| ||||| || | |||||||||||||
Sbjct 1050 AAAGGCTCTGTGTTTGTTCCATGAGATGAGAGATAGCAAGA-CAAAGCCGGATTGGATAA 1108
Query 1160 CGTTTGTTGCGGTTTTACTGGCCTGTAACCATGCTGGACTAGTGAATATTGGGATGGCAT 1219
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1109 CGTTTGTTGCGGTTTTACTGGCCTGTAACCATGCTGGACTAGTGGATATAGGGATGGCGT 1168
Query 1220 ATTTCGAATCGATGGTGAGAGATTATAAGGTAGAACCGCAGCCTGATCATTACACGTGTA 1279
| ||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 1169 ACTTCGATTCAATGGTGAGAGATTACAGGGTAGAACCGCGGCCTGATCATTACACGTGTA 1228
Query 1280 TGGTTGATCTTTTGGGTCGGGCTGGGAAGCTGGAGGAGGCATTGAAACTGATAAGATCAA 1339
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1229 TGGTTGATCTTTTGGGTCGGGCTGGGAAGCTGGAAGAGGCATTGAAACTGATAAGATCAA 1288
Query 1340 TGCCGTTTAGACCTCATGCTGCGGTCTTTGGGACGCTCTTAGGGGCTTGTAGAGTGCACA 1399
|||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1289 TGCCGTGTAGACCGCATGCTGCAGTCTTTGGGACGCTCTTAGGGGCATGTAGAGTGCACA 1348
Query 1400 AGAATGTGGAATTGGCTGAATTTGCAGCTGAGAAACTGCTTCAGCTAAACTCGCA-AAAT 1458
|||||||||| ||||||||||| |||||||||||||||||| ||||| || || | ||||
Sbjct 1349 AGAATGTGGAGTTGGCTGAATTCGCAGCTGAGAAACTGCTTGAGCTAGACCCG-AGAAAT 1407
Query 1459 GCAGCCGGGTATGTGCAGCTTGCGAATATCTACGCATCGAAGAATCGTTGGGAAGACGTT 1518
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 GCAGCTGGGTATGTTCAGCTCGCGAATATCTACGCATCGAAGAATCGTTGGGAAGACGTT 1467
Query 1519 GCAAGGGTTCGCAAGAGAATGAAAGAGAGCAATGTTGTGAAGGTACCTGGATACAGTTGG 1578
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1468 GCAAGGGTTCGCAAGAGAATGAAAGAGAGCAATGTTGTGAAGGTACCCGGATACAGTTGG 1527
Query 1579 ATCGAAATACGAAACAAAGTTCACCATTTCAGATCAAGTGATCGGATTCACCCTGAACTA 1638
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1528 ATCGAGATACGAAACAAGGTTCACCATTTCAGATCAAGTGATCGGATTCACCCGGAACTA 1587
Query 1639 GACTCAATACACAAGAAACTGAAGGAGTTGGAGAAGAA-GATGAAACTAGCTGGATACAA 1697
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 1588 GACTCAATACACAAGAAACTAAAGGAGTTGGAGA-GAAAGATGAAACTAGCTGGATACAA 1646
Query 1698 ACCGGAACTAGAGTTTGCTTTACACAATGTAGAGGAAGAGCAAAAAGAGAAGCTATTGTT 1757
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1647 ACCGGAGCTAGAGTTTGCTTTACACAATGTAGAAGAAGAGCAAAAGGAGAAGCTATTGTT 1706
Query 1758 ATGGCACAGCGAGAAGTTAGCTGTTGCATTTGGTTGCATAAAACTCCCTCAAGGTTCAC- 1816
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 ATGGCATAGCGAGAAGTTAGCTGTTGCATTTGGTTGCATAAAACTCCCTCAAGGTTCACC 1766
Query 1817 AGATACAAGTGTTCAAGAACTTGAGAATCTGTG 1849
| |||||||||||||||||||||||||||||||
Sbjct 1767 A-ATACAAGTGTTCAAGAACTTGAGAATCTGTG 1798
> Ahg484454 jgi|Araly1|484454|fgenesh2_kg.5__446__AT3G26782.1
Length=1996
Score = 89.8 bits (48), Expect = 7e-17
Identities = 116/148 (78%), Gaps = 7/148 (5%)
Strand=Plus/Plus
Query 1827 GTTCAAGAACT-TGAGAATCTGTGGTGATTGTCATAAAGCAATCAAATTTATCTCGGAGA 1885
||| ||||| | ||||| | || | ||||||||||| | ||||| || || || |||
Sbjct 1843 GTT-AAGAA-TCTGAGAGTTTGCAGCGATTGTCATAATGTGATCAAGTTGATTTCAAAGA 1900
Query 1886 TAG-AGAAACGAGAGATCATTGTAAGAGACACCACA-AGGTTTCACCATTTCAAAGATGG 1943
| | || | ||||| | | || ||||| || | | ||||||||||||||||||||||
Sbjct 1901 TTGTTGATA-GAGAGTTTGTGGTTAGAGATACGA-AGCGGTTTCACCATTTCAAAGATGG 1958
Query 1944 GTCTTGCTCTTGTGGCGATTACTGGTGA 1971
||||||||||||||||||||| ||||||
Sbjct 1959 GTCTTGCTCTTGTGGCGATTATTGGTGA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5