BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16850.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493182 jgi|Araly1|493182|fgenesh2_kg.7__2615__AT4G16850.1 1873 0.0
> Ahg493182 jgi|Araly1|493182|fgenesh2_kg.7__2615__AT4G16850.1
Length=1235
Score = 1873 bits (1014), Expect = 0.0
Identities = 1167/1241 (94%), Gaps = 9/1241 (1%)
Strand=Plus/Plus
Query 1 ATTTTGACTTGTTCTTTCTCAATGAATCCCTCACAAGCAGCAAGCTTCTTCGATTTTGCT 60
|||||||||||||| |||||||||||| | || | | ||||||||||||||| ||||||
Sbjct 1 ATTTTGACTTGTTCCTTCTCAATGAATTCTTC-CCA--AGCAAGCTTCTTCGAATTTGCT 57
Query 61 TTGACACCACCAATCAGTGTTTTCGAATCTTTCAGGTCTTAT-AC-AAGACTACAGTCTC 118
|||||||||||||| ||||||||||||||||||||| || | | | ||| ||||||||
Sbjct 58 CTGACACCACCAATCGGTGTTTTCGAATCTTTCAGGT-TTGTCTCGATGAC-ACAGTCTC 115
Query 119 TAGAAGCATAATATCGTCGACTCTGTTTTGAGTTTCCCAACAGTGGTTGAAGCTTAAGGA 178
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 116 TAGAAGCATAATATCGTCTACTCAGTTTTGAGTTTCCCAACAGTGGTTGAAGCTTAACGA 175
Query 179 GGTTCTTATGTGCCTTTTGAAATCATGATTGAGGTAAAGCGACCTGGTTCTTCCACGCGG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GGTTCTTATGTGCCTTTTGAAATCATGATTGAGGTAAAGCGACCTGGTTCTTCCACGCGG 235
Query 239 ATCACCACAACACTCCTTGATTCTTTCATGATTCTTTTCAGAAACAAACACATCTTATTA 298
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 236 ATCACCACTACACTCCTTGATTCTTTCATCATTCTCTTCAGAAACAAACACATCTTAATC 295
Query 299 CCAATCTTTGCTTTCATAGCGATCCCTCTCGCAGCCTTACACCTCTCCTTAACTCTTACC 358
||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 CCAGTCTTTGCCTTCATAGCGATCCCTCTCGCAGCCTTACACCTCTCCCTAACTCTTACT 355
Query 359 TCCTTTCGCCTTAAAAACCATGTCTTTCGTTTAGAAGCCTTAGCTAACGTTGTGCATACA 418
|||||||||||||||||||||||||||||| | |||||| ||||||| || |||||||||
Sbjct 356 TCCTTTCGCCTTAAAAACCATGTCTTTCGTCTGGAAGCCCTAGCTAATGTCGTGCATACA 415
Query 419 CGGTTTGAAGCTAGACAGATTTGGCAAGAGTCTAGAGAAGATGCTGTCTCGCTTTTACAT 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 416 CGGTTTGAAGCTAGACAGATCTGGCAAGAGTCTAGAGAAGATGCTGTCTCGCTTTTACAT 475
Query 479 CTCAAATTCCGGTATTTCGTCCCATCCTTTATCCTCTCCTGTATGGCCTCCATAACTGTC 538
||||||| |||||||||||||||||| || |||||||| ||||| || || ||||| |||
Sbjct 476 CTCAAATCCCGGTATTTCGTCCCATCATTCATCCTCTCTTGTATCGCTTCGATAACCGTC 535
Query 539 ATCACATCAACTTCCTTCTCACACCAAGGCATAAACCCATCTCTGAAGTCGTCATTTGCT 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 536 ATCACATCAACTTCCTTCTCACACCAAGGCCTAAACCCATCTCTGAAGTCGTCATTTGCT 595
Query 599 TCAGTCAAGTCTTCGTGGATGCGAGTAACAGCAACTTCCATCATCGTCTACGGTCTGCTC 658
||||| ||||| || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 596 TCAGTGAAGTCCTCTTGGATGAGAGTAACAGCAACTTCCATCATCGTCTATGGTCTGCTC 655
Query 659 TTCCTCTACTCACCAATTTCCATGTTTCTATCAGCTCTCGTTGGTTATACACCTACATTG 718
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 656 TTCCTCTACTCACCAATTCCCATGTTTCTATCAGCTCTCGTTGGTTACACACCCACATTG 715
Query 719 CGTTATCTAATCACGATCCTCTTTCTCGGAGTTGAGGTATACATAATGGCTATAACAGGG 778
|||||||| ||||| ||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 716 CGTTATCTCATCACAATCTTCAGTCTCGGTGTTGAGGTATACATAATGGCTATAACAGGG 775
Query 779 CTTGGGTTTGTCGTCTCTGTATTGGAAGAAAGATACGGTTTTGATGCGATTAAGGAAGGA 838
||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 776 CTTGGCCTTGTCGTCTCTGTATTAGAAGAAAGATACGGTTTTGATGCGATCAAGGAAGGA 835
Query 839 ACCGCTCTGATGAAAGGGAGGAGGATAACAGGGTTGGCCTTGGCGGGTGTATTTGTGTTT 898
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 ACCGCCCTGATGAAAGGGAGGAGGATAACAGGGTTGGCTTTGGCGGGTGTATTTGTGTTT 895
Query 899 CTATCGAGTTTCATTGGTCATGGGATGGAGAAGTTGGCGAAGGAGCTAGATATGGACTTG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 CTATCGAGTTTCATTGGTCATGGGATGGAGAAGTTGGCGAAGGAGCTAGATATGGACTCG 955
Query 959 AGCTCAGGGTCGTGGTGGAGGTCGGTGGTTGTGGCCGGTGGGTGGGACGGGTGGAAGCTG 1018
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGCTCAGGATCGTGGTGGAGGTCGGTGGTTGTGGCCGGTGGGTGGGACGGGTGGAAGCTG 1015
Query 1019 GTTTGTATGTATGGGGCTGAGGTTGTGCTGAGTTATGTTGTAATCACTGTTTTTTACTGT 1078
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTTTGTATGTATGGGGCTGAGGTGGTGCTGAGTTATGTTGTAATCACTGTTTTTTACTGT 1075
Query 1079 GAGTGTAGGAAACGCCATGGTAACAGTTATGCAATTGTTGCTGATGAGGAAGGTCTTGCT 1138
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1076 GAGTGTAGGAAACGCCATGGTAGCAGCGATGCAATTGTTGCTGATGAGGAAGGTCTTGCT 1135
Query 1139 ATTTAAAATTAGTTCCAACACTTTTTTGTTGTTGATAATTCTCTTGTGAA-TCTGTGAAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1136 ATTTAAAATTAGTTCCAACACTTTTTTGTTGTTGATAATTCTCTTGTGAAAT-TGTGAAA 1194
Query 1198 TACATTTTTGTTTACCAAGATTATGATTTATTCATTGCTTT 1238
|||||||||||||||||| |||||||||||||||||| |||
Sbjct 1195 TACATTTTTGTTTACCAAAATTATGATTTATTCATTGTTTT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5