BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16950.1
Length=4689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890529 jgi|Araly1|890529|Al_scaffold_0007_2515 3537 0.0
> Ahg890529 jgi|Araly1|890529|Al_scaffold_0007_2515
Length=3744
Score = 3537 bits (1915), Expect = 0.0
Identities = 2728/3107 (88%), Gaps = 109/3107 (4%)
Strand=Plus/Plus
Query 135 cttcttcttcttctGGCAGACGGAGATACGACGTTTTTCCAAGCTTCAGTGGGGTTGATG 194
|||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 11 CTTCTTCTTCTTCTGGTAGCCGGAGATACGACGTTTTCCCAAGCTTCAGTGGGGAAGATG 70
Query 195 TTCGCAAGACGTTCCTCAGCCATCTAATCGAGGCGCTCGACGGCAAATCAATCAATACAT 254
||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||
Sbjct 71 TTCGCAAGACGTTCCTCAGCCATCTTCTCAAGGCTCTCGACGGAAAATCAATCAATACAT 130
Query 255 TCATCGATCATGGAATCGAGAGAAGCCGCACAATCGCCCCTGAGCTTATATCGGCGATTA 314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TCATGGATCATGGAATCGAGAGAAGCCGCACAATCGCCCCTGAGCTTATATCGGCGATTA 190
Query 315 GAGAAGCTAGGATCTCAATCGTCATCTTCTCTAAGAACTATGCTTCTTCAACGTGGTGCT 374
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 191 GAGAAGCGAGGATCTCAATCGTGATCTTCTCTAAGAACTATGCTTCTTCCACGTGGTGCT 250
Query 375 TAAATGAATTGGTTGAGATCCACAAGTGCTT-TAATGATTTAGG-TCAAATGGTGATTCC 432
| ||||||||||| |||||||||||||| || || || || || |||||||||||||||
Sbjct 251 TGAATGAATTGGTGGAGATCCACAAGTG-TTGCAAGGACTT-GGATCAAATGGTGATTCC 308
Query 433 AGTTTTCTACGACGTTGATCCTTCGGAAGTTAGAAAACAGACCGGCGAATTTGGAAAGGT 492
||||||||| || ||||||||||||||||||||||||||| ||| |||||||| | ||
Sbjct 309 GGTTTTCTACTACATTGATCCTTCGGAAGTTAGAAAACAGATCGGTGAATTTGGCGATGT 368
Query 493 CTTTGAAAAGACATGCGAGGTCAGCAAGGACAAACAACCAGGGGATCAGAAACAAAGATG 552
|||| |||| | | | | | || ||||| | |||||| ||||||||||||||||||
Sbjct 369 CTTT-AAAA-A-A-AC-A--T--GCGAGGAC--A-AACCAGAGGATCAGAAACAAAGATG 416
Query 553 GGTGCAAGCTCTCACAGATATAGCAAATATAGCCGGAGAGGATCTTCTGAACGGGCCTAA 612
|||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |
Sbjct 417 GGTGCAAGCTCTCACAGATATATCAAATATAGCCGGGGAGGATCTTCGGAACGGGCCTGA 476
Query 613 TGAAGCGCATATGGTTGAAAAGATATCCAATGATGTTTCGAATAAAC-TTATCACTCGGT 671
||||||||||||||||||||||||| ||||||||||||||||||||| || || ||| |
Sbjct 477 TGAAGCGCATATGGTTGAAAAGATAGCCAATGATGTTTCGAATAAACTTTTTC-CTCCGC 535
Query 672 CAAAGTGTTTTGATGACTTCGTCGGAATTGAAGCTCATATTGAGGCAATAAAATCAGTAT 731
||||| |||||| |||||| ||||||||||||| |||||| ||||||||||||||| |||
Sbjct 536 CAAAGGGTTTTGGTGACTTAGTCGGAATTGAAGATCATATAGAGGCAATAAAATCAATAT 595
Query 732 TGTGCTTGGAATCCAAGGAAGCTAGAATGGTCGGGATTTGGGGACAATCAGGGATTGGTA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGTGCTTGGAATCCAAGGAAGCTAGAATGGTCGGGATTTGGGGACAATCAGGGATTGGTA 655
Query 792 AGAGTACCATAGGAAGAGCTCTTTTCAGTCAACTCTCTATCCAATTCCCCCTTCGCGCTT 851
||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||
Sbjct 656 AGAGTACCATAGGAAGAGCTCTTTTCAGTCAACTCTCTAGCCAATTCCACCATCGGGCTT 715
Query 852 TCCTAACTTATAAAAGCACCAGTGGTAGTGACGTCTCTGGCATGAAGTTGAGTTGGGAAA 911
|| |||||||||||||||||||||| | || |||| |||||||||||||||||||||||
Sbjct 716 TCATAACTTATAAAAGCACCAGTGG--G-GATGTCTTTGGCATGAAGTTGAGTTGGGAAA 772
Query 912 AAGAACTTCTCTCTGAAA-TCTTAGGTCAAAAGGACATAAAGATAGAGCATTTTGGTGTG 970
||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 773 AAGAACTTCTCTC-GAAAATCTTAGGCCAAAAGGACATAAATATAGAGCATTTTGGTGTG 831
Query 971 GTGGAGCAAAGGTTGAAGCACAAGAAAGTTCTTATCCTTCTTGATGATGTGGATAATCTA 1030
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTGGAGCAGAGGTTAAAGCACAAGAAAGTTCTTATCCTTCTTGATGATGTGGATAATCTA 891
Query 1031 GAGTTTCTTAAGACCTTGGTGGG-AAAAGCTGAATGGTTTGGATCGGGAAGCAGAATTAT 1089
||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||
Sbjct 892 GAGTTTCTTAAGACCTTGGTGGGGAAAA-CTGAATGGTTTGGACCTGGAAGCAGAATTAT 950
Query 1090 TGTGATCACTCAAGATAGGCAATTTCTCAAGGCTCATGACATTGACCTTGTATATGAGGT 1149
|||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||
Sbjct 951 TGTGATCACTCAAGATAGGCAACTTCTTAAGGCTCATGATATTGACCTTTTATATGAGGT 1010
Query 1150 GAAGCTGCCATCTCAAGGTCTTGCTCTTACGATGTTATGCCGATCTGCTTTTGGGAAAGA 1209
|||| | |||||||||| ||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1011 GAAGTTCCCATCTCAAGATCTTGCTCTTAAGATGTTGTGCCGGTCTGCTTTTGGGAAAGA 1070
Query 1210 CTCTCCACCTGATGATTTTAAGGAACTAGCATTTGAAGTTGCGAAGCTTGCCGGCCATCT 1269
|||||| ||||||||||| |||||||||||| |||||||||| |||||||| || ||||
Sbjct 1071 CTCTCCGCCTGATGATTTGAAGGAACTAGCAGTTGAAGTTGCAAAGCTTGCTGGTAATCT 1130
Query 1270 TCCTTTGGGTCTCAATGTCCTGGGTTCGTCATTAAGAAG-AAGGGGCAAAAAAGAGTGGA 1328
|||||||||||||| | || ||||||| || |||| ||| ||||| |||| | || ||||
Sbjct 1131 TCCTTTGGGTCTCAGTATCTTGGGTTCATCTTTAA-AAGGAAGGGACAAAGATGAATGGA 1189
Query 1329 TGGAGATGATGCCTAGGCTCCGAAATGGTTTGAACGGAGATATTATGAAAACATTAAGAG 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TGGAGATGATGCCTAGGCTCCGAAATGGTTTGAACGGAGATATTATGAAAACATTAAGAG 1249
Query 1389 TCAGCTACGATAGATTACATCAAA-AAGATCAAGATATGTTCCTTTGCATTGCGTGTTTA 1447
||||||||||||||||| || ||| |||||||||||||||||||| ||| |||||||||
Sbjct 1250 TCAGCTACGATAGATTAGAT-AAAGAAGATCAAGATATGTTCCTTCACATCGCGTGTTTA 1308
Query 1448 TTCAATGGTTTT-GAGGTCAGTTACGTCAAAGATTTACT-TGAAGATAATGTTGGGCTTA 1505
|||||||||||| ||| |||||| |||| | |||||| | | ||||||||||||||||||
Sbjct 1309 TTCAATGGTTTTAGAG-TCAGTTCCGTCGATGATTTA-TGTAAAGATAATGTTGGGCTTA 1366
Query 1506 CAATGTTG-TCTGAGAAGTCCCTCATACGTATTACACCGGATGGACATATAGAGATGCAC 1564
||| |||| | ||| ||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1367 CAACGTTGGT-TGATAAGTCCCTCATACGTATTACACCTGAAGGATATATAGAGATGCAC 1425
Query 1565 AATTTGCTAGAGAAATTGGGTAGAGAAATTGATCGTGCAAAGTCCAAGGGTAATCCTGGA 1624
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 1426 AATTTGCTAGAGAAGTTGGGTAGAGAAATTGATCGTGCAGAGTCCAATGGTAATCTTGGA 1485
Query 1625 AAACGTCAATTTCTGACGAATTTTGAGGATATTCATGAAGTAGTGACCGAGAAAACTGGG 1684
||||||| |||||||||||||||| |||||||| | |||||| | ||||||||||||||
Sbjct 1486 AAACGTCGATTTCTGACGAATTTTCAGGATATTGAAGAAGTACTTACCGAGAAAACTGGC 1545
Query 1685 ACAGAAACT-CT-TCTTGGAATACGTTTGCCATTCGAGGAATATTTTTCGACAAGGCCG- 1741
||| ||||| || || ||||||||| | | | | || | || || ||| | |
Sbjct 1546 ACAAAAACTGCTGTC--GGAATACGTCT-CTACAC-AG-ATTACGGG--GAAAAG-C-GA 1596
Query 1742 TTATTA--A-TAGAT-AAAGAATCGTTCAAAGGCATGCGTAATCTCCAATATCTAAAAAT 1797
|||||| | ||||| ||| |||||||| ||||||||| |||||||||||||||| | |
Sbjct 1597 TTATTATCAATAGATGAAA-AATCGTTCGAAGGCATGCATAATCTCCAATATCTATCAGT 1655
Query 1798 TGGTGATTGGTCAGATGGGGGTCAA-C--C-TCAGAGCCTCGTTTATTTGCCCCT-TAAA 1852
| | |||| ||| || | || | | || | | ||||||| ||||||| | ||||
Sbjct 1656 TTTTAATTGTTCA-ATTAATATAAAACTACCTCGGGGTCTCGTTTGTTTGCCC-TATAAA 1713
Query 1853 CTCAGATTGCTAGACTGGGATGATTGTCCATTGAAGTCTTTGCCATCTACTTTTAAGGCG 1912
|||||||||||| | ||||| ||| |||||||||||||||||| ||||| ||||||||
Sbjct 1714 CTCAGATTGCTACAATGGGAAAATTTTCCATTGAAGTCTTTGCCTTCTACATTTAAGGCT 1773
Query 1913 GAA-TATCTAGTT-AACCTCATAATGAAGTATAGTAAGCTTGAGAAACTGTGGGAAGGAA 1970
|| ||||| ||| ||| |||||||| | |||||||||||||||| |||||||||||||
Sbjct 1774 -AAGTATCTTGTTGAAC-TCATAATGGTGGATAGTAAGCTTGAGAAGCTGTGGGAAGGAA 1831
Query 1971 CTCTGCCCCTTGGAAGTCTCAAGAAGATGAATTTGTTGTG-TTCCAAAAATTTGAAAGAA 2029
||| ||| |||||||| ||||| ||||||||| ||| ||| ||||||| |||||||||||
Sbjct 1832 CTCAGCCACTTGGAAGACTCAAAAAGATGAATATGT-GTGGTTCCAAATATTTGAAAGAA 1890
Query 2030 ATTCCAGATCTTTCTAATGCCAGAAACCTCGAGGAATTAGATCTTGAAGGATGCGAATCT 2089
|||||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||
Sbjct 1891 ATTCCAGATCTTTCTAATGCCATAAACCTCGAGAAATTAGATCTTTATGGATGCTCATCT 1950
Query 2090 TTGGTGACACTTCCTTCCTCGATTCAGAATGCCATTAAACTGAGGAAGTTACATTGTTCG 2149
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1951 TTGGTGACACTTCCTTCCTCGATTCAGAATGCCATTAAACTGAGGAAGTTAGATTGTTCG 2010
Query 2150 GGGGTGATATTAATAGATTTAAAATCATTAGAAGGCATGTGTAATCTCGAATATCTATCA 2209
|| | | ||||||||||||||||| |||||||||||||| |||||||| ||||||| |||
Sbjct 2011 GGAGAGCTATTAATAGATTTAAAACCATTAGAAGGCATGCGTAATCTCCAATATCTGTCA 2070
Query 2210 GTTG-A--TTGCTC-ACGTGTGGAAGGCAC-TCAGGGCATCGTTTATTTCCCT-AGTAAA 2263
||| | ||| || | | |||| || ||||||||||||||||||||| | ||||
Sbjct 2071 GTTTTAAATTGGTCGAA-TATGGATCT-ACCTCAGGGCATCGTTTATTTCCCCCA-TAAA 2127
Query 2264 CTCAGAT-TGCTATTG-TGGAAT-AATTGTCCATTGAAGCGTTTGCATTCTAATTTTAAG 2320
|||| || | ||| | ||| || |||| |||||||||| |||||| |||||||||||||
Sbjct 2128 CTCATATCT-CTAA-GATGGTATGAATT-TCCATTGAAGTGTTTGCCTTCTAATTTTAAG 2184
Query 2321 GTTGAGTATCTGGTTAAACTCAGAATGGAGAATAGTGACCTTGAGAAGCTGTGGGATGGA 2380
| ||||||||||||| |||||| ||||| ||||||| | ||||||||| ||||||| |||
Sbjct 2185 GCTGAGTATCTGGTTGAACTCATAATGGTGAATAGTAAGCTTGAGAAGTTGTGGGAAGGA 2244
Query 2381 ACTCAGCCACTTGGAAGACTCAAGCAG-ATGT-TTCTGCGTGGTTCCAAATATTTGAAAG 2438
| ||||||||||||||| |||||| || ||| || || || ||| |||||||||||||
Sbjct 2245 AATCAGCCACTTGGAAGCCTCAAG-AGGATGAATT-TGAGTAATTCAAAATATTTGAAAG 2302
Query 2439 AGATTCCAGATCTTTCTT-TAGCCATAAACCTCGAGGAAGTAGATA-TTTGTAAATGCGA 2496
| ||||||||||||||| | ||||||||||| |||||| |||| | ||| | ||||
Sbjct 2303 AAATTCCAGATCTTTCTAAT-GCCATAAACCTAGAGGAATTAGA-ACTTTCTGGATGCTC 2360
Query 2497 ATCCTTGGTGACATTTCCTTCCTCGATGCAGAATGCCATTAAACTTA-TCTATTTAGATA 2555
||| |||||| || ||||||||||||| ||||||||||||||||| | | ||||||||||
Sbjct 2361 ATCTTTGGTGGCACTTCCTTCCTCGATTCAGAATGCCATTAAACTGAAT-TATTTAGATA 2419
Query 2556 TTAGTGATTGCAAAAAGCTAGAGAGTTTTCCAAC-CGATCTCAACTTGGAATCTCTCGAG 2614
| |||| ||||| ||||||||||||||||||||| | ||||||||||| ||||||| |||
Sbjct 2420 TGAGTGGTTGCAGAAAGCTAGAGAGTTTTCCAACTC-ATCTCAACTTGAAATCTCTGGAG 2478
Query 2615 TACCTCAATCTCACTGGATGCCCGAATTTGAGAAATTTCCCAGCAATCAAAATGGGATGT 2674
|||||| |||||||||||||| |||||||||||||||||| |||||| |||||||| |
Sbjct 2479 TACCTCGATCTCACTGGATGCTTGAATTTGAGAAATTTCCCTGCAATCCAAATGGGAAAT 2538
Query 2675 TCAGACGTTGACTTTCCGGAAGGGAGAA-AT--GAGATCGTGGTAGAAGATTGTTTCTGG 2731
| | ||| | ||||||| || || | || ||||||| ||||||||||||||||||
Sbjct 2539 TTATACG--G-CTTTCCGCTAGATAGTATATTTGAGATCGAAGTAGAAGATTGTTTCTGG 2595
Query 2732 AACAAGAATCTCCCTGCTGGACT-AGATTATCTCGACTGCCTTATGAGATGTATGCCTTG 2790
|||||||||||||||| | ||| | |||||||||||||||||||| |||||||||||||
Sbjct 2596 AACAAGAATCTCCCTG--G-ACTCA-ATTATCTCGACTGCCTTATGGGATGTATGCCTTG 2651
Query 2791 TGAATTTCGCCCAGAATATCTCGTTTTTCTCAATGTGAG-GTGCTACAAGCATGAGAAGC 2849
| ||||| ||||||||||| | ||| ||| ||||||| | || |||||| ||||||||
Sbjct 2652 TAAATTTAGCCCAGAATATTTGGTTAGTCTTGATGTGAGAG-GCAACAAGCTTGAGAAGC 2710
Query 2850 TATGGGAAGGCATCCAGTCGCTTGGAAGTCTCGAAGAG-ATGGATCTGTCAGAATCTGAA 2908
||||||||||| |||||||||| | ||||||||| | | ||| |||||||||||| ||||
Sbjct 2711 TATGGGAAGGCGTCCAGTCGCTCGCAAGTCTCGA-GTGGATGAATCTGTCAGAATGTGAA 2769
Query 2909 AACCTGACAGAAATTCCAGATCTTTCAAAGGCCACCAATCTGAAGCATTTATATCTCAAC 2968
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 2770 AACCTGACAGAAATTCCAGATCTTTCAAAGGCCACCAATCTGAAGCGTTTTTATCTCAGC 2829
Query 2969 AACTGCAAAAGTTTGGTGACACTTCCTTCTACTATTGGGAATCTCCAAAAATTGGTGAGG 3028
||||||||||||||||||||||||||||| |||| |||||||||||| ||| | |||
Sbjct 2830 GGGTGCAAAAGTTTGGTGACACTTCCTTCTACAATTGAGAATCTCCAAAATTTGTT-AGG 2888
Query 3029 -TTGGAAATGAAAGAATGCACAGGGCTGGAGGTTCTTCCAACCGATGTCAACTTGTCATC 3087
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2889 GTTGGAAATGAAAGAATGCACAGGGCTGGAGGTTCTTCCAACCGATGTCAACTTGTCATC 2948
Query 3088 TCTCGAAACCCTCGATCTCAGTGGTTGCTCAAGTTTGAGAACTTTTCCTCTGATTTCAAA 3147
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2949 TCTCGATATCCTCGATCTCAGTGGTTGCTCAAGTTTGAGAAGTTTTCCTCTGATTTCATG 3008
Query 3148 GAGTATCAAATGGCTCTATCTGGAAAACACCGCCATTGAAGAAATTC 3194
|| |||||||||||||||||| || ||||||||||||| |||| |||
Sbjct 3009 GAATATCAAATGGCTCTATCTAGATAACACCGCCATTGTAGAAGTTC 3055
Score = 662 bits (358), Expect = 0.0
Identities = 485/544 (89%), Gaps = 17/544 (3%)
Strand=Plus/Plus
Query 3184 TGA-AGAAATTCTAGATCTTTCAAAGGCCACCAAGCTCG-A--GTCTTTGATACTCAACA 3239
||| |||||||| ||||||||||||||||||||| || | | || ||| || |||| |
Sbjct 2774 TGACAGAAATTCCAGATCTTTCAAAGGCCACCAATCT-GAAGCGT-TTTTAT-CTCAGCG 2830
Query 3240 ACTGCAAAAGTTTGGTGACACTTCCTTCTACAATTGGGAATCTTCAAAATTTGAGACGTT 3299
|||||||||||||||||||||||||||||||||| |||||| ||||||||| | | |
Sbjct 2831 GGTGCAAAAGTTTGGTGACACTTCCTTCTACAATTGAGAATCTCCAAAATTTGTTAGGGT 2890
Query 3300 TGTACATGAAAAG-ATGCACAGGGCTGGAGGTTCTTCCAACCGATGTCAACTTGTCATCT 3358
|| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2891 TGGAAATG-AAAGAATGCACAGGGCTGGAGGTTCTTCCAACCGATGTCAACTTGTCATCT 2949
Query 3359 CTGGGTATCCTCGATCTCAGTGGTTGCTCAAGTTTGAGAACTTTTCCTCTGATTTCAACT 3418
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2950 CTCGATATCCTCGATCTCAGTGGTTGCTCAAGTTTGAGAAGTTTTCCTCTGATTTCATGG 3009
Query 3419 AATATTGTATGGCTCTATCTGGAAAACACCGCCATTGGAGAAGTTCCCTGCTGCATTGAG 3478
||||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 3010 AATATCAAATGGCTCTATCTAGATAACACCGCCATTGTAGAAGTTCCCTGCTGCATTGAG 3069
Query 3479 GATTTCACGAGGCTC-CGTGTACTACTGATGTATTGTTGCCAGAGGTTGAAAAACATCTC 3537
||||| |||||||| | ||||||| ||||||||||||||||||| |||||||||||| |
Sbjct 3070 AATTTCTCGAGGCTCAC-TGTACTAATGATGTATTGTTGCCAGAGTTTGAAAAACATC-C 3127
Query 3538 -CCCAAACATTTTCAGACTGAGAAGTCTAATGTTCGCCGACTTTACAGACTGTAGAGGTG 3596
||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 3128 ACCCGAACATTTTCAGACTGACAAGTCTAATGCTCGTCGACTTTACAGACTGTAGAGGTG 3187
Query 3597 TCATCAAGGCGTTGAGTGATGCAACTGTGGTAGCGACAATGGAAGAT-AGCGTTTCTTGT 3655
|||||| ||||||||||||||| |||||||||||||||||||||||| | | |||| |||
Sbjct 3188 TCATCATGGCGTTGAGTGATGCCACTGTGGTAGCGACAATGGAAGATCA-CATTTCCTGT 3246
Query 3656 GTACCATTATC-TGAAAACATTGAATATACATGTGAACGTTTCTGGGGTGAGTTGTATGG 3714
||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 3247 GTACCATTA-CATGAAAACATTGAATATACATGTGAACGTTTCTGGGATGAGTTATATGA 3305
Query 3715 TGAT 3718
||||
Sbjct 3306 TGAT 3309
Score = 355 bits (192), Expect = 2e-96
Identities = 334/400 (84%), Gaps = 20/400 (5%)
Strand=Plus/Plus
Query 1743 TATTAATAGA-TAAAGAATCGTTCA-AAGGCATGCGTAATCTCCAATATCTAAAAATTGG 1800
|||||||||| | || || | || | ||||||||||||||||||||||||| | ||
Sbjct 2018 TATTAATAGATTTAA-AACCATT-AGAAGGCATGCGTAATCTCCAATATCTGTCAGTT-T 2074
Query 1801 T-GATTGGTCAG-ATGGGGGTCAACCTCAGAGCCTCGTTTATTTGCCCCTTAAACTCAGA 1858
| ||||||| | || || || ||||||| || |||||||||| |||| |||||||| |
Sbjct 2075 TAAATTGGTC-GAATATGGATCTACCTCAGGGCATCGTTTATTTCCCCCATAAACTCATA 2133
Query 1859 T-TGCT-AGACTGGGATG-ATTGTCCATTGAAGTCTTTGCCATCTACTTTTAAGGCGGAA 1915
| | || ||| ||| ||| ||| ||||||||||| |||||| |||| ||||||||| ||
Sbjct 2134 TCT-CTAAGA-TGGTATGAATT-TCCATTGAAGTGTTTGCCTTCTAATTTTAAGGCTGAG 2190
Query 1916 TATCTAGTT-AACCTCATAATGAAGTATAGTAAGCTTGAGAAACTGTGGGAAGGAACTCT 1974
||||| ||| || ||||||||| | |||||||||||||||| |||||||||||| ||
Sbjct 2191 TATCTGGTTGAA-CTCATAATGGTGAATAGTAAGCTTGAGAAGTTGTGGGAAGGAAATCA 2249
Query 1975 GCCCCTTGGAAGTCTCAAGAAGATGAATTTGTTGT-GTTCCAAAA-ATTTGAAAGAAATT 2032
||| |||||||| ||||||| |||||||||| || || ||||| ||||||||||||||
Sbjct 2250 GCCACTTGGAAGCCTCAAGAGGATGAATTTG-AGTAATT-CAAAATATTTGAAAGAAATT 2307
Query 2033 CCAGATCTTTCTAATGCCAGAAACCTCGAGGAATTAGATCTTGAAGGATGCGAATCTTTG 2092
||||||||||||||||||| |||||| ||||||||||| ||| |||||| |||||||
Sbjct 2308 CCAGATCTTTCTAATGCCATAAACCTAGAGGAATTAGAACTTTCTGGATGCTCATCTTTG 2367
Query 2093 GTGACACTTCCTTCCTCGATTCAGAATGCCATTAAACTGA 2132
||| ||||||||||||||||||||||||||||||||||||
Sbjct 2368 GTGGCACTTCCTTCCTCGATTCAGAATGCCATTAAACTGA 2407
Score = 331 bits (179), Expect = 3e-89
Identities = 238/265 (90%), Gaps = 9/265 (3%)
Strand=Plus/Plus
Query 4187 GAAACAGAGTACAACCAACAGACTACGAGAAGCAAGAAGCGGATGCGGATGACATCGGGA 4246
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 3472 GAAACAGAGTACAACCAACCGACTAGGAGAAGCAAGAAGCGGATGCGGATGACATCGGGA 3531
Query 4247 ACATCTGAAGAATATATCAACTTAGCCGGTGACCAAATTGTAGCAGACACAGGATTGGCC 4306
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 3532 ACATCTGAAGAATATATCAACTTAACCGGTGACCAAATTGTAGCGGACACAGGATTAGCC 3591
Query 4307 GCTCTAAATATGGAGCTTTCGTTAGGGGAGGGAGAAGCATCATCA-T--CA----A-C-A 4357
||| |||||||||| |||||||||||| ||||||||||||||||| | | | | |
Sbjct 3592 GCTTTAAATATGGATCTTTCGTTAGGGCAGGGAGAAGCATCATCAGTTTCTTCTTATCCA 3651
Query 4358 TCTCTAGAGGGGGAAGCTTTGTCTGTTGATTATATGATAACTAAAGAACAAGATGAAGAC 4417
||||| |||||||||||||||| ||||||||| ||||||||| ||||||||| |||| |
Sbjct 3652 TCTCTGGAGGGGGAAGCTTTGTGTGTTGATTACATGATAACTGAAGAACAAGCTGAACAA 3711
Query 4418 ATTCCTTTCTTGGATCCTGTTTCTG 4442
|||||| ||||| ||||||||||||
Sbjct 3712 ATTCCTATCTTGTATCCTGTTTCTG 3736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177424405326
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5