BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16970.1
Length=2776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493181 jgi|Araly1|493181|fgenesh2_kg.7__2614__AT4G16970.1 3718 0.0
Ahg946539 jgi|Araly1|946539|scaffold_702768.1 147 6e-34
> Ahg493181 jgi|Araly1|493181|fgenesh2_kg.7__2614__AT4G16970.1
Length=2722
Score = 3718 bits (2013), Expect = 0.0
Identities = 2434/2632 (92%), Gaps = 50/2632 (2%)
Strand=Plus/Plus
Query 1 AGATTCACAGCATTTGCAATGTCAGAAAACTCGGAACCGCGTCAACTCGAGAATTCTACA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGATTCACAGCATTTGCAATGTCAGAAAACTCTGAACCGCGTCAACTCGAGAATTCTACA 60
Query 61 GCCGGAAGAGAGCTCATTCCTCTTAGTCCCACCAATTCAGACGGCAACGACGAC-CTTA- 118
|||||||||||||||||| ||||| ||| |||| ||||||||||||||||| | ||||
Sbjct 61 GCCGGAAGAGAGCTCATTGCTCTTGGTCTCACCGTTTCAGACGGCAACGACG-CACTTAG 119
Query 119 --ACTATCATCTGCATGCTTTTGAGTTATCTCGTCTCCTACTTTCTTCTGGTCATCCAGA 176
| ||| ||| ||| ||||||||||||| ||||| |||||| ||| |||||||||||||
Sbjct 120 CCATTATTATCGGCAAGCTTTTGAGTTATGTCGTCCCCTACTATCTGCTGGTCATCCAGA 179
Query 177 ATCTGTTATAGATCTTTCTTCAAAGTGTACATACTTCCAAGGTTCTCCTAATCTCGTCAA 236
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCTGTTATAGATCTTTGTACGAAGTGTACATACTTCCAAGGTTCTCCTAATCTCGTCAA 239
Query 237 ATATCTTTGCTCGATCCCTAATTCTCCTATTTCCCTTGCCGAAGATGGCTTCACTGTGAC 296
|| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 240 ATTTCTTTGCTCGATCCCTAATTCTCCTATTTCTCTTGCTGGAGATGGCTTCACTGTGAC 299
Query 297 TCTCTCGCCTGAGTCTCCCTCCGCTCCGGCTAGTTTCGCCTGTAGTTT-GGATTTGCAGG 355
|| ||||| || || ||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 300 TCCCTCGCGTGGGTTTCCCTCCGCTCCGGCTAGTTTCGCCTGTAGTTTAGG-TTTGCCGG 358
Query 356 AAAATGTTGTGTTAGAACAGTTTATGGATCCGAGATCTCTCACGCTAAAGCATTCGAGAG 415
||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| |||||
Sbjct 359 AAAATGTTGTGTTAGAACAATTTATGGATCCGAGATCTCCCAAGCTTAAGCATTTGAGAG 418
Query 416 AGAATGCGGAACAAGAGGAGCTAGAGCTCATGCCATTGCCCAAAAGAAGTCGAAATGATG 475
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||
Sbjct 419 AGAATGCGGAACAAGAGGAGCTACCGCTCATGCCATTGTCCAAAAGAAGCCGAAATAATG 478
Query 476 GAAACGATGTGAATTACTCTGTAATAGATAGCAGACCTAACGACATCAGAACTGTTGCCT 535
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 GAAACGATGTGAATTACTCTGTAATAGATAGCAGACCTAACGACATCACAACTGTTGCCA 538
Query 536 GTGGAACTATGCTTGGGACTATTTTAGCTCTTGAATCCCAAGCTTCGGTTTTCAATTTAA 595
||||| ||||||||||||| ||| |||||||||||||||||||||| |||| || |||
Sbjct 539 GTGGATCTATGCTTGGGACAATTAGAGCTCTTGAATCCCAAGCTTCGCTTTTGAAGTTAG 598
Query 596 GTGCATCTAACCGAGGA-ATAG-AGGCTTTTGTTC-AAGATCATCAGCCTGGTCCGC--A 650
|||||| ||||||| || |||| | ||||||| || | ||| ||||||| |||||| |
Sbjct 599 GTGCATGTAACCGA-GATATAGTA-GCTTTTGATCGTA-ATCCTCAGCCTTGTCCGCAGA 655
Query 651 ---G-A----------C---A---T--CCAATGCTTCAGTGGATGTCAATCCTACACATC 688
| | | | | |||||||||||||||||||||||||||| ||
Sbjct 656 CTCGAATTTTTGGTTTCGATATTTTGGCCAATGCTTCAGTGGATGTCAATCCTACGCA-G 714
Query 689 GG-TTAGAGGAAAGCAAGAACGATTTGCCATCTCCTCAGGAGGATGGATATTACGAGCGA 747
|| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
Sbjct 715 GGCTTAGAGGAAAGCAAGAACGATTTGCCATTTCCTCAGAAGGATGGATATTGCGAGCAA 774
Query 748 CCTGAAATTGGAGAT-TTCCAAATTGCTGACAACCAAATATTAATCGAAGAAGGTGATGA 806
||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||
Sbjct 775 CCTGAAATTGGAGATATT-CAAATTGCTGACAAGAAAATATTATTCGAAGAAGGTGATGA 833
Query 807 TAAAAATAAGAAGGATCTCTTCCCTAAGGGAGAGATACAAACTGATTCTGTGCAGTCCGA 866
|||||| ||||| ||||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 834 TAAAAACAAGAAAGATCTCTTCCCTAAGGGGGAGATACAAACTCCCTATGTGCAGTCCAA 893
Query 867 TCCCGTTGCCTCATTGATGCCAACAGAAAATGAGTTAGAACCAGTGCAGATTGTGGATGA 926
|| | |||||||| || ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 894 TCTTGCTGCCTCATCGACGCCAACAGAAAGTGAGTTAGAACCAGTGCAGATTGTGGAGGA 953
Query 927 CACTGAAGATCTACTTGTAGATGATCACACTGTAGACATCGT-TAGCACCCCTGACAGAG 985
||||||||| |||||||||| |||||||||| ||||||| | |||||| |||| |||||
Sbjct 954 TACTGAAGATTTACTTGTAGAAGATCACACTGAAGACATC-TGTAGCACACCTGTCAGAG 1012
Query 986 AGCTGCCGTTGAAGCCTTCTGCTACAGAAGCTAATCAAGATAAATCTTTGGTACAAAAAA 1045
||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1013 AGCAGCCGTTGAATCCTTCTGCTAAAGAAGCTAATCAAGATAAATCTTTGGTACAAAAAA 1072
Query 1046 CTCTGGATCAATGCAAAT-TGCCGGGAAACAGCAAAACGTACAGCTGTTCCCCTGAGATA 1104
||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |
Sbjct 1073 CTCAGGATCAATGCAAATCT-CCAGGAAACAGCAAAACGTACAGCTGTTCCCCTGAGAAA 1131
Query 1105 AAACACACCAGAAAAAGTAAAGTTATCCAGAAGAGGAAGCAGAATTTTAACACCGTTCGT 1164
||||| ||||||||||||||| || ||||||| |||||||||| ||||| |||||||
Sbjct 1132 AAACATACCAGAAAAAGTAAAACTACCCAGAAGTCGAAGCAGAATGTTAACTCCGTTCGA 1191
Query 1165 CTTAAAGATCAGAAGGATCAGGCAAAGCATAACACAATTCCAGATTTTGATTCTTACACT 1224
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CCTAAAGATCAGAAGGATCAGGCAAAGCATAACACAATTCCAGATTTTGATTCTTACACT 1251
Query 1225 ATTGTAGAGGAAGAAGGTTCAGGTGGCTACGGGATTGTTTATAAGGCAACGAGGAAAACT 1284
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1252 ATTGTAGAGGAAGAAGGTTCAGGTGGCTACGGAATTGTTTATAAGGCAAAGAGGAAAACT 1311
Query 1285 GATGGAACAGAGTTTGCAATTAAATGCCCTCATGTTGGCGCTCAGAAGTATTATGTGAAT 1344
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1312 GATGGAACAGAGTTTGCAATTAAATGCCCTCATGCTGGCGCTCAGAAGTACTATGTTAAT 1371
Query 1345 AATGAAATCAGAATGCTGGAGCGTTTTGGGGGGAAAAACTGTATAATAAAGCATGAAGGC 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AATGAAATCAGAATGCTGGAGCGTTTTGGGGGGAAAAACTGTATAATAAAGCATGAAGGC 1431
Query 1405 TGTCTCAAGAATGGAGATTCTGATTGCATCATCCTTGAGCACCTTGAACATGACAGACCT 1464
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TGTCTCAAGAATGGAGATTCGGATTGCATCATCCTTGAGCACCTTGAACATGACAGACCT 1491
Query 1465 GATTCATTGAAGAGAGAAATAGATGTGTATCAGCTGCAGTGGTACGGCTACTGCATGTTC 1524
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1492 GATTCATTGAAGAGAGAAATAGACGTGTATCAGCTACAGTGGTACGGCTACTGCATGTTC 1551
Query 1525 AAAGCTCTATCGAGTCTGCATAAGCAGGGTGTTGTTCATAGGGATGTTAAGCCAGGAAAC 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AAAGCTCTATCGAGTCTGCATAAGCAGGGTGTTGTTCATAGGGATGTTAAGCCAGGAAAC 1611
Query 1585 TTCCTCTTCTCTAGGAAGACCAACAAAGGCTATCTCATTGATTTTAACCTTGCCATGGAT 1644
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTCCTCTTCTCTAGGAAGACAAACAAAGGCTATCTCATTGATTTTAACCTTGCCATGGAT 1671
Query 1645 TTGCACCAGAAGTACAGAAGAGCAGATAAATCAAAAGCAGCTTCAGGTCTTCCTACCGCC 1704
||||||||||||||||| |||| ||||||||||||||||||| | |||||||| ||||||
Sbjct 1672 TTGCACCAGAAGTACAGGAGAGTAGATAAATCAAAAGCAGCTGCTGGTCTTCCAACCGCC 1731
Query 1705 AGCAAGAAACATCATACATTGGTTAAATCACTCGATGCGGTAAACCGAGGGACCAACAAA 1764
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1732 AGCAAGAAACATCATACACTGGTTAAATCACTCGATGCGACAAACCGAGGGACCAACAAA 1791
Query 1765 CCTTCTCAGAAAACTTTAGCGCCTAATAGTATCAAGAAAGCAGCGGGAAAGACAAGAGCT 1824
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1792 TCTTATCAGAAAACTTTAGCGCCTAATAGTCTCAAGAAAGCAGCGGGAAAGACAACAGCT 1851
Query 1825 CGGAATGACATGACCAGATGGGAGAGACTCAATAGCCAAGGGGCAGAAGGGTCTGGCTTA 1884
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 CGGAATGACATGAGCAGATGGGAGAGACTCAATAGCCAAGGGGCAGAAGGGTCTGGCTTA 1911
Query 1885 ACTTCAGCTAAAGATGTGACCAGCACAAGGAACAACCCTTCAGGTGAAAAGAGAAGAGAG 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1912 ACTTCAGCTAAAGATGTGACCAGCACAAGGAACAACCCTTCAGGTGAAAAGAGGAGAGAG 1971
Query 1945 CCTTTGCCATGTCATGGAAGAAAAGCGCTTTTAGATTTTCTGCAAGAGACAATGTCTGTT 2004
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1972 CCTTTGCCATGTCATGGAAGAAAAGCGCTTTTAGATTTTCTGCAGGAGACAATGTCTGTT 2031
Query 2005 CCAATTCCAAACCATGAAGTATCATCCAAAGCTCCTACGTCTATGAGAAAACGGGTAGCT 2064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CCAATTCCAAACCATGAAGTATCATCCAAAGCTCCTACGTCTATGAGAAAACGGGTAGCT 2091
Query 2065 GCTCTTCCAGGGAAAGCTGAGAAGGAACTTCTTTATCTGACCCCAATGCCACTGTGCTCT 2124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2092 GCTCTTCCTGGGAAAGCTGAGAAGGAACTTCTTTATCTGACCCCAATGCCACTGCACTCT 2151
Query 2125 AACGGTCGGCCTGAAGCAG--GGGA-CGTAATTGAGAAGAAAGACGGTCCTTGCTCAGGA 2181
||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||
Sbjct 2152 GTTAGTCGGCCTGAAGCAGTAGGGAACATAATTCAGAAGAAAGACGGTCCTTGCTCAGGA 2211
Query 2182 ACCAAAGGCTTCCGAGCTCCAGAGGTTTGCTTCAGATCTTTGCACCAAGGACCTAAGATA 2241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2212 ACCAAAGGCTTCCGAGCTCCAGAGGTTTGCTTCAGATCTTTGCACCAAGGGCCTAAGATA 2271
Query 2242 GACGTGTGGTCTGCGGGAGTTACTTTGTTATACCTCATAATGGGAAGGACACCTTTCACT 2301
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 GATGTTTGGTCTGCAGGAGTTACTTTGTTATACCTCATAATGGGAAGGACACCTTTCACT 2331
Query 2302 GGTGACCCTGAACAGAACATAAAGGACATTGCACAACTACGAGGCAGTGAAGAATTATGG 2361
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2332 GGTGACCCTGAACAGAACATAAAGGACATTGCGCAACTACGAGGCAGTGAAGAATTATGG 2391
Query 2362 GAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTTCCCTAAGGAATTATACGAGTCAAGG 2421
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2392 GAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTTCCCTGAGGAATTGTACGAGTCAAGG 2451
Query 2422 TACTTGAAGGGGATGGAGTTGAGAAAATGGTGCGAACTCAACACAAAACGCAGAGAGTTT 2481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2452 TACTTGAAGGGGATGGAGTTGAGAAAATGGTGCGAGCTCAACACAAAACGCAGAGAGTTT 2511
Query 2482 CTAGACGTAATTCCACTATCGCTTCTTGACCTCGTTGATAAATGTTTGACCGTTAACCCG 2541
||||||| |||||||| | ||| |||||||||||||||| |||||| |||||||| |||
Sbjct 2512 CTAGACGCAATTCCACGGTTGCTCCTTGACCTCGTTGATAGATGTTTAACCGTTAATCCG 2571
Query 2542 AGGCGACGAATCAGCGCAGAGGATGCTCTCAAG-CACGACTTCTTCCATCCA 2592
|||| |||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 2572 AGGCTACGAATCAGCGCAGAGGATGCTCT-AAGGCACGACTTCTTCCTTCCA 2622
Score = 106 bits (57), Expect = 1e-21
Identities = 64/67 (96%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 2631 GCAGCCTACAGTGGTTGCTGACGCAGTAAGCCAAACTCTAAACTA-T-TTACAATTGTAA 2688
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 2634 GCAGCCTACAGTGGTTGCTGACGCAGTAAGCCACACTCTAAACTAATATTACAATTGTAA 2693
Query 2689 AAGTAAA 2695
|||||||
Sbjct 2694 AAGTAAA 2700
> Ahg946539 jgi|Araly1|946539|scaffold_702768.1
Length=428
Score = 147 bits (79), Expect = 6e-34
Identities = 93/100 (93%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 2217 ATCTTTGCACCAAGGACCTAAGATAGACGTGTGGTCTGCGGGAGTTACTTTGTTATACCT 2276
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 266 ATCTTTGCATCAAGGGCCTAAGATAGACGTGTGGTCTGCGGGAGTTACTCTGTTATACCT 325
Query 2277 CATAATGGGAAGGACACCTTTCACTGGTGACCCTGAACAG 2316
||| ||||| | |||||||||||||| |||||||||||||
Sbjct 326 CATGATGGGGACGACACCTTTCACTGCTGACCCTGAACAG 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104748173750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5