BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G16980.1

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493180 jgi|Araly1|493180|fgenesh2_kg.7__2613__AT4G16980.1         809    0.0  


> Ahg493180 jgi|Araly1|493180|fgenesh2_kg.7__2613__AT4G16980.1
Length=671

 Score =  809 bits (438),  Expect = 0.0
 Identities = 501/530 (95%), Gaps = 10/530 (2%)
 Strand=Plus/Plus

Query  308  ATGACTCCACCACCCATGCCCATGACTCCACCACCTATGCCTATGGCTCCACCACCAATG  367
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  148  ATGACTCCACCACCCATGCCTATGGCTCCACCACCTATGCCTATGGCTCCACCACCAATG  207

Query  368  CCCATGGCTTCACCACCAATGATGCCAATGACTCCATCTACAAGCCCAAGCCCATTAACA  427
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  208  TCCATGGCTTCACCACCAATGATGCCAATGACTCCCTCTACAAGCCCAAGCCCATTAACA  267

Query  428  GTTCCGGATATGCCTTCGCCGCCGATGCCATCCGGAATGGAATCTTCACCTTCTCCAGGA  487
            |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct  268  GTTCCGGATATGCCTTCGCCGCCGATGCCATCCGGAATGGAACCTACACCTTCTCCGGGA  327

Query  488  CCCATGCCACCGGCAATGGCGGCTTCGCCGGATTCAGGAGCTTTCAATGTTAGAAACAAC  547
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  328  CCCATGCCACCGGCAATGGCGGCTTCGCCGGATTCGGGAGCTTTCAATGTTAGAAACAAC  387

Query  548  GTCGTAACACTTTCATGCGTTGTTGGAGTTGTTGCAGCCCATTTTCTCCTCGTTTGAAAT  607
            |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||  |
Sbjct  388  GTCGTAGCACTTTCATGCGTTGTTGGAGTTGTTGCAGCTCATTTTCTCTTCGTTTGAGTT  447

Query  608  GATTATTGAATTGGTCAGCCTCGATCGTTTTCTTGTAATTTACCTTCAtttttttCCCTC  667
            ||||||||||||||||||||||| |  ||| |||||||||||| ||||||||||||  ||
Sbjct  448  GATTATTGAATTGGTCAGCCTCG-T--TTT-CTTGTAATTTACTTTCATTTTTTTC--TC  501

Query  668  AAATTATTAGTG-GT-CATCATTTTATAATATTTGAGTTTGTGTTTGATGTACGATTCAG  725
            |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  502  AAATTATTAGTGTGTTCATCATTTTATTATATTTGAGTTTGTGTTTGATGTACGATTCAA  561

Query  726  ACATTTGTTTGCATTATGTGCTTAATAAGTTTATCGTTGACTCTACTTGAAGAGAGACTT  785
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  562  ACATTTGTTTGCATTATGTGCTTAATAAGTTTATCGTTGACTCTAGTTGAAGAGAGACTT  621

Query  786  TGTATGTGATGTAAATTTCTTCT--ATCTATGGAACATTGCATTCGTAGT  833
            |||||||||||||||||||||||  ||||||  |||||||||||||||||
Sbjct  622  TGTATGTGATGTAAATTTCTTCTTTATCTATTAAACATTGCATTCGTAGT  671


 Score =  187 bits (101),  Expect = 1e-46
 Identities = 107/110 (97%), Gaps = 0/110 (0%)
 Strand=Plus/Plus

Query  116  TCTTCTTTCTCTTCACAAGCCTTCTTCTTGCTCACATTGTCTATGGTTTTAATTCCTTTC  175
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  13   TCTTCTTCCTCTTCACAAGCCTTCTTCTTGCTCACATTGTCTATGGTTTTAATACCCTTC  72

Query  176  TCTTTAGCTCAAGCTCCCATGATGGCTCCTTCTGGCTCAATGTCCATGCC  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   TCTTTAGCTCAAGCTCCCATGATGGCTCCTTCTGGCTCAATGTCCATGCC  122


 Score = 75.0 bits (40),  Expect = 8e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  268  GATGTCTCCGATGCCAATGATGACTCCACCACCTATGCCTATG  310
            ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  129  GATGTCTCCGATGCCAATGATGACTCCACCACCCATGCCTATG  171



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30879562770


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5