BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G16990.2
Length=2640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493178 jgi|Araly1|493178|fgenesh2_kg.7__2611__AT4G16990.2 2037 0.0
> Ahg493178 jgi|Araly1|493178|fgenesh2_kg.7__2611__AT4G16990.2
Length=2219
Score = 2037 bits (1103), Expect = 0.0
Identities = 1362/1483 (92%), Gaps = 33/1483 (2%)
Strand=Plus/Plus
Query 41 GAGCTACGATGTTTTCCCCAACTTCAGAGGGGAAGATGTCCGCCACTCATTAGTCAGCCA 100
||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 44 GAGATACGATGTTTTCCCAAACTTCAGAGGGGAAGATGTCCGCCAATCATTAATCAGCCA 103
Query 101 CCTTCGTAAGGAACTTGATCGCAAATTCA-TCAATACATTCAACGACAACAGGATCGAAA 159
|||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||
Sbjct 104 TCTTCGTAAGGAACTTGATGGCAAATT-AGTCAATACATTCAACGACACCAGGATCGAAA 162
Query 160 GAAGCCGCAAAATAACCCCAGAGCTGTTATTGGCTATAGAAAACTCAAGGATCTCACTTG 219
||||||||||||||| ||||||||| |||||||| |||||| || |||||||||||||
Sbjct 163 GAAGCCGCAAAATAAACCCAGAGCTTTTATTGGCGATAGAAGGGTCTAGGATCTCACTTG 222
Query 220 TCGTCTTCTCTAAAAACTATGCTTCTTCCACGTGGTGCTTAGATGAATTGGTGAAGATCC 279
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 223 TCGTCTTCTCTAAGAACTATGCTTCTTCCACGTGGTGCTAAGATGAATTGGTGAAGATCC 282
Query 280 AAGAGTGCTATGAGAAATTGGATCAAATGGTGATTCCTATTTTCTACAAAGTAGATCCTT 339
|||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 283 AAGAGTGCCATGAGCAGTTGGATCAAATGGTGATTCCTATTTTCTACAACGTAGATCCTT 342
Query 340 CTCATGTTAGAAAACAGACCGGAGAGTTTGGCATGGTCTTTGGGGAGACCTGCAAGGGCA 399
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 343 CTCATGTTAGAAAACAGACCGGAGAGTTTGGTAAGGTCTTTGTAGAGACCTGCAAGGGCA 402
Query 400 GAACAGAGAATGAGAAGCGAAAATGGATGCGAGCTCTAGCAGAGGTAGCACATCTAGCCG 459
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 403 GAACAGAGAATGAGAAGCGAAAATGGATGCGAGCTCTAACAGAGGTAGCAAATCTAGCCG 462
Query 460 GAGAAGATCTTCGGAACTGGCGTAGCGAAGCAGAAATGCTTGAAAATATCGCCAAGGATG 519
| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 463 GTGAAGATCTTCGGAATTGGCGTAGCGAAGCAGAAATGCTTGAAAACATTGCCAAAGATG 522
Query 520 TTTCAAACAAACTC-TTCCCCCCATCAAATAATTTCAGTGACTTCGTCGGGATTGAAGCT 578
||| ||||||||| || |||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 523 TTTTAAACAAACTTATTACCCC-ATCAGATAATTTCAGTGACTTCGTCGGGATTGGAGCT 581
Query 579 CATATAGAGGCATTGATATCAATGTTGCGCTTCGACTCCA-AGAAAGCGCGAATGATAGG 637
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 582 CATATAGAGACATTGATATCAATGTTGCGCTTCGACTC-AGAGAAAGCGCGAATGATAGG 640
Query 638 GATTTGTGGGCCTTCTGAAACTGGTAAGACTACTATAGGAAGAGCTTTATACAGCAGACT 697
||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| | |
Sbjct 641 GATTTGTGGGCCTTCCGAAACTGGTAAGACTACCATAGGAAGAGCTCTATACAGCAAAAT 700
Query 698 CAAAAGCGACTTCCACCATCGGGCTTTCGTAGCATATAAGAGAAAAATACGGAGCGACTA 757
||||||| |||||||||||||||||||||||||||| ||||||| ||| | |||||| ||
Sbjct 701 CAAAAGCCACTTCCACCATCGGGCTTTCGTAGCATACAAGAGAACAATGCCGAGCGATTA 760
Query 758 TGACCAGAAGCTGTATTGGGAAGAACAATTTCTATCAGAAATTCTTTGTCAGAAGGATAT 817
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 761 TGACCAGAAGTTGTATTGGGAAGAACAATTTCTATCAGAAATTCTTTGTCAAAAGGATAT 820
Query 818 AAAGATAGAGGAATGTGGTGCGGTGGAACAACGACTAAAGCACACGAAAGTTCTTATTGT 877
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 821 AAAGATAGAGGAATGTGGTGTGGTGGAACAACGACTAAAGCACAAGAAAGTTCTTATTGT 880
Query 878 TCTTGATGATGTTGATGATATAGAGCTACTAAAAACGTTGGTAGGACGTATCAGATGGTT 937
|||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 881 TCTTGATGATGTCGATGATATTGAGCTACTACAAACGTTGGTAGGACGAATCAGATGGTT 940
Query 938 TGGATCTGAGAGCAAAATTGTTGTGATTACTCAAAAAAGGGAACTTCTCAAGGCTCACAA 997
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 941 TGGATCTGAGAGCAAAATTGTTGTGATTACTAAAAAAAGGGAACTTCTCAAAGCTCACAA 1000
Query 998 CATTGCACATGTTTATGAAGTGGGATTCCCATCAGAAGAACTGGCTCATCAAATGTTTTG 1057
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1001 GATTGCACATGTTTATGAAGTGGAATTCCCATCAGAAGAAATGGCTCATCAAATGTTTTG 1060
Query 1058 TCGATATGCTTTTGGGAAAAACTCTCCACCTCATGGTTTCAACGAGCTTGCAGATGAAGC 1117
|||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1061 TCGATATGCTTTTGGGAAAAACTCCCCACCTCATGGTTTCAGCGAGCTTGCATTTGAAGC 1120
Query 1118 TGCAAAGATTGCCGGTAATCGTCCTAAAGCTCTCAAGTACGTTGGTTCGTCTTTTAGAAG 1177
||||||| ||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 1121 TGCAAAGCTTGCCGGTAATCGTCCTAAAGCTCTGAAGCACTTTGGCTCGTCTTTTAGAAG 1180
Query 1178 -ACTA--G-ACAAGGAACAATGGGTGAAGATGCTATCGG-AGTTCCGTAGTAATGGGAAT 1232
| || | | |||||| | ||||||||||| ||||||| | | | | |||||| ||||
Sbjct 1181 GA-TATTGGATAAGGAAGAGTGGGTGAAGATTCTATCGGTACT-C--T-GTAATGAGAAT 1235
Query 1233 AAACTAAAAATCAGCTATGATGAGTTAGATGGTAAAGGTCAAGATTACGTTGCGTGTTTA 1292
|||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||
Sbjct 1236 AAACTAAAAATCAGCTATGATGGGTTAGATGGCAAAGGTCAAGGTTACATTGCGTGTTTA 1295
Query 1293 ACCAATGGTTCAAATTCCCAGGTGAAGGCAGAGTGGATCCACTTGGCACTAGGCGTGTCT 1352
||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACCAATG-T-----------G---AAGGCAGAGTGGATCCACTTGGCACTAGGCGTGTCT 1340
Query 1353 ATATTACTTAACATCCGCAGTGACGGAACGACAATTCTCAAACATTTGAGCTACAATCGA 1412
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1341 ATATTACTTAATATCCGCAGTGACGGAACGACATTTCTCAAACATTTGAGCTACAATCGA 1400
Query 1413 AGCATGGCGCAACAAGCAAAAATATGGTGGTATGAAAATT-TGGAAAGAGTGTGCAAGAA 1471
||| |||||||||||||||||||||||||||| || |||| || ||||||||| ||||||
Sbjct 1401 AGCGTGGCGCAACAAGCAAAAATATGGTGGTACGAGAATTGTG-AAAGAGTGTACAAGAA 1459
Query 1472 GTACAATATATGTGGCATAGATAGCTCAACTGATGGTGGTGGT 1514
||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1460 GTACAATATATGTGGCATAGATAGCTCAATTCATGGTGGTGGT 1502
Score = 1029 bits (557), Expect = 0.0
Identities = 749/837 (89%), Gaps = 31/837 (4%)
Strand=Plus/Plus
Query 1745 GCACCACGCCAAAACATGGTGG-CCGGAGAATTGTGAAAAAGTGTACGAGAACCACAACA 1803
||| || || |||| ||||||| | ||||||||||||| ||||||| || | | |||
Sbjct 1409 GCAACAAGCAAAAATATGGTGGTAC-GAGAATTGTGAAAGAGTGTACAAG-A--AGTACA 1464
Query 1804 ACATATATGGCATAGATAGATCAATTGACGGTGGTGATAAGTTTGAGGGAAAAAGTAAAG 1863
| |||| |||||||||||| |||||| | ||||| | | || ||| ||||
Sbjct 1465 ATATATGTGGCATAGATAGCTCAATT--C-ATGGTG----G--T---GG--TAAG-AAAG 1509
Query 1864 TTAGTGACGGTGGGTTAGACGGCAAAGATCAAGGTTCAATGTATGGACAAAGTTCAAATT 1923
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1510 TTTGTGACGGTGAGTTAGACGGCAAAGATCAAGGTTCAACGTATGGACAAAGTTCAAATT 1569
Query 1924 CCGAGCTTCAAATAAACATGGACGC-AGACAATAGGAGATGTGAACCTGTGAGTGAGATG 1982
| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
Sbjct 1570 CTGAGCTTCAAATAAACATGGACGCAAG-CAATAGGAGATATGAACCTGTGAGTGAGACG 1628
Query 1983 CTTTTCAAAAATTACAATGTGTGTTCGCCTAATGGTTTAACCGATGTAAACTGTTCAAAT 2042
||||||||||||||| ||| || || ||| ||||||||||| |||| |||||||||||||
Sbjct 1629 CTTTTCAAAAATTACGATGCGTATTTGCCGAATGGTTTAACGGATGGAAACTGTTCAAAT 1688
Query 2043 CCCCAGTCTCAAAGAAAATTGGACGCAAGCCTAAAGAAAGACAAAATTGTGCATGAGTGG 2102
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 ACCCAGCCTCAAAGAAAATTGGACGCAAGCCTAAAGAAAGACAAAATTGTGCATGAGTGG 1748
Query 2103 ATTCGAACCGGTAGTGGCTTCTTTTTTGATTTTCAGGGCCCAAAATCTATAGTGAGTGCT 2162
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1749 ATTCGAACCGGTAGTGGCTTCTCTTTTGATTTTCAGGGCCCAAATTCTATAGTGAGTGCT 1808
Query 2163 GCTCAAGTGGACGAGAAAAATTTCGAGTACTGTGAACAAGGTGTGTATATAACACTTGGC 2222
|||||| |||| |||||||| |||||| || || |||| ||||||||||||||||||
Sbjct 1809 GCTCAATTGGAGGAGAAAAAGATCGAGTG-TG-GAG-AAGGCGTGTATATAACACTTGGC 1865
Query 2223 ATCCTCAGTGGCGGAATTATAGTTCTCAAACATTTGGAGTTCAGCCGAAGAATGGCGCAA 2282
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1866 AGGCTCAGTGGCGGAATTATAGTTCTCAAACATTTGGAGTTCAGCCGAAGAGTGGCGCAA 1925
Query 2283 CAAGCAAAAGTTTGGTGGTCGGAAAATTGGATAAAAGTGTACCAGGAGCACAACATATGT 2342
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1926 CAAGCAAAAGTTTGGTGGTCGGAAAATTGGATAAAAGTGTACGAGGAGCACAACATCTGT 1985
Query 2343 GGCATAGATAAATCATTTGATGGTAGGTTTGATGATAGACGTGTCATTCGTCAATTAAGA 2402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1986 GGCATAGATAAATCATTTGATGGTAGGTTTGATGATAGACGTGTCATTTGTCAATTAAGA 2045
Query 2403 CCAAACTGAAGCACGGCCTGGCCCTTGTAAA-AGTCAGGACTTGAGCTAGATACTTAAGC 2461
|||||||||||| |||||||| |||| ||| ||||||||||||||||| ||||||||||
Sbjct 2046 CCAAACTGAAGCCCGGCCTGGTCCTTA-AAATAGTCAGGACTTGAGCTATATACTTAAGC 2104
Query 2462 C-AAGCAGATCTGTTTGGC-TAAGTCTGGTCGGGTTAGCGCGAAATTGTCGAAATCTGTT 2519
| || || | ||| || | ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2105 CTAAA-AGCT-TGTCTGCCCTAAGTCTGGTCAGGTTAGCCCGAAATTGTCGAAATCTGTT 2162
Query 2520 TAATAATTGCATTCAGTGCAAGTCTTTAATTTGTACTTCATGGCTTTAATACACTAA 2576
||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2163 TAATAATTGCATTTAGTGCAAGTCTTTTATTTGTACTTCATGGCTTTAATACATTAA 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99567900430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5