BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17000.1
Length=2169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493177 jgi|Araly1|493177|fgenesh2_kg.7__2610__AT4G17000.1 3160 0.0
> Ahg493177 jgi|Araly1|493177|fgenesh2_kg.7__2610__AT4G17000.1
Length=2195
Score = 3160 bits (1711), Expect = 0.0
Identities = 2048/2205 (93%), Gaps = 46/2205 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGCATTTGAGCATATGATAGTGGATGAGTTTAACGAAGAAGACTTCTACGAGACA 60
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCATTCGAGCATTTGATAGTGGACGAGTTTAACGAAGAAGACTTCTACGAGACG 60
Query 61 ATAGAAGCTCCCAAGTTTGTAGACCTCACCGCACCAGATCATCGCCCTGAAGGAGATGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGAAGCTCCCAAGTTTGTAGACCTCACCGCACCAGATCATCGCCCTGAAGGAGATGAT 120
Query 121 CGTTACTGGTTCTGTTCTAGAGTTGGATGTGATCAGAAGCATGAGGAATTTTTGGATTCG 180
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 121 CGTTACTGGTTCTGTTCCAGAGTTGGATGTGATCAGAAGCATGAAGAGTTCATGGATTCG 180
Query 181 GAAGCAATCTACAAAAAATTCGTTCTTCGGGTCATGGCAGCTAGGAGTCCAAGTGTTCGT 240
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAAGCTATTTACAAAAAATTCGTTCTTCGGGTCATGGCAGCTAGGAGTCCAAGTGTGCGT 240
Query 241 CTTCGAAAAGCTCTTTATAGAAAGGATTTCAGTGTTGATCCTAAATGTCCTAACACGGTT 300
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 241 CTTCGAAAAGCTCTTTATAGAAAGGATTTCAGTGTTGATCCTAAATGCCCCAATACCGTT 300
Query 301 CCTGCAAAGCCCTCAAGATCACGTGTGTCTAAATTGGCTATGATCTCATCGATTCCTCAG 360
|||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 301 CCTGCAAAGCCCTCGAGATCACGGGTGTCTAGATTGGCTATGATCTCATCAATTCCTCAG 360
Query 361 AAGGGTAATGGTAATATCAGGTCAAAAGAAGTAAAAGTAGTTTCCACAAATAAGAATGTG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGGTAATGGCAATATCAGGTCAAAAGAAGTAAAAGTAGTTTCCACAAATAAGAATGTG 420
Query 421 ACTCCAAAGGCAAAGGCAAAAGGAAAAGAGTCAGCAGTGATCTCATCAGTTCCTCAGAAG 480
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 421 ACTCCAAAGGAAAAGGCAAAAGGAAAAGAGTCATCAGTGATCTCATCAGTTCCTAAGAAG 480
Query 481 GCATTAACTGAGAGGAAGAAGCAAATGCAGAGCCCAGCAGCTTTTAGAAGTGTACAGAAT 540
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 481 GCATTAACTGAGAGGAAGAAGCAAATTCAGAGTCCAGCAGCTTTTAGGAGTGTACAGAAT 540
Query 541 CCGAGAAATGCAACAATCAAGGTGTCGGAAAACAGAGTTGTTGCAAAGGCTTTAGTGTTT 600
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 CCGAGAAATGCAACAGTCAAGGTGTCTGAAAACAGAGTTGTTGCAAAGGCTTTGGTGTTT 600
Query 601 CAATCTCCAAAGAAGTTGGTGAAACTGAAGAGATCTGTGGAGCTTAGTTCCTCGGTGAAG 660
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CAATCACCAAAGAAATTGGTGAAACTGAAGAGATCTGTGGAGCTTAGTTCTTCGGTGAAG 660
Query 661 AAGTTGTGTAATGGGATGAGGAAGCTTGAGATTGATAACAAAAGAAATGGTTTGGGGGTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 661 AAGTTGTGTAATGGGATGAGGAAGCTTGAGATTGATAACAAAAGAAATGGTTTAGGGATT 720
Query 721 AATCATAAGGTTGTGAGTTCAGCGT-CATCTAGAAGACCTCTAAAAACACGAGAGGTGAA 779
||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 721 AATCATAAGGTTGTGAGTTCAGC-TCCATCTAGAAGACCGCTAAAAACACGAGAGGTGAA 779
Query 780 GAGCCGAGTGTTTG---ATTCTCTGCGGTCACAGAAACAGATTGATCAAAAAGACAAAGG 836
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 780 GAGCCGAGTGTTTGATTATTCTGTGCGGTCACAGAAACAGATTGATGAAAAAGACAAAGG 839
Query 837 TGTCAGTACTTTGAAGAAGAGGGTTAAGAAAAAGGAAGATCCTGTGCCTTCCTCTGATCC 896
|||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||| |
Sbjct 840 TGTCAGTACTTTGAAGAAGAGGATCAAGAAAAAGGAAGAGCCTGTGCTTTCCTCTGATAC 899
Query 897 TT-TGAAACCTTATGATTCTAATGGTATGG-A----AG---------TTG----AG---G 934
|| | |||||| |||| |||||||||||| | || ||| || |
Sbjct 900 TTCT-AAACCTCATGAAGCTAATGGTATGGAACTTGAGAATCAATCTTTGCCAAAGACTG 958
Query 935 ATAAAACTAGTAGAGATGAAGAGCTCTTGGTTGAAAACAAATCTGAAGAATTGTCAGACA 994
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAAAACTAGTGGAGATGAAGAGCTCTTGGTTGAAAACAAATCTGAAGAATTGTCAGACC 1018
Query 995 CATCGAAGGCTAACATGAACAATCAGCTCCAGGCCAGAGAAGATCCTGCTGTAATAAAGG 1054
||||||||||||| ||| || |||| || |||||||||||||||| ||||||||||||||
Sbjct 1019 CATCGAAGGCTAATATGGACGATCAACTACAGGCCAGAGAAGATCTTGCTGTAATAAAGG 1078
Query 1055 AGAGTGGACTTGCTACATCACAGAAATATCAAATCACAGAGATTGAAGAAAAGGA-AAGT 1113
|||||||||| |||||| || || |||||||||| ||||||| ||||||||||| || |
Sbjct 1079 AGAGTGGACTGGCTACACCAAAGCAATATCAAATTGCAGAGATGGAAGAAAAGGAGAA-T 1137
Query 1114 GCATTAGCTTCGGAGTGCGAGGACAAAGAGAATGCTAATATTGTC-GCGGCTATCGATAA 1172
|||||||||| |||||||||||||||||||||||||| ||||| | |||||| |||||||
Sbjct 1138 GCATTAGCTTTGGAGTGCGAGGACAAAGAGAATGCTACTATTG-CAGCGGCTGTCGATAA 1196
Query 1173 AGAAGATATTGCTGTAATTAAGGTGAGTGGACTAGATAAAGCAAAGCAATGTGAGACTGT 1232
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 AGAAGATATTCCTCTAATTAAGGTGAGTGGACTGGATAAAGCAAAGCAATGTGAGACTGT 1256
Query 1233 GGAGATTGAAGACAAGGAAAATGCATTGCCATTGGAGTGTGAGAAGAAAGAAAATGCTAC 1292
||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1257 GGAGATTGAAGACAAGGAAAATGCATTACCATTGGAGTGT--G-AGAAAGAAAATGCTAC 1313
Query 1293 TAATGCAACGGATGTTGATAGGGAA---GATGATAAGGAAAATTCTTCAGCCTTGGACAA 1349
||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1314 TAATGCAACAGCTGTCGATAGAGAAGGCGATGATAAGGAAAATTCTTCAGCCTTGGACAA 1373
Query 1350 TAACAGAAATCTCGACCAAGCCACCTATCCTCTGTTGAAAAAGAAAGTCTTTGGCAAGAA 1409
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1374 TAACAGAAAAGTCGACCAAGCCACCTATCCTCTGTTGAAAAAGAAAGTTTTTGGCAAGAA 1433
Query 1410 AGAAATTTGTAAAACTACTCAAAAGGTTATGACAGTAGCAGACAAGTGTTTCAATGGCAA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGAAATTTGTAAAACTACTCAAAAGGTTATGACAGTAGCAGACAAGTGTTTCAATGGCAA 1493
Query 1470 GACTGTTTCGGCTGGTACCCGTGTCAAGTATACAAAACCCAAGCTCACGAATCCAAAGCC 1529
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 GACTGTTTCAGCTGATACCCGTGTCAAGTATACAAAACCTAAGCTCACGAATCCAAAGCC 1553
Query 1530 TTTTCGACTTAGAACCGATGAAAGACAAATTCTCAAGGAAGCAAATACAGAGAAGAAACC 1589
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1554 TTTTCGACTTAGAACCGATGAAAGAGGAATTCTTAAGGAAGCAAATACAGAGAAGAAACC 1613
Query 1590 ACAATGTACTCTTGCCAAAGAAGACACTGCCAGCATTAGGGGGTTCCATGGTGAAAACTT 1649
|||||||||| ||||||||||||| ||||| |||| | ||||||||||||||||||||
Sbjct 1614 ACAATGTACTATTGCCAAAGAAGAAACTGCAAGCACTCTTGGGTTCCATGGTGAAAACTT 1673
Query 1650 GGGTCCAAATCATCAACCAGTTCGAGTAAGTTCTTTCTGTAGCATATTGATGTC-TGTTC 1708
||||||||| ||||| | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1674 GGGTCCAAAACATCAGCAAGTTCGAGTAAGTTCTTTCTGTAGCATATTGAT-ACATGTTC 1732
Query 1709 ATCGTTTGGAGAAGAACTCAG-CTTCCCGGTTAAAAGCTTCAAGAGGAACATCCACAAAA 1767
||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 1733 ATCGTTTGGAGAAGAACGC-GACTTCCCGGTTAAAAGCTTCAAAAGGAACATCCACAAAA 1791
Query 1768 CTTGTCTCTGAAAATATGGTGGATTGCAAGAGGGTTGCATTAGGTAGAAAGAAGCAAGTG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CTTGTCTCTGAAAATATGGTGGATTGCAAGAGGGTTGCATTAGGTAGAAAGAAGCAAGTG 1851
Query 1828 GCAAATAAACGAATCGAAACCGCGGAGCAAGCCTCGCAGATGAATGGAGGATCTAAAGAA 1887
|||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1852 GCAAGGAAAAGAATCGAAACCGCGGAGCAAGCCTCACAGATGAATGGAGAATCTAAAGAA 1911
Query 1888 GTTCCAATCATCAACAAACCTTCTGTTTGTGTTGTTGCTTCGGGGGAGAAAAGACCTGTA 1947
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1912 GTTGCAATCATCAACAAACCTTCTGTTTGTGTTGTTGCTTCAGGGGAGAAAAGACCTGTA 1971
Query 1948 ACTGTCCCAAAGGGACCAAACTTCCATTGTATTCATGTCCCTAAGAGCTGTACAAAGAGA 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 ACTGTCCCAAAGGGACCAAACTTCCATTGTATTCATGTCCCTAAGAGCTGTACAAAGAGA 2031
Query 2008 GTGGCATCGG-AAGTCTAAGATCGGGTTTTTAAATATATCTGCAGTTTAATTCACACGAG 2066
||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2032 GTGGCAT-GACAAGTCTAAGATCGGCTTTTTAAATATATCTGCAGTTTGATTCACACGAG 2090
Query 2067 TCTTGTAAGTTTGGTTG-ATCTTTGAGAATTAACAGAAGTGAGATTATTTTGG-GTGTAT 2124
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2091 TCTTGTAAGTTTGGTTGGATCTTTGAGAATTAACAGAAGTGAGATTGTTTTGGTGTGTAT 2150
Query 2125 AAAACATTTGCTCAATTTCCAGATTAATCATTACAAAAATTGTTT 2169
|||||| ||||||| |||||||||| |||| |||||||||| |||
Sbjct 2151 AAAACACTTGCTCAGTTTCCAGATTGATCAATACAAAAATTCTTT 2195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81627395035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5