BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17010.1
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493176 jgi|Araly1|493176|fgenesh2_kg.7__2609__AT4G17010.1 1114 0.0
> Ahg493176 jgi|Araly1|493176|fgenesh2_kg.7__2609__AT4G17010.1
Length=784
Score = 1114 bits (603), Expect = 0.0
Identities = 724/782 (93%), Gaps = 10/782 (1%)
Strand=Plus/Plus
Query 1 GACGGTGTTATCTTACCGCCGGAGCCGGAGTTTCCCACTCTATTGTAATAACAGATATTT 60
||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||| |
Sbjct 1 GACGGTGTTATCTTACCGCCGGAGCCGGAGTTTCCCAGTATATTGTAGTAAC-GATATCT 59
Query 61 CGACCGGAGTTTCTAAGTGAATCCAAATTTGTTGTTCTTCGTTGCGGCTCCATCTCTCGC 120
|||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 60 CGACCGGAGTTTCTTAGTGAATCCAAA-TCGTTGTTCTTCGTTGCGGCTTCATCTCTCGC 118
Query 121 -TG-T-GTATTTATAGTCAGGTCTTTTGAGTTATCCCATTTTGCGCGATCCCG-TCTTCA 176
|| | || | | ||||||||||||||||||||| ||||||| ||| ||||| | ||||
Sbjct 119 TTGTTAGTCTGCAGAGTCAGGTCTTTTGAGTTATCTCATTTTGGGCGGTCCCGTTTTTCA 178
Query 177 CCGTTTCC-ATCTTCCAGCGAGCACATCTCTGTTGATCGATAATT-TTGTACCTAGTTCA 234
|||||||| || |||||||||| || ||||||| ||||| ||||| | ||||||||| |
Sbjct 179 CCGTTTCCGAT-TTCCAGCGAGTACGTCTCTGTCGATCGGTAATTAAT-TACCTAGTTGA 236
Query 235 GTTGTAGGAAAGATGAACAAGCTGTTGGAATATGGGAGAAAAGCTATGTTCTATGTGAGA 294
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 GTTGCAGGAAAGATGAACAAGCTGTTGGAGTATGGGAGAAAAGCTATGTTCTATGTGAGA 296
Query 295 GTTCTCTCCGGCTATGAAGAAAGGAGAATCCGGAGTTACAGGTTGCAACTCGAAAAGCGT 354
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 297 GTTCTCTCTGGCTATGAAGAAAGGAGAATCCGTAATTACAGGTTGCAACTCGAAAAGCGT 356
Query 355 ATCCAGCAGGCTAACCAAAGGAAAGTAGAGATAAACAGACTTCCAGAGCAGATTGTATTA 414
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 357 ATCCAACAGGCTAACCAAAGGAAAGCAGAGATAAACAGACTCCCAGAGCAGATTGTATTA 416
Query 415 TCTGAAGTCCGCCGTATGGTTGAGGAGATGCAGAATTTGAATAAGCAGATTGAGAATACG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 TCTGAAGTCCGCCGTATGGTTGAGGAGATGCAGAATTTGAATAAGCAGATTGAAAATACG 476
Query 475 GAGGCTCAAATTGAAGACTACTTCAAACCGATAGACAAGCATGCTAGTACCATAATGGAA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAGGCTCAAATTGAAGACTACTTCAAACCGATAGACAAGCATGCTAGTACCATAATGGAG 536
Query 535 ATTCAGCTCGAAGGAGAGAAGAAAACGATGGGGACAATGATGAACGCAACACAACAGGAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATTCAGCTCGAAGGAGAGAAGAAAACGATGGGGACAATGATGAACGCAACACAACAGGAA 596
Query 595 GCTATACGAAAGATTGAAGAAGCTGAGAAACTCGCTCGGGCACGTGGAAATGCAAATGTG 654
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 597 GCTATAAGAAAGATTGAAGAAGCTGAGAGACTCGCTCGAGCACGTGGAAATGCAAATGTG 656
Query 655 ACTACAGATGCAAACATGGGAGATAAGATCCAGGATTCAGAGTCCTCAGCCAACGAAAAA 714
|| |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 657 ACCGCAGAGGCAAACACGGGAGATAAGATCCAAGATTCAGAATCCTCAGCCAACGAAAAA 716
Query 715 TCTCAAGCAAAATGAAGTCAGATCTTGTCTTCATGTTGACACAGAATAGATTCAGCGTCT 774
|||||||||||||||| | || |||||||||||| |||||||||||||| ||| ||||
Sbjct 717 GCTCAAGCAAAATGAAGACGGAACTTGTCTTCATGGCGACACAGAATAGATACAGAGTCT 776
Query 775 CT 776
||
Sbjct 777 CT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39800325348
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5