BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17020.3
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493174 jgi|Araly1|493174|fgenesh2_kg.7__2607__AT4G17020.2 2610 0.0
> Ahg493174 jgi|Araly1|493174|fgenesh2_kg.7__2607__AT4G17020.2
Length=1811
Score = 2610 bits (1413), Expect = 0.0
Identities = 1584/1666 (95%), Gaps = 13/1666 (1%)
Strand=Plus/Plus
Query 48 CAGTTTTCTTTGATTCTGGGTAGTAAATAATCGGGATCAATTGTAGA-AGAGCTCATCGA 106
|||||||||| ||||||||||| | ||||||| | |||||| | ||||||| ||||
Sbjct 1 CAGTTTTCTTCGATTCTGGGTAAT-AATAATC--G----ATTGTA-ATAGAGCTCTTCGA 52
Query 107 GAAAAGAGAGAACCTAAACTTTAAATTCAATTCTGTATTGTTCTCAAACTCGAACCCGAA 166
|||||| |||||||||||| ||||||||||||||| |||||||||||||| || ||||
Sbjct 53 GAAAAGTGAGAACCTAAACCCTAAATTCAATTCTGTTTTGTTCTCAAACTC-AAATCGAA 111
Query 167 ACTTTAAATCCTTCCTTATTTGTTTTCTGGAGTTCTTGTTTAGAACTGTTTTGGATT-TG 225
||||| |||||||||||||| |||||||||||||||| ||||| | ||||||||||| |
Sbjct 112 ACTTT-AATCCTTCCTTATTCGTTTTCTGGAGTTCTTCTTTAGTAGTGTTTTGGATTCGG 170
Query 226 ttttttttGAGGAGATGCTTTAGTTAACTAGGTTTGCTTCGAGCTGATCGCTGTGTGGCA 285
||| | || | | ||||||||| |||||||||||||||| ||||| ||| ||||||
Sbjct 171 GGTTTGTGGA-GTTCTTCTTTAGTTATCTAGGTTTGCTTCGAGTTGATCTCTGAGTGGCA 229
Query 286 TAAACCCTAATTTCGTGGAAACTGTGCTCTTTTAGAACCGGTCCAGTGAGTAAGGGAATC 345
||| |||||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 230 TAATCCCTAATTTCGTAGACATTGTGCTCTTTTAGAACCAGTCCAGTGAGTAAGGGAATC 289
Query 346 CAATTGGTGAAGATGCCGCAAGTTAAGATCATTGCTAAAAATTTCATGGACATGGTGGCG 405
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 290 CAATTGGTGAAGATGCCGCAAGTTAAGATCATCGCCAAAAATTTCATGGACATGGTGGCG 349
Query 406 TCACTTCCAGCCATCAAGCTTGACAAACTCTACAACAATGTCTTTATCTGCGAAGCCATT 465
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 350 TCTCTTCCCGCCATCAAGCTTGACAAACTCTACAACAATGTGTTTATCTGCGAAGCCATT 409
Query 466 CTCAGGTCTTTGCCGCCTCTTGCCAAGAAGTATGTATTGCAGATGTTGTACATTGATGTT 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 410 CTCAGGTCTTTGCCGCCTCTTGCCAAGAAGTATGTATTGCAGATGTTGTACATTAATGTT 469
Query 526 CCTGTACCTGCTACGATGATGGAGGAGTGGGTGCTCGCAGATGGCACCTCTAAACATAGA 585
|||||||||||| ||||||||||||||||||| || |||||||| ||||||| ||||||
Sbjct 470 CCTGTACCTGCTGCGATGATGGAGGAGTGGGTTCTTGCAGATGGTGCCTCTAAGCATAGA 529
Query 586 GTTGCTATTGATCGACTGATTCAATTAAGGATTTTTTCAGAAATTAGTGATAGGAAAAGG 645
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 530 GTTGCTATTGATCGACTGATTCAATTAAGGATTTTTTCAGAAACTAGTGATAGGAAAAGG 589
Query 646 GGAACCAGCTACAGCCTAAATCCTACATTTCAGAACAATCTTCAGAAACATATTATTTCC 705
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 590 GGAATCAGTTACAGCCTAAATCCTACATTTCAGAACAATCTTCAGAAACATATAATTTCC 649
Query 706 GGTGGAGTTTTGCCTAGAGAGCCTATGAACTCCGACAATGCCATTAAACTTCCAAGCCTA 765
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 650 GGTGGAGTTTTGCCTAGAGAGCCTATGAATTCCGACAATGCCATTAAACTTCCAAGTCTA 709
Query 766 CAAGAACTCGAAACCTATGCACTTAAGCAATGGGAGTGTTTCTTGCTACAACTTATAAAT 825
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CAAGAACTCGAGACCTATGCACTTAAGCAATGGGAGTGTTTCTTGCTACAACTTATAAAT 769
Query 826 TCGGGTCAAGGTGAAAAACTAACTGGCATCAGTTCATCCATGATGAAAATTTTTCAGCGA 885
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 770 TCGGGTCAAGGTGAGAAGCTAACTGGCATCAGTTCATCCATGATGAAAATTTTCCAGCGA 829
Query 886 GGTTTATTGAGTCAGAGAGACAAAGATGGCCCGAGATTAACTGAGAGTGGCTTTCAGTTT 945
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 GGTTTATTGAGTCAGAGAGACAAAGATGGCCCAAGATTAACTGAGAGTGGCTTTCAGTTT 889
Query 946 TTGCTGATGGATACAAATGCCCAGCTTTGGTACATTATTCGAGAATACATATTGAATGCC 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 890 TTGCTGATGGATACAAATGCCCAGCTTTGGTACATTATTCGAGAATACATATCGAATGCT 949
Query 1006 GAGGAGCGAGATGTAGATCCAGCAGACTTGATTTCGTTTTTGTTGGAGCTTAGTTTTCAT 1065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GAGGAGCGAGATGTAGAACCAGCAGACTTGATTTCGTTTTTGTTGGAGCTTAGTTTTCAT 1009
Query 1066 GTTACTGGTCAGGCATATAACTTAAATACCTTGACAGAGGTTCAAAACAATACCCTCAAG 1125
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1010 GTTACTGGTGAGGCATATAACTCAAATACCTTGACAGAGGTTCAAAATAATACCCTCAAG 1069
Query 1126 GACCTTGCAGACTTGGGATTAGTCAAGCTTCAACAGGGAAGGAAAGACAGTTGGTTTATT 1185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1070 GACCTTGCAGACTTGGGATTAGTTAAGCTTCAACAGGGAAGGAAAGACAGTTGGTTTATT 1129
Query 1186 CCTACTAAACTGGCTACAAATTTATCAGTCAGTCTGGCAGATTCATCAGCGCGAAAAGAG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CCTACTAAACTGGCTACAAATTTATCAGTCAGTCTGGCAGATTCATCAGCGCGAAAAGAG 1189
Query 1246 GGATTTGTCGTGATGGAAACAAACTTCAGAATGTATGCGTACTCCACATCTAAGTTACAG 1305
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1190 GGATTTGTCGTGATGGAAACAAATTTCAGGATGTATGCATACTCCACATCTAAGTTACAG 1249
Query 1306 TGTGAAATTTTACGACTATTTGCGAGGATAGAGTACCAACTTCCAAACCTTATTGCTTGT 1365
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TGTGAAATTTTACGACTGTTTGCGAGGATAGAGTACCAACTTCCAAACCTTATTGCTTGT 1309
Query 1366 GCCATTACAAAGGAAAGTTTGTACAATGCATTTGACAATGGCATCACATCAGATCAGATT 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GCCATTACAAAGGAAAGTTTGTACAATGCATTTGACAATGGCATCACATCAGATCAGATT 1369
Query 1426 ATAACTTTCCTCCAGCAGAATTCTCATCCACGATGTGCTGATCGAGTCCCATCTATTCCA 1485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1370 ATAACTTTCCTCCAGCAGAATTCTCATCCACGATGTGCTGATCGGGTCCCATCTATTCCA 1429
Query 1486 GAAAATGTCACTGATCAGATTCGGCTTTGGGAGACAGATCTGCAGAGAATTGAGATGACC 1545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1430 GAAAATGTCACTGATCAGATTCGGCTTTGGGAGACAGATCTGAAGAGAATTGAGATGACC 1489
Query 1546 CAGGCTCACTTCTATGATGAATTTCCTTCAAAAGATGTGTTTGAGGCAGCTTGTGACTTT 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CAGGCTCACTTCTATGATGAATTTCCTTCAAAAGATGTGTTTGAGGCAGCTTGTGACTTT 1549
Query 1606 GCTCGGGAATGGAGAGGCCTTCTTTGGGAAGACTCTAAGAGAATGCGACTTGTTGTGAAA 1665
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GCTCGAGAATGGGGAGGCCTTCTTTGGGAAGACTCTAAGAGAATGCGACTTGTTGTGAAA 1609
Query 1666 TCCGAAGTTCACAATCAGATGCGTGAGTTTCTTCATACCCAAAGCA 1711
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TCCGAAGTTCACAATCAGATGCGTGAGTTTCTTCATACCCAAAGCA 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5