BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17030.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946531 jgi|Araly1|946531|scaffold_702760.1 1323 0.0
> Ahg946531 jgi|Araly1|946531|scaffold_702760.1
Length=796
Score = 1323 bits (716), Expect = 0.0
Identities = 769/795 (97%), Gaps = 2/795 (0%)
Strand=Plus/Plus
Query 91 TAGATAAGATAACAACAATATGAAGCATTCTCACGTTTTGCTTCTTCTATTTGTTCAAGT 150
|||||||| || |||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 4 TAGATAAG--AATAACAATATGAAGCAATCTCACGTTTTGCTTCTCCTACTTGTTCAAGT 61
Query 151 CATTGTCCTTTTGCCTCTCCTTTGTCTATCCGACGATTTTGTTAACTCTAGAGCTACTTA 210
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 62 CATTGTCCTTTTGCCTCTCCTTTGTCTATCCGACGACTTTGTTAACTCTAGAGCTACTTA 121
Query 211 TTATGGCAGCCCCGATTGCAAAGCAAATCCTCGGGGACATTGTGGGTATGGAGAATTTGG 270
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 TTATGGCAGCCCCGATTGCAAAGCAAATCCTCGAGGACATTGTGGGTATGGAGAATTTGG 181
Query 271 AAGAGATATCAATAACGGTGAAGTGAGTGGTGTTTCATGGCGACTATGGAACAATGGAAC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AAGAGATATCAATAACGGTGAAGTGAGTGGTGTTTCATGGCGACTATGGAACAATGGAAC 241
Query 331 TGGCTGTGGTGCTTGTTACCAGGTGAGGTGCAAGATACCACCACACTGCAGTGAGGAAGG 390
||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||
Sbjct 242 TGGCTGTGGTGCTTGTTACCAGGTGAGGTGCAAAATCCCTCCACACTGCAGTGAGGATGG 301
Query 391 AGTATACGTAGTGGCTACGGACTCCGGAGAAGGAGATGGCACGGACTTCATCTTAAGCCC 450
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 302 AGTGTACGTAGTGGCTACGGACTCCGGAGAAGGAGATGGTACGGACTTCATCTTAAGCCC 361
Query 451 TAAGGCGTACGGACGTATGGCGCGACCCGGCACAGAAAATCAGCTCTACTCCTTCGGTGT 510
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 362 TAAGGCGTACGGACGTATGGCACGACCCGGCACAGAAAATCAGCTCTACTCCTTCGGTGT 421
Query 511 AGTCAACGTTGAGTACCAAAGGATCCCTTGCCGATACGCAGGGTATAATCTGGTGTATAA 570
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 422 AGTCGACGTTGAGTACCAAAGGATCCCTTGCCGATACGCAGGTTACAATCTGGTGTATAA 481
Query 571 GATCCATGAGAAAAGCTACAATCCTCATTATCTTGCCATCCTTGTCTTGTACGTTGGTGG 630
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 482 GGTCCATGAGAAAAGCTATAATCCTCATTATCTTGCCATTCTTGTCTTGTACGTTGGTGG 541
Query 631 TGTTAATGACATCCTCGCCGTTGAAGTCTGGCAGGAGGATTGCAAAGAGTGGAGACGTAT 690
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTCAATGACATCCTCGCCGTTGAAGTCTGGCAGGAGGATTGCAAAGAGTGGAGACGTAT 601
Query 691 GAGAAGAGTGTTTGGAGCGGTTCATGATTTGCAGAATCCACCTAGAGGCACTCTCACATT 750
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 602 GAGAAGAGTGTTTGGAGCGGTTCATGATTTGCAGAATCCACCAAGAGGCACTCTCACATT 661
Query 751 GAGGTTCTTAGTCTACGGAAGCGCAGGAATCAATTGGATCCAATCGCCAAACGCTATTCC 810
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 662 GAGGTTCTTAGTCTACGGAAGCGCCGGAATCAATTGGATCCAATCGCCAAACGCTATTCC 721
Query 811 CGCTGATTGGACTGCCGGAGCCACCTACGACTCCAACATTCTACTTACTTAATTGATTCA 870
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 722 CGCTGATTGGACCGCCGGAGCCACCTACGACTCCAACATTCTACTTACTTAATTGTTTCA 781
Query 871 CTTTTCATCAGTGTG 885
|||||||||||||||
Sbjct 782 CTTTTCATCAGTGTG 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5