BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17040.1 Length=1247 Score E Sequences producing significant alignments: (Bits) Value Ahg493172 jgi|Araly1|493172|fgenesh2_kg.7__2605__AT4G17040.1 1736 0.0 > Ahg493172 jgi|Araly1|493172|fgenesh2_kg.7__2605__AT4G17040.1 Length=1103 Score = 1736 bits (940), Expect = 0.0 Identities = 1054/1108 (95%), Gaps = 12/1108 (1%) Strand=Plus/Plus Query 4 TCGTTATCGTTTCGGGGTCACAG-GGACT-TTC--ACTCT-T-TCTCTCTCTCTGCAACA 57 ||||||||||||| ||||| | | |||| ||| |||| | ||| ||||||||||||| Sbjct 1 TCGTTATCGTTTCAGGGTCTC-GACGACTCTTCTTTCTCTCTCTCTTTCTCTCTGCAACA 59 Query 58 AAGAAGAAATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTTCGAGCTCGTA 117 || || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 60 AACAAAAAATGGAGGTAGCAGCAGCGACTGCGACGAGTTTCACAACGCTCCGAGCTCGTA 119 Query 118 CGTCAGCGATTATCCCGTCTTCTACACGTAATCTGAGATCTAAACCGAGATTTTCTTCAT 177 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 120 CGTCAGCGATTATCCCGTCTTCTACACGTAACCTGAGATCTAAACCGAGATTTTCTTCAT 179 Query 178 CTTCATCTCTCAGAGCTTCTCTTTCGAATGGCTTTCTTTCGCCGTATACCGGAGGAAGCA 237 |||| || || |||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 180 CTTCTTCGCTTAGAGCTTCTCTTTCGAATGGCTTTCTCTCGCCGTATACCGCAGGAAGCA 239 Query 238 TCTCTAGTGACTTATGCGGCGCTAAGCTTCGTGCGGAATCGCTTAATCCGTTAAATTTTT 297 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 240 TCTCTAGTGACTTCTGCGGCGCTAAGCTTCGAACGGAATCGCTTAATCCGTTAAATTTGT 299 Query 298 CCAGTTCCAAGCCTAAACGCGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 357 | |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTAGTTCCAAACCTAAGCGTGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 359 Query 358 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAGAACCGAATTGTATATT 417 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 360 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAAAACCGAATTGTATATT 419 Query 418 TGGGAATGTCTCTCGTACCTTCAGTTACTGAGTTGATACTTGCGGAGTTTCTTTACCTTC 477 ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 420 TGGGAATGTCTCTTGTACCTTCTGTTACTGAGTTGATACTCGCGGAGTTTCTTTACCTTC 479 Query 478 AGTATGAAGACGAGGAAAAGCCTATTTACCTTTACATAAACTCGACTGGGACAACCAAGA 537 |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 480 AGTACGAAGACGAGGAAAAGCCTATTTACCTTTACATAAATTCGACAGGGACAACCAAGA 539 Query 538 ATGGTGAAAAGTTGGGCTATGATACTGAGGCTTTTGCAATCTATGATGTCATGGGGTATG 597 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 540 ATGGTGAAAAGTTGGGCTATGATACCGAGGCTTTTGCAATCTACGATGTCATGGGGTATG 599 Query 598 TCAAACCACCAATCTTTACTCTTTGCGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTC 657 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 TCAAACCACCAATCTTTACTCTTTGTGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTA 659 Query 658 TGACTGCTGGTGCAAAAGGAAATCGATCTGCGTTGCCCTCATCAACTATTATGATAAAGC 717 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 660 TGACTGCTGGTGCAAAAGGAAATCGTTCTGCGTTGCCCTCATCAACTATTATGATAAAGC 719 Query 718 AGCCCATTGCTCGATTTCAAGGCCAAGCAACTGATGTTGAAATTGCAAGGAAAGAAATCA 777 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 720 AGCCCATTGCTCGATTTCAAGGCCAAGCAACCGATGTTGAAATTGCAAGGAAAGAAATCA 779 Query 778 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCGGAGC 837 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 780 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCTGAGC 839 Query 838 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCACTGAGGCTGTTGAATATG 897 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 840 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCAGTGAGGCTGTTGAATACG 899 Query 898 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 959 Query 958 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAACTGTCTTCCGAAATCCCATGATTAA 1017 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 960 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAATTGTCTTCCGAAATCCCATGATTAA 1019 Query 1018 CAGGTTGGAGATCTT-ACCGCTGATCAAATGGGGAATCAGTGAACCATTCACCGGCACAG 1076 ||||||||| || || |||||||||||||||||||||| ||||||||||||||||| | Sbjct 1020 CAGGTTGGAAAT-TTGACCGCTGATCAAATGGGGAATCGGTGAACCATTCACCGGC---G 1075 Query 1077 AACTGAGGTAAAGTCTGGAAAACATGTT 1104 |||||||||||||||||||||||||||| Sbjct 1076 AACTGAGGTAAAGTCTGGAAAACATGTT 1103 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46586204574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5