BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17040.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493172 jgi|Araly1|493172|fgenesh2_kg.7__2605__AT4G17040.1 1736 0.0
> Ahg493172 jgi|Araly1|493172|fgenesh2_kg.7__2605__AT4G17040.1
Length=1103
Score = 1736 bits (940), Expect = 0.0
Identities = 1054/1108 (95%), Gaps = 12/1108 (1%)
Strand=Plus/Plus
Query 4 TCGTTATCGTTTCGGGGTCACAG-GGACT-TTC--ACTCT-T-TCTCTCTCTCTGCAACA 57
||||||||||||| ||||| | | |||| ||| |||| | ||| |||||||||||||
Sbjct 1 TCGTTATCGTTTCAGGGTCTC-GACGACTCTTCTTTCTCTCTCTCTTTCTCTCTGCAACA 59
Query 58 AAGAAGAAATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTTCGAGCTCGTA 117
|| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 60 AACAAAAAATGGAGGTAGCAGCAGCGACTGCGACGAGTTTCACAACGCTCCGAGCTCGTA 119
Query 118 CGTCAGCGATTATCCCGTCTTCTACACGTAATCTGAGATCTAAACCGAGATTTTCTTCAT 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 CGTCAGCGATTATCCCGTCTTCTACACGTAACCTGAGATCTAAACCGAGATTTTCTTCAT 179
Query 178 CTTCATCTCTCAGAGCTTCTCTTTCGAATGGCTTTCTTTCGCCGTATACCGGAGGAAGCA 237
|||| || || |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 180 CTTCTTCGCTTAGAGCTTCTCTTTCGAATGGCTTTCTCTCGCCGTATACCGCAGGAAGCA 239
Query 238 TCTCTAGTGACTTATGCGGCGCTAAGCTTCGTGCGGAATCGCTTAATCCGTTAAATTTTT 297
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 240 TCTCTAGTGACTTCTGCGGCGCTAAGCTTCGAACGGAATCGCTTAATCCGTTAAATTTGT 299
Query 298 CCAGTTCCAAGCCTAAACGCGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 357
| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAGTTCCAAACCTAAGCGTGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 359
Query 358 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAGAACCGAATTGTATATT 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAAAACCGAATTGTATATT 419
Query 418 TGGGAATGTCTCTCGTACCTTCAGTTACTGAGTTGATACTTGCGGAGTTTCTTTACCTTC 477
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 420 TGGGAATGTCTCTTGTACCTTCTGTTACTGAGTTGATACTCGCGGAGTTTCTTTACCTTC 479
Query 478 AGTATGAAGACGAGGAAAAGCCTATTTACCTTTACATAAACTCGACTGGGACAACCAAGA 537
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 480 AGTACGAAGACGAGGAAAAGCCTATTTACCTTTACATAAATTCGACAGGGACAACCAAGA 539
Query 538 ATGGTGAAAAGTTGGGCTATGATACTGAGGCTTTTGCAATCTATGATGTCATGGGGTATG 597
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 540 ATGGTGAAAAGTTGGGCTATGATACCGAGGCTTTTGCAATCTACGATGTCATGGGGTATG 599
Query 598 TCAAACCACCAATCTTTACTCTTTGCGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTC 657
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 TCAAACCACCAATCTTTACTCTTTGTGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTA 659
Query 658 TGACTGCTGGTGCAAAAGGAAATCGATCTGCGTTGCCCTCATCAACTATTATGATAAAGC 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TGACTGCTGGTGCAAAAGGAAATCGTTCTGCGTTGCCCTCATCAACTATTATGATAAAGC 719
Query 718 AGCCCATTGCTCGATTTCAAGGCCAAGCAACTGATGTTGAAATTGCAAGGAAAGAAATCA 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 AGCCCATTGCTCGATTTCAAGGCCAAGCAACCGATGTTGAAATTGCAAGGAAAGAAATCA 779
Query 778 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCGGAGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCTGAGC 839
Query 838 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCACTGAGGCTGTTGAATATG 897
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 840 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCAGTGAGGCTGTTGAATACG 899
Query 898 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 959
Query 958 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAACTGTCTTCCGAAATCCCATGATTAA 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAATTGTCTTCCGAAATCCCATGATTAA 1019
Query 1018 CAGGTTGGAGATCTT-ACCGCTGATCAAATGGGGAATCAGTGAACCATTCACCGGCACAG 1076
||||||||| || || |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1020 CAGGTTGGAAAT-TTGACCGCTGATCAAATGGGGAATCGGTGAACCATTCACCGGC---G 1075
Query 1077 AACTGAGGTAAAGTCTGGAAAACATGTT 1104
||||||||||||||||||||||||||||
Sbjct 1076 AACTGAGGTAAAGTCTGGAAAACATGTT 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5