BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17050.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493171 jgi|Araly1|493171|fgenesh2_kg.7__2604__AT4G17050.1 1622 0.0
> Ahg493171 jgi|Araly1|493171|fgenesh2_kg.7__2604__AT4G17050.1
Length=1061
Score = 1622 bits (878), Expect = 0.0
Identities = 955/993 (96%), Gaps = 1/993 (0%)
Strand=Plus/Plus
Query 37 TTC-TCAGATTTTTATAAACATGAATGAAACCTGAATTGTTCCACTAACTCTCAGCAAAA 95
||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 14 TTCTTCAGATTTTTATAAACATGAATGAAACCTGAATCGTTTCACTAATTCTCAGCAAAA 73
Query 96 ATGCGATCACTTTACTTAATCGTCTTCATCGTTATTAGTCTTGTTAAAGCTTCGAAAAGC 155
|||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 74 ATGCGATCACGTCACTTAATCGTTTTCATTGTTATCAGTCTTGTTAAAGCTTCGAAAAGC 133
Query 156 GATGATGGGTTTTGTTCAGCGCCTTCGATTGTTGAATCGGATGAGAAGACGAACCCCATT 215
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 134 GATGATGGGTTTTGTTCAGCGCCTTCGATTGCTGAATCGGATGAGAAGACGAAACCCATT 193
Query 216 TATTGGAAAGCCACGAATCCAACACTCTCTCCTTCACACCTCCAAGACTTGCCTGGTTTC 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TATTGGAAAGCCACGAATCCAACACTCTCTCCTTCACACCTCCAAGACTTGCCTGGTTTC 253
Query 276 ACACGAAGTGTATACAAACGAGATCATGCGTTAATAACACCGGAAAGTCATGTATACAGC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ACACGAAGTGTATACAAACGAGATCATGCGTTAATAACACCGGAAAGTCATGTATACAGC 313
Query 336 CCTTTACCTGACTGGACAAACACATTAGGGGCGTATTTGATCACACCGGCAACGGGTTCC 395
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 314 CCTTTACCTGACTGGAAAAACACATTAGGGGCATATTTGATCACACCGGCAACGGGATCC 373
Query 396 CATTTTGTCATGTACTTGGCGAAAATGAAAGAAATGTCAAGTTCAGGTTTGCCTCCACAA 455
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 374 CATTTTGTCATGTACTTGGCGAATATGAAAGAAATGTCAAGTTCAGGTTTGCCTCCACAA 433
Query 456 GACATAGAGCGTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGT 515
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GACATAGAGCGTCTTGTATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGT 493
Query 516 TCTTCaaaaaaaTTGACGGTTGATTCATATGCGTACCTACCTCCAAACTTTCACCATTCC 575
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 494 TCTTCAAAACAATTGACGGTTGATTCATATGCGTACCTACCTCCAAACTTTCATCATTCC 553
Query 576 TTGGACTGTGTTGAGTCTGCAACACTTGTTGTCTTCGAGCGGAGGTATGAATATCTAGGA 635
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 554 ATGGACTGTGTTGAGTCTGCAACACTTGTTGTCTTCGAGCGGAGGTATGAACATCTAGGA 613
Query 636 AGTCACACCACAGAGCTTATTGTTGGCTCCACAGACAAGCAACCACTACTCGAGACTCCT 695
||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 614 AGTCATACTACAGAGCTCATCGTTGGCTCCACAGACAAGCAACCACTACTTGAGACTCCT 673
Query 696 GGTGAGGTTTTTGAACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATC 755
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct 674 GGTGAGGTTTTTGAACTGCGGAAACTACTTCCGATGTCCCTTGCTTACGACTTTAACATC 733
Query 756 CATACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGAAGTTCATTATAACCAG 815
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 734 CATATTATGGATTTTCAGCCTGGAGAGTTTCTAAATGTTAAGGAAGTTCATTATAACCAA 793
Query 816 CATGGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGGTATCCA 875
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 794 CATGGTTTGTTGCTTCTGGAGGGCCAAGGCATTTATCGCTTGGGCGATAACTGGTATCCA 853
Query 876 GTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGGTATGCTGCACTC 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGGTATGCTGCACTC 913
Query 936 GGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCA 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCA 973
Query 996 AAGATTGATATGACTTTGCAGTAAAAGTCAGAA 1028
||| || ||||||||||||| |||||| |||||
Sbjct 974 AAGGTTTATATGACTTTGCACTAAAAGCCAGAA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5