BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17060.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493170 jgi|Araly1|493170|fgenesh2_kg.7__2603__AT4G17060.1 2859 0.0
> Ahg493170 jgi|Araly1|493170|fgenesh2_kg.7__2603__AT4G17060.1
Length=1712
Score = 2859 bits (1548), Expect = 0.0
Identities = 1664/1719 (97%), Gaps = 12/1719 (1%)
Strand=Plus/Plus
Query 1 GCGCGTATTCAGCGGCGGTGGAGAAGGTTGCGTCGGGTGCGCACACGTCACCCACCACTC 60
|||||||||| |||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1 GCGCGTATTCGGCGGCGGTGGAGAAGGTTTCGTCGGGTGCGCACACGTCA--C-CCACTC 57
Query 61 CGCGGCGCACTTTAGCACAATTCTCAACCGGCCACCTCCTTCTCGGCCCAATCCATCATT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 58 CGCGGCGCACTTTAGCACAACTCTCAACCGGCCACCTCCTTCTCGGCCCAATCCTTCTTT 117
Query 121 AACCTAAC-TTTTCTTTCTAACGTGCGCCTCTCCTCTCCTCCGCCTCTTTATTATCCCTT 179
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 AACCTAACTTTTTTTTTCTAACGTGCGCCTCTCCTCTCCTCCGCCTCTTTATTATCTCTT 177
Query 180 ACCCACCGCTCTTTCTACTTTCACTAATTTATTCTTCGCCGCCGCAATGACAATACCCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 178 ACCCACCGCTCTTTCTACTTTCACTAATTTATTCTTCGCCGCCGCAATGTCAATCCCCGA 237
Query 240 TGATGGATCTCCCGTCGCCATGGCCATCGATTCTTCCA-CGCCGTAACCGTCGCCACCAC 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 TGATGGATCTCCCGTCGCCATGGCCATCGATTCTTCCACCGCCGTAACCGTCGCCACCAC 297
Query 299 CACCACTCGAAGAGTTCCTCCTCCGTGCTGGACCGACGAGGAAACCGCTGCGCTTGTCAA 358
||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 CACTACTAGAAGAGTTCCTCCTCCGTGCTGGACCGACGAAGAAACCGCTGCGCTTGTCAA 357
Query 359 TGCCTACAAGGATAAATGGTTCGCCCTCCGCCGCGGGAACCTCCGTGCGGCTGATTGGGA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 TGCCTACAAGGATAAATGGTTCGCCCTCCGCCGTGGGAACCTCCGTGCGGCTGATTGGGA 417
Query 419 TGACGTCGCCGCGGCTGTTTCGTCCTCGTCCACCGTT-GGAGGTCCGCCGAAATCAGCAA 477
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 418 CGACGTCGCCGCGGCTGTTTCGTCCTCGTCCACC-TTGGGAGGTCCGCCGAAATCAGCAA 476
Query 478 TCCAATGTCGACACAAGATCGAGAAGCTTCGGAAACGTTATCGCGGCGAAAAACAACGAG 537
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 477 TCCAATGTCGACACAAGATCGAGAAGCTACGGAAACGTTATCGCGGCGAAAAACAACG-G 535
Query 538 -CTCTTAATCGACCAGGCAAGTTCTCTTCCTCTTGGGATTTGTTCCCTATCTTGGATGCT 596
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 TCTCTTAATCGACCAGGCAAGTTCTCTTCCTCTTGGGATTTGTTCCCAATCTTGGATGCT 595
Query 597 ATGGGATTCGCTCCGGTGACTCCGGCAGCCGTAGAAACTTACGATCCCGATGTGGATCAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATGGGATTCGCTCCGGTGACTCCGGCAGCCGTAGAAACTTACGATCCCGATGTGGATCAT 655
Query 657 GATGATGAGAGTAACGGTTTGGATGGATTTAGGGTTAGATCGAAGAGGTCTGGGAAGTTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GATGATGAGAGTAACGGTTTGGATGGATTTAGGGTTAGATCGAAGAGGTCTGGGAAGTTT 715
Query 717 AGCGGTGGTTACTCTGATTCACCTCGAGAAGTAGGAGATGGATATGGGGTTAGATCTAGG 776
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 716 AGCGGTGGTTACTCTGATTCACCTCGAGATGTAGGAGATGGATATGGGGTTAGATCTAGG 775
Query 777 GCAAGGAGTAACATGAAAATGTATGGTGGTTTCAAGTCTGAGTTTGATTCAGATCACGAT 836
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 GCAAGGAGTAACATGAAATTGTATGGTGGTTTCAAGTCTGAGTTTGAATCAGATCACGAT 835
Query 837 TCAGGAAGTGGATTTGGATTGAAAAGGAAATACAATGGGAATCCAAAGGTTAGTGCTGAT 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCAGGAAGTGGATTTGGATTGAAAAGGAAATACAATGGGAATCCAAAGGTTAGTGCTGAC 895
Query 897 TTCGATGCTGATTCTGATGATGAGATTGTGTTAGTCCCCAAGGCAACTAGGCTTAGGACT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 TTCGATGCTGATTCTGATGATGAGATTGTGTTAGTCCCCAAGGCAACTAGGCTTAGGGGT 955
Query 957 CATGGCAAGCCTTCCTCTGGTGATTTTAGCCATGGCAGTGGTGGTGGGTTTCCGTTGAAG 1016
|||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||
Sbjct 956 CATGGCAAGCCTTCCTCTGGCGAATTTAGCCATGGCGGTGGTGGTGGTTTTCCGTTGAAG 1015
Query 1017 TCGTTTGGTGATCGGAATTTTGCTTCTCATGGGTTTAAACCTAAGAATTTCAGTAAGCCT 1076
|||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1016 TCGTTTGGTGATCGAAATTTCGCTTCTCATGGATTTAAACCCAAGAATTTCAGTAAGCCT 1075
Query 1077 GAACCCAATTTCTCTCAGGATCTGGATTATGATGATGAGTTTGATGATGATAGAGCAGAG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAACCCAATTTCTCTCAGGATCTGGATTATGATGATGAGTTTGATGATGATAGAGCAGAG 1135
Query 1137 AGGGAAGGATTCAACCCGAGGATTCAAAGTTCTAGGAGCTCTTCGCGGGTGAATGGCTAC 1196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1136 AGGGAAGGATTCAACCCGAGGATTCAAAGTTCTAGAAGCTCTTCGCGGGTGAATGGCTAC 1195
Query 1197 AGCAGGAAGGATGGGAGCTATCCTCGAAACACTGGTGCTTCCAATGGCTATGGATCGTCT 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1196 AGCAGGAAGGATGGGAGCTATCCTCGAAACACTGGTGTTTCCAATGGCTATGGATCGTCT 1255
Query 1257 TCTAGGTTCAAGCATGAGCAAATGAATGCAGCAGCAGAAGTTGAGTCTGACCCGATCGAT 1316
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 TCTAGGTTCAAGCAGGAGCAAATGAATGCAGCAGCAGAAGTTGAGTCTGACCCGATTGAT 1315
Query 1317 GAAGTTGTTTCTTCTGTTAAGATGTTGACAGAAATGTTTGTGAGGGtggagaattcgaag 1376
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAAGTTGTCTCTTCTGTTAAGATGTTGACAGAAATGTTTGTGAGGGTGGAGAATTCGAAG 1375
Query 1377 atggagatgatgagagagatggagaagtcgagaatggagatggagCTGAAGCATTGCCAG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ATGGAGATGATGAGAGAGATGGAGAAGTCGAGAATGGAGATGGAGCTGAAGCATTGCCAG 1435
Query 1437 ATGATGCTTGAGTCACAGCAGCAGATCATAGGCGCGTTTGCTGAAGCGTTGAGCGAGAAA 1496
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1436 ATGATGCTTGAGTCGCAGCAGCAGATCATAGGCGCGTTTGCTGAAGCATTGAGCGAGAAA 1495
Query 1497 AAGAGCACAAATGCAAGGAGGCCGGTTTCGTAGTAGCAAAGTCGCTTATTAAAGAGGAAT 1556
|||||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 1496 AAGAGCACAAATGCAAGGAGGCCGGTTTAGTAGTAGCAAACTCTCTTATTCAAGAGGAAT 1555
Query 1557 GAAACGGTT-CATAATATGGATTTTCATATGGTATAATGATCAAATAGCTTTCGAGTGTA 1615
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GAA-CGGTTTCATAATATGGATTTTCATATGGTATAATGATCAAATAGCTTTCGAGTGTA 1614
Query 1616 GTACGAAGTGTCTTCTTCGAGTTACTAGGAAACAAAACGGCAGTGAAATTTGATGCGAGT 1675
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 GTACGAAGTGTCTTCTTCGAGTTACTAGGAACCAAAACGGCAGTGAAATTTGATGCGAGT 1674
Query 1676 AATGCAGGTTAAGTTTTTCAATTATTGGCATTTTGATAA 1714
||||||||||||| |||| ||||||||||||||||||||
Sbjct 1675 AATGCAGGTTAAGGTTTT-AATTATTGGCATTTTGATAA 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5