BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17080.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501 2484 0.0
Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1 976 0.0
> Ahg890515 jgi|Araly1|890515|Al_scaffold_0007_2501
Length=1539
Score = 2484 bits (1345), Expect = 0.0
Identities = 1481/1546 (96%), Gaps = 11/1546 (1%)
Strand=Plus/Plus
Query 120 ATGCATCTGAAGAATTCTACTGTAGCAGAACGGCGGTACATCGGAAAAGAAACCGCCGGT 179
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGCATCTGAAGAATTCAACTGTAGCAGAACGGCGGTACATCGGAAAAGAAACCGCCGCT 60
Query 180 TATTTAACTTCTTCCTCCGATTTGGATCCGAAACCTAAGATT-AA-A-CATCATCGTCCT 236
| |||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 61 TTTTTATCTTCTTCCTCCGATTTGGATCCGAAACCTAAGATTAAACATCATCATCGTCCT 120
Query 237 CTTCAGGTACCTGAGATTTTGACTCCAGACATTGGTGCTGGTGCTGGATTCAGTGTGTAT 296
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTCAGGTACCTGAGATTCTGACTCCAGACATTGGTGCTGGCGCTGGATTCAGTGTGTAT 180
Query 297 AATAATCAAGTTCAAGCTCAGAGTCGTCATCATCTGACGGTTGAAATCCCAGATTCATCG 356
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 181 AACAATCAAGTTCAAGCTCAGAGTCG---TCATCTAACGGTTGAAATCCCAGATTCATCG 237
Query 357 TCTCACAATCTTACATCTAAGAGACCTGTGGTGGTTCAATCTTCTAATCCGTTCAACGTT 416
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTCAGAATCTTACATCGAAGAGACCTGTGGTGGTTCAATCTTCTAATCCGTTCAACGTT 297
Query 417 GACGATTTCCGAAGACAACAACGCGCAAGCTTGGGTCCGATTTCATCTTATTGTCCGTCG 476
||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 298 GACGATTTCAGAAG---ACAACGCGCAAGCTTGGGTTCAATTTCATCTTATTGTCCGTCG 354
Query 477 TATCTTTTATCGTGGTTTTCTTCTTCTCTTCCATCGATCCCATCGGCCACTAATCAGAAG 536
|||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 355 TATCTTTTGTCGTTTTTTTCTTCATCTCTTCCATCGATCCCATCGGCGACTAATCAGAAG 414
Query 537 CTTCTCCGTCATGTTCTTAGAGTCCGTTTGATATGTttccatcttcgtttcttacttctt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTTCTCCGTCATGTTCTTAGAGTCCGTTTGATATGTTTCCATCTTCGTTTCTTACTTCTT 474
Query 597 ctctctgttcctcctctctacatcttcttcttgttgattagtttcagattcttccttctc 656
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 475 CTCTCTGTGCCTCCTCTCTATATCTTTTTCTTGTTGATTAGTTTCAGATTCTTCCTTCT- 533
Query 657 ttt-gtcttctcgattatcgctttttctttcgtcctttcgatctctctcAAATTCGCTCT 715
||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 534 TTTCGTCTTCTCGATAATCGCTTTTTCTTTTGTCCTTTCGATCTCTCTCAAGTTCGCTCT 593
Query 716 TCCTCACTTACCATCGATTCGTTTGATTATCGCTCGGTTACTTTCTCTCAAGCTTACCCC 775
||||||||||||||| |||||||||||||||||||| || || || |||||||||| |||
Sbjct 594 TCCTCACTTACCATCAATTCGTTTGATTATCGCTCGATTGCTGTCCCTCAAGCTTAGCCC 653
Query 776 TACCAGATCATCCTCTTCATCTCAGGAGAACACTAAACATGTTATTTGGTCAATTGGGTC 835
||||||||| || || || ||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 654 TACCAGATCCTCGTCGTCGTCTCAAGAGAGCACTAAACATGTTGTTTGGTCAATTGGGTC 713
Query 836 TAAGCCTGTGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCAGAAGTACAGCTCTGG 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GAAGCCTGTGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCAGAAGTACAGCTCTGG 773
Query 896 TGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAGTGGAGTTTATTACTA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAGTGGAGTTTATTACTA 833
Query 956 TTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAGTATGATGGATATGGAGT 1015
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 TTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAATATGATGGATATGGAGT 893
Query 1016 TGAAACTTGGGCTAAAGGGAGTAGGTACCGAGGTCAATACAGGCAAGGGATGAGACATGG 1075
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGAAACATGGGCTAAAGGAAGTAGGTACCGAGGTCAATACAGGCAAGGGATGAGACATGG 953
Query 1076 AACTGGTATCTACAGATTTTATACAGGGGATGTATATGCTGGTGAGTGGTCTAATGGACA 1135
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AACTGGTATCTATAGATTTTATACAGGGGATGTATATGCTGGTGAGTGGTCTAATGGACA 1013
Query 1136 GAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTTTTGTTGGAGAGTTTAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTTTTGTTGGAGAGTTTAA 1073
Query 1196 ATGGGGTGTCAAACATGGCCTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ATGGGGTGTCAAACATGGCCTTGGTCATTATCATTTCAGAAATGGTGATACATATGCTGG 1133
Query 1256 GGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAATTTGGAAACGGGCATCG 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAATTTGGAAACGGGCATCG 1193
Query 1316 GTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGGTATGTACACGTTCAGGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGGTATGTACACGTTCAGGAA 1253
Query 1376 TGGTGAGACACAGGCAGGCCATTGGGAAGACGGAGTTCTTAACTGTCCTACCGAGCAGAC 1435
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1254 TGGTGAGACACAGGCAGGCCATTGGGAAGATGGAGTTCTCAGCTGTCCTACCGAGCAGAC 1313
Query 1436 CACTCGCCCTGATTCATCGTTTTCCATCAGTCATTCCAAGGTTGTCGACACTGTCCAGCA 1495
|||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1314 CACTCGTCCTGATTCATCGTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGCA 1373
Query 1496 AGCAAGGAAAGCAGCCAAGAAAGCACGCGAAGTTGTGAAAGTTGAAGAGAGAGTGAACAG 1555
|||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1374 AGCAAGGAAAGCAGCCGAGAAAGCACGTGAAGTTGTCAAAGTTGAAGAGAGAGTGAACAG 1433
Query 1556 AGCAGTGATGGTCGCAAACCGAGCAGCAAATGCTGCTAGAGTTGCTGCTACAAAGGCTGT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGCAGTGATGGTCGCAAACCGAGCAGCAAATGCTGCTAGAGTTGCTGCTACAAAGGCTGT 1493
Query 1616 CCAAACCCAAACATTTCATTGTAGTAGTGGTGACGATCCCTTGTGA 1661
||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1494 CCAAACCCAAACATTTCATTGTAGTGGTGGTGATGATCCCTTGTGA 1539
> Ahg482483 jgi|Araly1|482483|fgenesh2_kg.4__1543__AT2G35170.1
Length=1798
Score = 976 bits (528), Expect = 0.0
Identities = 932/1122 (83%), Gaps = 48/1122 (4%)
Strand=Plus/Plus
Query 533 GAAGCTTCTCCGTC-ATGTTCTTAGAGTCCGTTTGATATGTttccatcttcgtttcttac 591
||||||||| || | || ||| ||| ||||||||| |||||||||||||||||||| |
Sbjct 480 GAAGCTTCTACG-CTATACCCTTCGAGCCCGTTTGATTTGTTTCCATCTTCGTTTCTTGC 538
Query 592 ttcttctct-ctgttcctcctctctacatcttctt-cttgttgattagt-ttcagat-tc 647
||||||| | |||| |||||| | ||||||||||| |||| |||| | | ||| | | ||
Sbjct 539 TTCTTCT-TGCTGTCCCTCCTTTATACATCTTCTTCCTTG-TGATCAATCTTC-G-TATC 594
Query 648 ttccttc-tctttgtcttct-cgattatcgctttttctttcgtcctttcgatctctctcA 705
|| |||| || | |||| | ||||||||||| | |||||| |||| |||||||||||||
Sbjct 595 TTTCTTCGTC-TAATCTT-TGCGATTATCGCTCTGTCTTTCATCCTCTCGATCTCTCTCA 652
Query 706 AATTCGCTCTTCCTCACTTACCATCGATTCGT-TTGATTATCGCTCGGTTACTTTCTCTC 764
|||||||||||||||||||||| || |||||| || || |||| || || || | ||
Sbjct 653 AATTCGCTCTTCCTCACTTACCGTCAATTCGTCTT-TTTGTCGCACGCTTGCTGAC-CT- 709
Query 765 AAGCTTACCCCTACCAGATCATCCTCTTCATCTCAG--GAGAAC-ACTAAACATGTTATT 821
||| |||| |||||| | |||||| |||||| ||| || ||||| || || |||
Sbjct 710 ----TTATCCCTGCCAGAT--T-CTCTTCCTCTCAGCCGAGCACTACTAACCAAGTGATT 762
Query 822 TGGTCAATTGGGTCTAAGCCTG-TGACTGAGAAGAAGACCAACTCTGGCTCATGGGTTCA 880
||||| |||||||| ||||| | || | ||||| |||||||| || || || ||||||||
Sbjct 763 TGGTCCATTGGGTCGAAGCCAGTTG-CGGAGAATAAGACCAATTCAGGATCTTGGGTTCA 821
Query 881 GAAGTACAGCTCTGGTGATGTATACGAGGGAGAGTTTCATAGGGGGAAGTGTTCAGGAAG 940
||||| || || |||||| || || |||||||||||||| || ||||||||||||||
Sbjct 822 GAAGTTTGGCACTAATGATGTGTATGAAGGAGAGTTTCATAGAGGAAAGTGTTCAGGAAG 881
Query 941 TGGAGTTTATTACTATTCTATGAAGGGTAAATACGAAGGGGATTGGATTGATGGGAAGTA 1000
|||||||||||||||||| ||||| || ||||||||||| || |||||||||||||| ||
Sbjct 882 TGGAGTTTATTACTATTCCATGAAAGGCAAATACGAAGGAGAGTGGATTGATGGGAAATA 941
Query 1001 TGATGGATATGGAGTTGAAACTTGGGCTAAAGGGAGTAGGTACCGAGGTCAATACAGGCA 1060
|||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 942 TGATGGTTATGGAGTAGAAACATGGGCTAAAGGAAGTAGGTATCGAGGTCAATATAGGTT 1001
Query 1061 AGGGATGAGACATGGAACTGGTA-TCTACAGATTTTATACAGGGGATGTATATGCTGGTG 1119
|||| | |||||||||| ||| | |||| | |||||||||||| ||||| ||||||||||
Sbjct 1002 AGGGCTAAGACATGGAATTGG-AGTCTATACATTTTATACAGGAGATGTGTATGCTGGTG 1060
Query 1120 AGTGGTCTAATGGACAGAGCCATGGCTGTGGTGTGTATACCTCTGAGGATGGTAGTCGTT 1179
||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||| | |
Sbjct 1061 AGTGGTCTAATGGCCAGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGAT 1120
Query 1180 TTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCA-TTATCATTTCAGAAAT 1238
| ||||||||| || |||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1121 ACGATGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGT-AGTTACCATTTCAGAAAT 1179
Query 1239 GGTGATACATATGCTGGGGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTGTATCAA 1298
|| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1180 GGCGATGCATATGCTGGGGAGTATTTTGCTGACAAGATGCATGGTTTTGGAGTGTATCAC 1239
Query 1299 TTTG-GAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGACTTGG 1357
|||| ||| ||| ||| |||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct 1240 TTTGCGAA-CGGCCATAAGTATGAAGGAGCTTGGCACGAGGGAAGAAGGCAAGGGCTCGG 1298
Query 1358 TATGTACACGTTCAGGAATGGTGAGACACAGGCAGGCCATTGGGAAGACGG-AGTTCTTA 1416
||||||||| ||||||||||||||||| || || || |||||||||||||| | | || |
Sbjct 1299 TATGTACACTTTCAGGAATGGTGAGACTCAAGCCGGACATTGGGAAGACGGTA-TACTCA 1357
Query 1417 ACTGTCCTACCGAGCAGACCACTC-G-CCCTGATTCATCGTTTT-CCATCAGTCATTCCA 1473
||| ||||||||||||| | || | ||| ||| |||| |||| ||||||| |||||||
Sbjct 1358 GTTGTGCTACCGAGCAGACTA-TCCGTCCCGGAT-CATC-TTTTACCATCAGCCATTCCA 1414
Query 1474 AGGTTGTCGACACTGTCCAGCAAGCAAGGAAAGCAGCCAAGAAAGCACGCGAAGTTGTGA 1533
| ||||| || |||| ||||||||||||||||||| ||||||| | ||||||||||
Sbjct 1415 AAGTTGTTGATGCTGTTGAGCAAGCAAGGAAAGCAGCTGAGAAAGCGCATGAAGTTGTGA 1474
Query 1534 AAGTTGAAGAGAG-AGTGAACAGAGCAGTGATGG-TCGCAAACCGAGCAGCAAATGCTGC 1591
|||| |||||||| | | || ||||| ||||||| | ||||| ||||||| ||||| ||
Sbjct 1475 AAGTGGAAGAGAGGA-TCAAGAGAGCGGTGATGGCT-GCAAATAGAGCAGCGAATGCGGC 1532
Query 1592 TAGAGTTGCTGCTACAAAGGCTGTCCAAACCCAAACATTTCA 1633
|||||| || ||| |||||||||||| ||||||| |||||
Sbjct 1533 TAGAGTAGCAGCTGTGAAGGCTGTCCAATCCCAAACCTTTCA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5